View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4193_low_14 (Length: 429)

Name: NF4193_low_14
Description: NF4193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4193_low_14
NF4193_low_14
[»] chr1 (4 HSPs)
chr1 (1-417)||(43966778-43967203)
chr1 (39-81)||(34184678-34184720)
chr1 (43-87)||(2445884-2445928)
chr1 (38-74)||(18946048-18946084)
[»] chr5 (5 HSPs)
chr5 (39-87)||(21319946-21319994)
chr5 (34-81)||(37313258-37313305)
chr5 (45-87)||(10009842-10009884)
chr5 (43-81)||(30405702-30405740)
chr5 (39-75)||(30080514-30080550)
[»] chr6 (6 HSPs)
chr6 (39-90)||(6751880-6751931)
chr6 (39-88)||(19369827-19369876)
chr6 (43-82)||(10157998-10158037)
chr6 (43-81)||(13595923-13595961)
chr6 (39-80)||(10031580-10031621)
chr6 (39-88)||(22745967-22746016)
[»] chr2 (4 HSPs)
chr2 (39-90)||(43586003-43586054)
chr2 (39-81)||(18512149-18512191)
chr2 (43-88)||(45000846-45000891)
chr2 (39-90)||(37211883-37211934)
[»] chr8 (6 HSPs)
chr8 (39-80)||(27733857-27733898)
chr8 (39-83)||(31119097-31119141)
chr8 (41-86)||(1639502-1639547)
chr8 (39-87)||(24295138-24295186)
chr8 (43-87)||(31548294-31548338)
chr8 (41-81)||(42874534-42874574)
[»] chr7 (7 HSPs)
chr7 (39-79)||(2143862-2143902)
chr7 (39-81)||(2144546-2144588)
chr7 (39-81)||(5937428-5937470)
chr7 (43-81)||(35917387-35917425)
chr7 (39-88)||(1885583-1885632)
chr7 (43-80)||(31808517-31808554)
chr7 (43-80)||(44172898-44172935)
[»] chr3 (4 HSPs)
chr3 (43-87)||(40150572-40150616)
chr3 (43-88)||(9210825-9210870)
chr3 (43-88)||(44427855-44427900)
chr3 (41-81)||(4946211-4946251)
[»] chr4 (6 HSPs)
chr4 (39-90)||(13117439-13117490)
chr4 (39-90)||(13307887-13307938)
chr4 (43-81)||(54759749-54759787)
chr4 (43-87)||(6844646-6844688)
chr4 (39-88)||(27624092-27624141)
chr4 (42-82)||(37496717-37496757)
[»] scaffold0581 (1 HSPs)
scaffold0581 (43-81)||(7047-7085)
[»] scaffold0373 (1 HSPs)
scaffold0373 (43-87)||(1219-1261)
[»] scaffold0314 (1 HSPs)
scaffold0314 (39-87)||(8958-9006)
[»] scaffold0011 (1 HSPs)
scaffold0011 (43-87)||(240022-240066)


