View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4193_high_7 (Length: 550)
Name: NF4193_high_7
Description: NF4193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4193_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 19 - 540
Target Start/End: Complemental strand, 35829742 - 35829218
Alignment:
| Q |
19 |
attgtagtgatatgataacatcatagggtggaatttgaactaatgaagttgtaatagaattgttgcagcctgagtcagctttgtaaagtataaaactaag |
118 |
Q |
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| T |
35829742 |
attgtagtgatatgataacatcatagggtgaaatttgaactaatgaagttgtaatagaattgttgcagcctgagtcagctttgtaaagtataaaactaag |
35829643 |
T |
|
| Q |
119 |
gattagaattataatggttttggtaaatgaaaatatgacatgttttgagaaactaacaagttttaaaaccatgannnnnnnn-cttcttataaaaattgc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
35829642 |
gattagaattataatggttttggtaaatgaaaatatgacatgttttgagaaactaacaagttttaaaaccatgatttttttttcttcttataaaaattgc |
35829543 |
T |
|
| Q |
218 |
ttaataagagagggggttgaatactgttctgctataaggaaatgtttgatgcaaatgaaaagttgagaagacaatttgaagaggtcaccaccttttatag |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35829542 |
ttaataagagagggggttgaatactgttctgctataaggaaatgtttgatgcaaatgaaaagttgagaagacaatttgaagaggtcaccaccttttatag |
35829443 |
T |
|
| Q |
318 |
gcaaacctgatagtctgatggaggtgtccttgaggtgtgtttgatgcaccttgttatggtaacaaatttttcatcatgtgtatattggtcatagaaacaa |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
35829442 |
gcaaacctgatagtctgatggaggtgtccttgaggtgtgtttgatgcaccttgtaatggtaacaaatttttcatcatgtgtatattggtcatagatacaa |
35829343 |
T |
|
| Q |
418 |
agtacaagtaaaataa--nnnnnnnnccccacaagttccattcgcgccggagtaatcatatccaaagtgtaccggaaattaaatgtgagtacctctttcg |
515 |
Q |
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|||||||||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |
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| T |
35829342 |
agtacaagtaaaataattattatttttcccataagttccattcgcgccggagtaatcatatccaaaatgtaccggaaattaaatgtcagtacctctttcg |
35829243 |
T |
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| Q |
516 |
attgtgtctttttcattctcctttg |
540 |
Q |
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||||||||||||||||||||||||| |
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| T |
35829242 |
attgtgtctttttcattctcctttg |
35829218 |
T |
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