View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4193_low_11 (Length: 501)
Name: NF4193_low_11
Description: NF4193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4193_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 453; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 19 - 491
Target Start/End: Original strand, 33327601 - 33328073
Alignment:
| Q |
19 |
cctcctgtgtcgcacgcgctgtcacacgtgccggtgacatgtgccgcgacacgtgcggaggcacagtccagctcgacggttgtttggtgaagtatgacaa |
118 |
Q |
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| T |
33327601 |
cctcctgtgtcgcacgcgctgtcacacgtgccggtgacatgtgccgcgacacgtgcggaggcacagtccagctcgacggttgtttggtgaagtatgacaa |
33327700 |
T |
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| Q |
119 |
tgctacttttttgggtgtggaggataagaatgttttgttgaaaaggtgtgggccttccgtgggctataatccagaagccatgggatcgagagatgctgtg |
218 |
Q |
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| T |
33327701 |
tgctacttttttgggtgtggaggataagaatgttttgttgaaaaagtgtgggccttccgtgggctataatccagaagccatgggctcgagagatgctgtg |
33327800 |
T |
|
| Q |
219 |
cttggcgggcttgtgggcttaggtgggccttttagggttggtgggtcgggtatggtacgtggtgtttcccagtgtactggggatcttagttttggggagt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
33327801 |
cttggcgggcttgtgggcttaggtgggccttttagggttggtgggtcgggtatggtacgtggtgttgcccagtgtactggggatcttagttttggggagt |
33327900 |
T |
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| Q |
319 |
gtcaagattgtgttgttgaagcgatcggacggttgaaaagtgattgtggtactgcagattatggagatttgttcttgggaaaatgttatgcaagatattc |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33327901 |
gtcaagattgtgttgttgaagcgatcggacggttgaaaagtgattgtggtactgcagattatggagatttgttcttgggaaaatgttatgcaagatattc |
33328000 |
T |
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| Q |
419 |
gactggtggggcccatgatacttctaaggcccatggtaaggcccgttgtgggctcttcttcatgctacctttg |
491 |
Q |
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| T |
33328001 |
tactggtggggcccatgatacttctaaggcccatggtaaggcccgtcgtgggctcttcttcatgctacctttg |
33328073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 296 - 427
Target Start/End: Original strand, 29527779 - 29527910
Alignment:
| Q |
296 |
tggggatcttagttttggggagtgtcaagattgtgttgttgaagcgatcggacggttgaaaagtgattgtggtactgcagattatggagatttgttcttg |
395 |
Q |
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||||||| | ||||||| ||||||||||||||||||| || || ||| ||||||||| || ||||||| | ||| |||||||||||| |||||||| |
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| T |
29527779 |
tggggatttgagttttgtggagtgtcaagattgtgttacagaggcaatccgacggttgagaaatgattgtacttctggggattatggagatatgttcttg |
29527878 |
T |
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| Q |
396 |
ggaaaatgttatgcaagatattcgactggtgg |
427 |
Q |
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| T |
29527879 |
gggaagtgttatgcaaggtactctactggtgg |
29527910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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