View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4193_low_16 (Length: 401)
Name: NF4193_low_16
Description: NF4193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4193_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Complemental strand, 46909419 - 46909035
Alignment:
| Q |
1 |
attcaatgaagtaataagaattatttaaaattttgtcnnnnnnnnnngtattatttaaattgacaaactggccaccaaaagcgatgtcttattcactcct |
100 |
Q |
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| T |
46909419 |
attcaatgaagtaataagaattatttaaaattttgtcaaaaaaaaaagtattatttaaattgacaaactggccaccaaaagcgatgtcttattcactcct |
46909320 |
T |
|
| Q |
101 |
cctatgagtggtaacaattatgaatcctgaagcagattaatgaaacacacaatccttgccaagaagttgaaattcattagaagatgaccctctcttaact |
200 |
Q |
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| T |
46909319 |
---atgagtggtaacaattatgaatcctgaagcagattaatgaaacacacaatccttaccaagaagttgaaattcattagaagatgaccctctcttaact |
46909223 |
T |
|
| Q |
201 |
ctttgatgcttggaaaaggtgtaatggaattctcattttgtggatatttggaaccgttgcactgaaaaatcacagagcactgtgcacgctgaaagtgcct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
46909222 |
ttttgatgcttggaaaaggtgtaatggaattctcattttgtggatatttggaaccgttgcactgaaaaatcgcagagcactgtgcacgctgaaagtgcct |
46909123 |
T |
|
| Q |
301 |
atgatctttggcataatctgaaagattatttttcgaacttgatgtcagctattttacaagaattacattcttttccccaaggtgagaa |
388 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46909122 |
atgatctttggcataatctgaaagattatttttcgaacttgatgtcagctattttacaagaattacattcttttccccaaggtgagaa |
46909035 |
T |
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