View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4193_high_9 (Length: 509)
Name: NF4193_high_9
Description: NF4193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4193_high_9 |
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Alignment Details
Target: chr6 (Bit Score: 424; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 20 - 495
Target Start/End: Complemental strand, 1688074 - 1687599
Alignment:
| Q |
20 |
agatgcaattgacaaacaacctccaaacaaaaagagagatttttagtggaaccatttttaaccaaagaatgttattgttgtcctatgaattgtttacctc |
119 |
Q |
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| T |
1688074 |
agatgcaattaacaaacaacctccaaacaaaaagagagatttttagtggaaccacttttaatcaaagaatgttattgttgtcatatgaattgtttacctc |
1687975 |
T |
|
| Q |
120 |
cacctcaatcaagtaattataagcgctcctcactgaataacatttagaagaatggagcttccaaacccacgtatccgccacattgtcttgcaaaacaata |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| || ||||||||||||||||||||| |
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| T |
1687974 |
cacctcaatcaagtaattataagcgctcctcactgaataacatttagaagaatggaactttcaaacccacgtatctgctacattgtcttgcaaaacaata |
1687875 |
T |
|
| Q |
220 |
gatgtgaccagctcactacatttcctcaccagctcttcattcctttcatgaaaacaacctcctacgccactttcacgcctctccccgcaccccatcctaa |
319 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
1687874 |
gatgtgaccagctcactacatttcctcacctgctcttcattcctttcatgcaaacaacctcctacaccactttcacgcctctccccgcaccccatcctaa |
1687775 |
T |
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| Q |
320 |
cgaatgcatccactattgtggctaatttgttctcagctaactcatataaccaagcggtgttccctccaaccaaacatccttccaaaatagggtagaaaga |
419 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
1687774 |
cgaatgcatccactattgtggctaatttattctcagctaactcatataaccaagcggtgttccctccaaccaagcatccttccaaaatagggtagaaaga |
1687675 |
T |
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| Q |
420 |
taaaagtatatttaactcaaaattaatttatcatatattttaccatttaatcttacctattttagtcttgcctatg |
495 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1687674 |
taaaagtatatttaactcaaaattaatttatcatatattttaccatttaatcttacctattttagtcttgcctatg |
1687599 |
T |
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