View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4193_low_1 (Length: 958)

Name: NF4193_low_1
Description: NF4193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4193_low_1
NF4193_low_1
[»] chr4 (8 HSPs)
chr4 (279-942)||(49583343-49584006)
chr4 (29-278)||(49583037-49583286)
chr4 (628-792)||(49588989-49589153)
chr4 (146-271)||(5198998-5199124)
chr4 (154-238)||(4848615-4848699)
chr4 (201-278)||(15522606-15522683)
chr4 (100-169)||(29866154-29866223)
chr4 (332-365)||(49588574-49588607)
[»] chr5 (2 HSPs)
chr5 (92-213)||(37247603-37247723)
chr5 (122-165)||(27983524-27983567)
[»] chr2 (1 HSPs)
chr2 (92-169)||(5430280-5430357)
[»] chr8 (2 HSPs)
chr8 (147-238)||(7411339-7411429)
chr8 (142-210)||(3424305-3424372)
[»] chr6 (2 HSPs)
chr6 (140-215)||(6134221-6134296)
chr6 (144-204)||(2721839-2721899)
[»] chr1 (4 HSPs)
chr1 (99-219)||(26828549-26828669)
chr1 (88-160)||(34664919-34664991)
chr1 (191-259)||(35811949-35812017)
chr1 (229-278)||(16424901-16424950)


Alignment Details
Target: chr4 (Bit Score: 632; Significance: 0; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 632; E-Value: 0
Query Start/End: Original strand, 279 - 942
Target Start/End: Original strand, 49583343 - 49584006
Alignment:
Q  279 agagcaaactcaatttgccttaaaaccaactattgtatatatatgctccctttaaatatatttaaatttttggacaggtgaatgcagctgaaccagatga 378  Q
    |||||||||||||||| |||||||||||||||||||| |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49583343 agagcaaactcaattttccttaaaaccaactattgtaaatatatgctatctttaaatatatttaaatttttggacaggtgaatgcagctgaaccagatga 49583442  T
Q  379 acaatcacttccgtggtccattaaatatggtgtttttgatgatccggaaacatctgttgaggtgggtgaaatttaccaggctgaacttccaattttaatt 478  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49583443 acaatcacttccgtggtccattaaatatggtgtttttgatgatccggaaacatctgttgaggtgggtgaaatttaccaggctgaacttccaattttaatt 49583542  T
Q  479 tcaaagtctgagtatattttgttgcaaaataacaccgaggcagaaagtatacaccacaactttcaaatagcattacctatcccaataacttggataaaga 578  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  49583543 tcaaagtctgagtatattttgttgcaaaataacaccgaggcagaaagtatacaccacaactttcaaataggattacctatcccaataacttggataaaga 49583642  T
Q  579 gttatgatattcgggaagaaacaaagattgggatgcatgaggagcatgaacataaagggcagattcttgttcctggctctcgaagtgacaactggactga 678  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49583643 gttatgatattcgggaagaaacaaagattgggatgcatgaggagcatgaacataaagggcagattcttgttcctggctctcgaagtgacaactggactga 49583742  T
Q  679 aatcgaagaggccggtttagtccttggtttatatatatttgggaagaacttcgttgaagtgaaaaaatttatcggcaataagaagatgaaggacatattg 778  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49583743 aattgaagaggccggtttagtccttggtttatatatatttgggaagaacttcgttgaagtgaaaaaatttatcggcaataagaagatgaaggacatattg 49583842  T
Q  779 tcattctattatggaaaatttcgtaagtcttacaaatatcagagatggtgtggatgtagggaaggcaaaagcaagaaatgcaacttagggcataaaattt 878  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  49583843 tcattctattatggaaaatttcgtaagtcttacaaatatcagagatggtgtggatgtagggaagggaaaagcaagaaatgcaacttagggcataaaattt 49583942  T
Q  879 tcactgaatcaaggcaacgtgagcttttgtttcgtctgatgccgaatgtaccggaggaagttca 942  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  49583943 tcactgaatcaaggcaacgtgagcttttgtttcgtctgataccgaatgtaccggaggaagttca 49584006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 242; E-Value: 1e-133
Query Start/End: Original strand, 29 - 278
Target Start/End: Original strand, 49583037 - 49583286
Alignment:
Q  29 tatcatatccaagattttaaataaaggtctcagtcaagtttgtggttgcgttaagatgtcgcaatttcgattgttacagatgttgcattgcgcattgtgg 128  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49583037 tatcatatccaaggttttaaataaaggtctcagtcaagtttgtggttgcgttaagatgtcgcaatttcgattgttacagatgttgcattgcgcattgtgg 49583136  T
Q  129 ttgtcgcagcgtgaattaatcacaacattgcataattcttataaaaattaattatactatcttatattgtataatagcttaatttctcattatttcttct 228  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49583137 ttgtcgcagcgtgaattaatcacaacattgcataagtcttataaaaattaattatactatcttatattgtataatagcttaatttctcattatttcttct 49583236  T