Alignment Details
Target: chr1 (Bit Score: 378; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 1 - 417
Target Start/End: Original strand, 43966778 - 43967203
Alignment:
Q  1 ggacactaaaatgcattggacggacacaacactgacacaaattttgagaaaatgatacaattcaatgtaatcacatgtgtcgatgtcggatactacac-- 98  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||      
T  43966778 ggacactaaaatgcattggacggacacaacactaacacaaattttgagaaaatgatacaattcaatgtaatcacatgtgttggtgtcggatactacacgt 43966877  T
Q  99 -------aagtgtcgatgcagtagatacattgaacatgtcttcaatgctacaaagattcctatacattgattgtataaggctaagtgttgggtagttgtt 191  Q
           |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43966878 gtcagagaagtgtcgatgcagtagagacattgaacatgtcttcaatgctacaaagattcctatacattgattgtataaggctaagtgttgggtagttgtt 43966977  T
Q  192 gatgttttgttctacctacataggatgactcattagatgtgttctgagattcattattaatatcataagttatgttgaatgttaatccagatgaacaatt 291  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43966978 gatgttttgttctacctacataggatgactcattagatgtgttctgagattcattattaatatcataagttatgttgaatgttaatccagatgaacaatt 43967077  T
Q  292 gtaaggatgaaggttgatgttgtccttgtttatagctgtatctattaattaattatatcaacccatttttatgtatttattttaacggcatattaacgtt 391  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43967078 gtaaggatgaaggttgatgttgtccttgtttatagctgtatctattaattaattatatcaacccatttttatgtatttattttaacggcatattaacgtt 43967177  T
Q  392 gggggtaatacgttggtcattatatt 417  Q
    ||||||||||||||||||||||||||    
T  43967178 gggggtaatacgttggtcattatatt 43967203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 39 - 81
Target Start/End: Original strand, 34184678 - 34184720
Alignment:
Q  39 aaattttgagaaaatgatacaattcaatgtaatcacatgtgtc 81  Q
    |||| |||||||||| ||| |||||||||||||||||||||||    
T  34184678 aaatcttgagaaaataatataattcaatgtaatcacatgtgtc 34184720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 87
Target Start/End: Original strand, 2445884 - 2445928
Alignment:
Q  43 tttgagaaaatgatacaattcaatgtaatcacatgtgtcgatgtc 87  Q
    ||||||||||||| | |||||||| |||||| |||||||||||||    
T  2445884 tttgagaaaatgacataattcaatttaatcatatgtgtcgatgtc 2445928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 74
Target Start/End: Complemental strand, 18946084 - 18946048
Alignment:
Q  38 caaattttgagaaaatgatacaattcaatgtaatcac 74  Q
    |||||||||||||||||| | ||||||||||||||||    
T  18946084 caaattttgagaaaatgacataattcaatgtaatcac 18946048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 39 - 87
Target Start/End: Complemental strand, 21319994 - 21319946
Alignment:
Q  39 aaattttgagaaaatgatacaattcaatgtaatcacatgtgtcgatgtc 87  Q
    ||||||||| ||||||||| ||||||||||||||||| |||||||||||    
T  21319994 aaattttgaaaaaatgatataattcaatgtaatcacaagtgtcgatgtc 21319946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 34 - 81
Target Start/End: Complemental strand, 37313305 - 37313258
Alignment:
Q  34 gacacaaattttgagaaaatgatacaattcaatgtaatcacatgtgtc 81  Q
    |||||| | ||||||||||| | |||||||||||||||||||||||||    
T  37313305 gacacataatttgagaaaattagacaattcaatgtaatcacatgtgtc 37313258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 45 - 87
Target Start/End: Original strand, 10009842 - 10009884
Alignment:
Q  45 tgagaaaatgatacaattcaatgtaatcacatgtgtcgatgtc 87  Q
    ||||||||||| | |||||||||||||||||||||||| ||||    
T  10009842 tgagaaaatgacataattcaatgtaatcacatgtgtcgttgtc 10009884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 43 - 81
Target Start/End: Original strand, 30405702 - 30405740
Alignment:
Q  43 tttgagaaaatgatacaattcaatgtaatcacatgtgtc 81  Q
    ||||||||||| | |||||||||||||||||||||||||    
T  30405702 tttgagaaaattagacaattcaatgtaatcacatgtgtc 30405740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 75
Target Start/End: Complemental strand, 30080550 - 30080514
Alignment:
Q  39 aaattttgagaaaatgatacaattcaatgtaatcaca 75  Q
    ||||||||||||||||| | |||||||||||||||||    
T  30080550 aaattttgagaaaatgacataattcaatgtaatcaca 30080514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 39 - 90
Target Start/End: Complemental strand, 6751931 - 6751880
Alignment:
Q  39 aaattttgagaaaatgatacaattcaatgtaatcacatgtgtcgatgtcgga 90  Q
    ||||||||||||||||| | ||||||||||||||||| |||||| |||||||    
T  6751931 aaattttgagaaaatgacataattcaatgtaatcacaagtgtcggtgtcgga 6751880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 39 - 88
Target Start/End: Original strand, 19369827 - 19369876
Alignment:
Q  39 aaattttgagaaaatgatacaattcaatgtaatcacatgtgtcgatgtcg 88  Q
    ||||||||||||||||| | ||||||||||||||||| |||||| |||||    
T  19369827 aaattttgagaaaatgacataattcaatgtaatcacaagtgtcggtgtcg 19369876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 43 - 82
Target Start/End: Original strand, 10157998 - 10158037
Alignment:
Q  43 tttgagaaaatgatacaattcaatgtaatcacatgtgtcg 82  Q
    ||||||||||||| | ||||||||||||||||||||||||    
T  10157998 tttgagaaaatgacataattcaatgtaatcacatgtgtcg 10158037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 43 - 81
Target Start/End: Original strand, 13595923 - 13595961
Alignment:
Q  43 tttgagaaaatgatacaattcaatgtaatcacatgtgtc 81  Q
    |||||| ||||||||||||||||| ||||||||||||||    
T  13595923 tttgagcaaatgatacaattcaatataatcacatgtgtc 13595961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 80
Target Start/End: Original strand, 10031580 - 10031621
Alignment:
Q  39 aaattttgagaaaatgatacaattcaatgtaatcacatgtgt 80  Q
    ||||||||||||||||| | ||||||||||||||||| ||||    
T  10031580 aaattttgagaaaatgacataattcaatgtaatcacaagtgt 10031621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 88
Target Start/End: Original strand, 22745967 - 22746016
Alignment:
Q  39 aaattttgagaaaatgatacaattcaatgtaatcacatgtgtcgatgtcg 88  Q
    |||||||||||||||| || | ||||||||||||||| |||||| |||||    
T  22745967 aaattttgagaaaatgttatatttcaatgtaatcacaagtgtcggtgtcg 22746016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 39 - 90
Target Start/End: Complemental strand, 43586054 - 43586003
Alignment:
Q  39 aaattttgagaaaatgatacaattcaatgtaatcacatgtgtcgatgtcgga 90  Q
    ||||||||||||||||| | ||||||||||||||||| |||||| |||||||    
T  43586054 aaattttgagaaaatgacataattcaatgtaatcacaagtgtcggtgtcgga 43586003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 39 - 81
Target Start/End: Complemental strand, 18512191 - 18512149
Alignment:
Q  39 aaattttgagaaaatgatacaattcaatgtaatcacatgtgtc 81  Q
    ||||||||||||||| ||| |||||||||||||||||||||||    
T  18512191 aaattttgagaaaataatataattcaatgtaatcacatgtgtc 18512149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 43 - 88
Target Start/End: Complemental strand, 45000891 - 45000846
Alignment:
Q  43 tttgagaaaatgatacaattcaatgtaatcacatgtgtcgatgtcg 88  Q
    ||||||||||||| ||||||||||||||||| |||||||| |||||    
T  45000891 tttgagaaaatgacacaattcaatgtaatcatatgtgtcggtgtcg 45000846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 39 - 90
Target Start/End: Complemental strand, 37211934 - 37211883
Alignment:
Q  39 aaattttgagaaaatgatacaattcaatgtaatcacatgtgtcgatgtcgga 90  Q
    |||||| |||||||||| ||||||||||||||| ||| ||||| ||||||||    
T  37211934 aaatttcgagaaaatgacacaattcaatgtaattacaagtgtctatgtcgga 37211883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 39 - 80
Target Start/End: Original strand, 27733857 - 27733898
Alignment:
Q  39 aaattttgagaaaatgatacaattcaatgtaatcacatgtgt 80  Q
    ||||||||||||||||||| ||||||||||||||||| ||||    
T  27733857 aaattttgagaaaatgatataattcaatgtaatcacaagtgt 27733898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 83
Target Start/End: Original strand, 31119097 - 31119141
Alignment:
Q  39 aaattttgagaaaatgatacaattcaatgtaatcacatgtgtcga 83  Q
    ||||||||||||||||| | ||||||||||||||||| |||||||    
T  31119097 aaattttgagaaaatgacataattcaatgtaatcacaagtgtcga 31119141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 86
Target Start/End: Original strand, 1639502 - 1639547
Alignment:
Q  41 attttgagaaaatgatacaattcaatgtaatcacatgtgtcgatgt 86  Q
    ||||||||||||||| | ||||||||||||| || |||||||||||    
T  1639502 attttgagaaaatgacataattcaatgtaataacgtgtgtcgatgt 1639547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 87
Target Start/End: Complemental strand, 24295186 - 24295138
Alignment:
Q  39 aaattttgagaaaatgatacaattcaatgtaatcacatgtgtcgatgtc 87  Q
    ||||| ||||||||||| |||||| |||||||||||| |||||| ||||    
T  24295186 aaattgtgagaaaatgacacaatttaatgtaatcacaagtgtcggtgtc 24295138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 87
Target Start/End: Complemental strand, 31548338 - 31548294
Alignment:
Q  43 tttgagaaaatgatacaattcaatgtaatcacatgtgtcgatgtc 87  Q
    ||||| ||||||| | |||||||||||||||||||||||| ||||    
T  31548338 tttgataaaatgacataattcaatgtaatcacatgtgtcggtgtc 31548294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 41 - 81
Target Start/End: Original strand, 42874534 - 42874574
Alignment:
Q  41 attttgagaaaatgatacaattcaatgtaatcacatgtgtc 81  Q
    ||||||||||||||| | ||||||||||||||||| |||||    
T  42874534 attttgagaaaatgacataattcaatgtaatcacaagtgtc 42874574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 79
Target Start/End: Complemental strand, 2143902 - 2143862
Alignment:
Q  39 aaattttgagaaaatgatacaattcaatgtaatcacatgtg 79  Q
    ||||||||||||||||| | |||||||||||||||||||||    
T  2143902 aaattttgagaaaatgacataattcaatgtaatcacatgtg 2143862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 39 - 81
Target Start/End: Complemental strand, 2144588 - 2144546
Alignment:
Q  39 aaattttgagaaaatgatacaattcaatgtaatcacatgtgtc 81  Q
