View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4193_low_13 (Length: 449)
Name: NF4193_low_13
Description: NF4193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4193_low_13 |
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| [»] scaffold0066 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 16 - 439
Target Start/End: Complemental strand, 18526604 - 18526173
Alignment:
| Q |
16 |
cagttttttctcttaacaaagatagtgctccagatcgtgatggatttggagcaattttttaccaaaccttt-ggaatatcaacaagaattatgtttcaaa |
114 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |
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| T |
18526604 |
cagttttttctcttaacaaagatagtgctccagattgtgatggatttggagcaattttttaccaagccttttggaatatcaacaagaattatgtttcaaa |
18526505 |
T |
|
| Q |
115 |
agctgtcattgannnnnnnaaaactggttggattttacctagctttaattctaataatattgtgcttattcctaagactaaccatgcaacttaagtatta |
214 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |
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| T |
18526504 |
agctgtcattgatttttttaaaactggttggattttacctagctttaattctaataatattgtgcttattcctaagactaaccatgcaacttcagtatca |
18526405 |
T |
|
| Q |
215 |
gatcataggtccatttccattacaaattttaaattcaagcttatctttaagattttggcagatagactctctacatttatgccaactataatttctacac |
314 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
18526404 |
gatcataggtccatttccattgcaaattttaaattcaagcttatctttaagattttggccgatagactctctacatttatgccaactataatttctacac |
18526305 |
T |
|
| Q |
315 |
-------agggtttattaaaagtagaagtattaaagactgcatttgtttgacatctgaagttataaatgttcttaacaaaaagatttttgggggaaattt |
407 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18526304 |
aacaaagagggtttattaaaagtagaagtattaaagactgtatttgtttgacatctgaagttataaatgttcttaacaaaaagatttttgggggaaattt |
18526205 |
T |
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| Q |
408 |
agctttgaagatagacattgcaaaggcctttg |
439 |
Q |
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| T |
18526204 |
agctttgaagatagacattgcaaaggcctttg |
18526173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 141 - 202
Target Start/End: Original strand, 8884106 - 8884167
Alignment:
| Q |
141 |
gttggattttacctagctttaattctaataatattgtgcttattcctaagactaaccatgca |
202 |
Q |
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| T |
8884106 |
gttggattttaccaaactttaattctaataatattgtgctcattcctaagactaaccatgca |
8884167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 134 - 287
Target Start/End: Original strand, 19572264 - 19572417
Alignment:
| Q |
134 |
aaaactggttggattttacctagctttaattctaataatattgtgcttattcctaagactaaccatgcaacttaagt-attagatcataggtccatttcc |
232 |
Q |
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| T |
19572264 |
aaaaatggttggattttaccaaattttaactcaaacaatattgtgcttattcataaaactaaccatgtagataaagtcacta-attacaggtccattgcc |
19572362 |
T |
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| Q |
233 |
attacaaattttaaattcaagcttatctttaagattttggcagatagactctcta |
287 |
Q |
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| T |
19572363 |
attgcaaacttcaagttcaagcttatctttaaaattatggaacatagactttcta |
19572417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 16 - 202
Target Start/End: Original strand, 11982567 - 11982752
Alignment:
| Q |
16 |
cagttttttctcttaacaaagatagtgctccagatcgtgatggatttggagcaattttttaccaaac-ctttggaatatcaacaagaattatgtttcaaa |
114 |
Q |
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|||| ||||||||||||||||| ||||| |||| || |||||||||||||||| ||||||| ||||| ||||| |||| | || ||| ||||||| || |
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| T |
11982567 |
cagtattttctcttaacaaagaaagtgccccaggtcctgatggatttggagcacttttttatcaaactttttgggatattataaaaaatgatgtttctaa |
11982666 |
T |
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| Q |
115 |
agctgtcattgannnnnnnaaaactggttggattttacctagctttaattctaataatattgtgcttattcctaagactaaccatgca |
202 |
Q |
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| T |
11982667 |
cgctgttttagaatttttcaaaactggttggattttgccaaattttaactctaataatat--ttcttattccaaagactaaccatgca |
11982752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0066 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0066
Description:
Target: scaffold0066; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 136 - 195
Target Start/End: Complemental strand, 37404 - 37345
Alignment:
| Q |
136 |
aactggttggattttacctagctttaattctaataatattgtgcttattcctaagactaa |
195 |
Q |
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|||||||||||||||||||| | ||| ||||||||||||| |||||||| |||||||| |
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| T |
37404 |
aactggttggattttacctaattacaatgctaataatattgttcttattccaaagactaa |
37345 |
T |
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