Q  229 taatttcatagtgtaattattttcataatttagtaatgaatttatttctt 278  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49583237 taatttcatagtgtaattattttcataatttagtaatgaatttatttctt 49583286  T

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Target: chr4; HSP #3
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 628 - 792
Target Start/End: Original strand, 49588989 - 49589153
Alignment:
Q  628 acataaagggcagattcttgttcctggctctcgaagtgacaactggactgaaatcgaagaggccggtttagtccttggtttatatatatttgggaagaac 727  Q
    |||||||||| |||||||||||| ||| ||| ||| ||| | ||||||||||||||||||||||  |||||||||||| || |||| |||||||||||||    
T  49588989 acataaagggaagattcttgttcatggttcttgaactgatacctggactgaaatcgaagaggccaatttagtccttggcttttatacatttgggaagaac 49589088  T
Q  728 ttcgttgaagtgaaaaaatttatcggcaataagaagatgaaggacatattgtcattctattatgg 792  Q
    |||||| |||||||||  |||||  |||||||||| |||||||| | | ||||||||||||||||    
T  49589089 ttcgttcaagtgaaaaggtttatacgcaataagaaaatgaaggataaactgtcattctattatgg 49589153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 146 - 271
Target Start/End: Original strand, 5198998 - 5199124
Alignment:
Q  146 aatcacaacattgcataattcttataaaaattaattatactatcttatattgtataatagcttaatttctcattatttcttcttaatttca-tagtgtaa 244  Q
    ||||| ||||||||| || | |||| ||||||| ||||| |||| |||| ||||||||| |||||||||||||| ||||||| |||||||| || | |||    
T  5198998 aatcataacattgcacaaatattattaaaattatttatattatcatataatgtataataacttaatttctcattgtttcttcataatttcattactataa 5199097  T
Q  245 ttattttcataatttagtaatgaattt 271  Q
    || |||||||||||| |||||||||||    
T  5199098 ttcttttcataattttgtaatgaattt 5199124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 154 - 238
Target Start/End: Complemental strand, 4848699 - 4848615
Alignment:
Q  154 cattgcataattcttataaaaattaattatactatcttatattgtataatagcttaatttctcattatttcttcttaatttcata 238  Q
    ||||||| || | |||| ||||||| |||||||||| |||| ||||||||| |||||||||||||| ||||||| ||||||||||    
T  4848699 cattgcacaaatattattaaaattatttatactatcatataatgtataataacttaatttctcattgtttcttcataatttcata 4848615  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 201 - 278
Target Start/End: Original strand, 15522606 - 15522683
Alignment:
Q  201 aatagcttaatttctcattatttcttcttaatttcatagtgtaattattttcataatttagtaatgaatttatttctt 278  Q
    |||| |||||||||| ||| ||| ||| |||||| ||| ||||||||||||||| |||  ||||||||||| ||||||    
T  15522606 aataacttaatttcttattgtttattcataattttataatgtaattattttcattattatgtaatgaatttgtttctt 15522683  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 169
Target Start/End: Complemental strand, 29866223 - 29866154
Alignment:
Q  100 tgttacagatgttgcattgcgcattgtggttgtcgcagcgtgaattaatcacaacattgcataattctta 169  Q
    |||||| |||||||| || |  |||||||||||||  | |||||||||||||||||||||| || |||||    
T  29866223 tgttactgatgttgcgttacagattgtggttgtcgtggtgtgaattaatcacaacattgcacaaatctta 29866154  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 332 - 365
Target Start/End: Original strand, 49588574 - 49588607
Alignment:
Q  332 aaatatatttaaatttttggacaggtgaatgcag 365  Q
    |||||||||||||| |||||||||||||||||||    
T  49588574 aaatatatttaaatatttggacaggtgaatgcag 49588607  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 92 - 213
Target Start/End: Complemental strand, 37247723 - 37247603
Alignment:
Q  92 atttcgattgttacagatgttgcattgcgcattgtggttgtcgcagcgtgaattaatcacaacattgcataattcttataaaaattaattatactatctt 191  Q
    ||||||| |||||| |||||||| || |  |||||||||||||| | ||||||||||||||||| |||| || | ||||  |||| | |||| ||||| |    
T  37247723 atttcgagtgttacggatgttgcgttacagattgtggttgtcgcggtgtgaattaatcacaacaatgcacaaatattat-taaatcatttattctatcat 37247625  T
Q  192 atattgtataatagcttaattt 213  Q
    ||| ||||||||| ||||||||    
T  37247624 atagtgtataataacttaattt 37247603  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 165
Target Start/End: Original strand, 27983524 - 27983567
Alignment:
Q  122 attgtggttgtcgcagcgtgaattaatcacaacattgcataatt 165  Q
    |||||||| ||||||| |||||||||||||||||||||| ||||    