    ||||||||||||||||| | ||||||||||||||||| |||||    
T  2144588 aaattttgagaaaatgacataattcaatgtaatcacacgtgtc 2144546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 39 - 81
Target Start/End: Complemental strand, 5937470 - 5937428
Alignment:
Q  39 aaattttgagaaaatgatacaattcaatgtaatcacatgtgtc 81  Q
    ||||||||||||||||| | ||||||||||||||||| |||||    
T  5937470 aaattttgagaaaatgacataattcaatgtaatcacaagtgtc 5937428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 43 - 81
Target Start/End: Complemental strand, 35917425 - 35917387
Alignment:
Q  43 tttgagaaaatgatacaattcaatgtaatcacatgtgtc 81  Q
    ||||||||||||||| |||||||||||||||||| ||||    
T  35917425 tttgagaaaatgatataattcaatgtaatcacatttgtc 35917387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 88
Target Start/End: Original strand, 1885583 - 1885632
Alignment:
Q  39 aaattttgagaaaatgatacaattcaatgtaatcacatgtgtcgatgtcg 88  Q
    ||||||||| ||||||| | ||||||||||||||||| |||||| |||||    
T  1885583 aaattttgaaaaaatgacataattcaatgtaatcacaagtgtcggtgtcg 1885632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 80
Target Start/End: Complemental strand, 31808554 - 31808517
Alignment:
Q  43 tttgagaaaatgatacaattcaatgtaatcacatgtgt 80  Q
    ||||||||||||| |||| |||||||||||||||||||    
T  31808554 tttgagaaaatgacacaagtcaatgtaatcacatgtgt 31808517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 80
Target Start/End: Complemental strand, 44172935 - 44172898
Alignment:
Q  43 tttgagaaaatgatacaattcaatgtaatcacatgtgt 80  Q
    ||||||||||||| | ||||||||||||||||||||||    
T  44172935 tttgagaaaatgacataattcaatgtaatcacatgtgt 44172898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 87
Target Start/End: Complemental strand, 40150616 - 40150572
Alignment:
Q  43 tttgagaaaatgatacaattcaatgtaatcacatgtgtcgatgtc 87  Q
    ||||||||||||||| ||||||||||||||| |||||||| ||||    
T  40150616 tttgagaaaatgatataattcaatgtaatcatatgtgtcggtgtc 40150572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 88
Target Start/End: Complemental strand, 9210870 - 9210825
Alignment:
Q  43 tttgagaaaatgatacaattcaatgtaatcacatgtgtcgatgtcg 88  Q
    ||||||||||||| | ||||||||| ||||||||||||| ||||||    
T  9210870 tttgagaaaatgacataattcaatggaatcacatgtgtcaatgtcg 9210825  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 88
Target Start/End: Original strand, 44427855 - 44427900
Alignment:
Q  43 tttgagaaaatgatacaattcaatgtaatcacatgtgtcgatgtcg 88  Q
    ||||||||||||| | ||| |||||||||||||||||||| |||||    
T  44427855 tttgagaaaatgacataatccaatgtaatcacatgtgtcggtgtcg 44427900  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 41 - 81
Target Start/End: Complemental strand, 4946251 - 4946211
Alignment:
Q  41 attttgagaaaatgatacaattcaatgtaatcacatgtgtc 81  Q
    ||||| ||||||||||| |||| ||||||||||||||||||    
T  4946251 attttaagaaaatgatataattgaatgtaatcacatgtgtc 4946211  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 39 - 90
Target Start/End: Original strand, 13117439 - 13117490
Alignment:
Q  39 aaattttgagaaaatgatacaattcaatgtaatcacatgtgtcgatgtcgga 90  Q
    |||||| |||||||||| | ||||||||||||||||| |||||| |||||||    
T  13117439 aaatttggagaaaatgacaaaattcaatgtaatcacaagtgtcggtgtcgga 13117490  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 39 - 90
Target Start/End: Original strand, 13307887 - 13307938
Alignment:
Q  39 aaattttgagaaaatgatacaattcaatgtaatcacatgtgtcgatgtcgga 90  Q
    ||||||||||||||||| | ||||||||||||||||| |||| | |||||||    
T  13307887 aaattttgagaaaatgacataattcaatgtaatcacaagtgttggtgtcgga 13307938  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 43 - 81
Target Start/End: Complemental strand, 54759787 - 54759749
Alignment:
Q  43 tttgagaaaatgatacaattcaatgtaatcacatgtgtc 81  Q
    ||||||||||| | |||||||||||||||||||||||||    
T  54759787 tttgagaaaattagacaattcaatgtaatcacatgtgtc 54759749  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 87
Target Start/End: Complemental strand, 6844688 - 6844646
Alignment:
Q  43 tttgagaaaatgatacaattcaatgtaatcacatgtgtcgatgtc 87  Q
    |||||||||||||  ||||| ||||||||||||||||||||||||    
T  6844688 tttgagaaaatga--caattgaatgtaatcacatgtgtcgatgtc 6844646  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 88
Target Start/End: Complemental strand, 27624141 - 27624092
Alignment:
Q  39 aaattttgagaaaatgatacaattcaatgtaatcacatgtgtcgatgtcg 88  Q
    ||||||||| |||| |||| |||||||| ||||||||||||||| |||||    
T  27624141 aaattttgataaaaggatataattcaatctaatcacatgtgtcggtgtcg 27624092  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 82
Target Start/End: Original strand, 37496717 - 37496757
Alignment:
Q  42 ttttgagaaaatgatacaattcaatgtaatcacatgtgtcg 82  Q
    |||||||||||||| | ||||||||||||||||| ||||||    
T  37496717 ttttgagaaaatgacataattcaatgtaatcacaagtgtcg 37496757  T