T  27983524 attgtggtcgtcgcagggtgaattaatcacaacattgcacaatt 27983567  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 92 - 169
Target Start/End: Complemental strand, 5430357 - 5430280
Alignment:
Q  92 atttcgattgttacagatgttgcattgcgcattgtggttgtcgcagcgtgaattaatcacaacattgcataattctta 169  Q
    |||||| ||||||| ||||||||||| |  |||||||||||||| | ||||||||||||||| |||||| || |||||    
T  5430357 atttcggttgttacggatgttgcattacagattgtggttgtcgcggtgtgaattaatcacaatattgcacaactctta 5430280  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 147 - 238
Target Start/End: Original strand, 7411339 - 7411429
Alignment:
Q  147 atcacaacattgcataattcttataaaaattaattatactatcttatattgtataatagcttaatttctcattatttcttcttaatttcata 238  Q
    ||||||||||| || || |||||| ||||||| ||||  ||||||||| ||||||||| |||||||||| ||| |||||||||  |||||||    
T  7411339 atcacaacatttcacaaatcttattaaaattatttatgatatcttataatgtataataacttaatttct-attgtttcttcttcttttcata 7411429  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 142 - 210
Target Start/End: Original strand, 3424305 - 3424372
Alignment:
Q  142 aattaatcacaacattgcataattcttataaaaattaattatactatcttatattgtataatagcttaa 210  Q
    |||||||||||||| |||| |||  |||||||||||| |||||||||| |||| ||||||||| |||||    
T  3424305 aattaatcacaacaatgcacaata-ttataaaaattatttatactatcatataatgtataataacttaa 3424372  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 140 - 215
Target Start/End: Original strand, 6134221 - 6134296
Alignment:
Q  140 tgaattaatcacaacattgcataattcttataaaaattaattatactatcttatattgtataatagcttaatttct 215  Q
    ||||||||||||||||||||| || |||||| ||||| | ||||||||||  ||| ||||||||| ||| ||||||    
T  6134221 tgaattaatcacaacattgcacaaatcttattaaaatcatttatactatcaaataatgtataataacttgatttct 6134296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 144 - 204
Target Start/End: Complemental strand, 2721899 - 2721839
Alignment:
Q  144 ttaatcacaacattgcataattcttataaaaattaattatactatcttatattgtataata 204  Q
    ||||||||||| |||||||| | |||| ||||||| |||||||||| |||| |||||||||    
T  2721899 ttaatcacaaccttgcataaatattattaaaattatttatactatcatataatgtataata 2721839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000006; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 99 - 219
Target Start/End: Complemental strand, 26828669 - 26828549
Alignment:
Q  99 ttgttacagatgttgcattgcgcattgtggttgtcgcagcgtgaattaatcacaacattgcataattcttataaaaattaattatactatcttatattgt 198  Q
    |||||| |||||||||||| |  |||||  ||||||| | || ||||||||||||||||||| || | |||| ||| ||| |||||||| | |||| |||    
T  26828669 ttgttatagatgttgcattacagattgttattgtcgcggtgtaaattaatcacaacattgcacaaattttattaaacttatttatactaacatataatgt 26828570  T
Q  199 ataatagcttaatttctcatt 219  Q
      || | ||||||||||||||    
T  26828569 gaaaaaacttaatttctcatt 26828549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 88 - 160
Target Start/End: Complemental strand, 34664991 - 34664919
Alignment:
Q  88 cgcaatttcgattgttacagatgttgcattgcgcattgtggttgtcgcagcgtgaattaatcacaacattgca 160  Q
    |||||||||| ||||||| |||||||||||  | |||||||||||| | |  ||||||||| |||||||||||    
T  34664991 cgcaatttcggttgttacggatgttgcattatggattgtggttgtcacggtatgaattaattacaacattgca 34664919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 191 - 259
Target Start/End: Complemental strand, 35812017 - 35811949
Alignment:
Q  191 tatattgtataatagcttaatttctcattatttcttcttaatttcatagtgtaattattttcataattt 259  Q
    |||| ||||||||| |||||||||||| | ||||||||||||| |||| ||||||| |||  |||||||    
T  35812017 tataatgtataataacttaatttctcactgtttcttcttaattccataatgtaattctttcaataattt 35811949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 229 - 278
Target Start/End: Original strand, 16424901 - 16424950
Alignment:
Q  229 taatttcatagtgtaattattttcataatttagtaatgaatttatttctt 278  Q
    |||||||||| || |||||||||| |||||| ||||||||||| ||||||    
T  16424901 taatttcataatgaaattattttcttaattttgtaatgaatttgtttctt 16424950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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