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Target: scaffold0581 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0581
Description:

Target: scaffold0581; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 43 - 81
Target Start/End: Complemental strand, 7085 - 7047
Alignment:
Q  43 tttgagaaaatgatacaattcaatgtaatcacatgtgtc 81  Q
    ||||||||||| | |||||||||||||||||||||||||    
T  7085 tttgagaaaattagacaattcaatgtaatcacatgtgtc 7047  T

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Target: scaffold0373 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0373
Description:

Target: scaffold0373; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 87
Target Start/End: Complemental strand, 1261 - 1219
Alignment:
Q  43 tttgagaaaatgatacaattcaatgtaatcacatgtgtcgatgtc 87  Q
    |||||||||||||  ||||| ||||||||||||||||||||||||    
T  1261 tttgagaaaatga--caattgaatgtaatcacatgtgtcgatgtc 1219  T

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Target: scaffold0314 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0314
Description:

Target: scaffold0314; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 87
Target Start/End: Original strand, 8958 - 9006
Alignment:
Q  39 aaattttgagaaaatgatacaattcaatgtaatcacatgtgtcgatgtc 87  Q
    ||||||||||||||||| | ||||||| ||||||||| |||||| ||||    
T  8958 aaattttgagaaaatgacataattcaacgtaatcacaagtgtcggtgtc 9006  T

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Target: scaffold0011 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 87
Target Start/End: Complemental strand, 240066 - 240022
Alignment:
Q  43 tttgagaaaatgatacaattcaatgtaatcacatgtgtcgatgtc 87  Q
    ||||||||||| ||| ||||||||||||||| |||||||| ||||    
T  240066 tttgagaaaataatataattcaatgtaatcatatgtgtcggtgtc 240022  T

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