View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4193_low_17 (Length: 393)
Name: NF4193_low_17
Description: NF4193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4193_low_17 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 348; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 14 - 372
Target Start/End: Complemental strand, 29007813 - 29007454
Alignment:
| Q |
14 |
cagagaaaaaactcaaaataagaggtgggaacaatgtaaagtgtatttttcgagacttgaa-ttaaaatttgtaataacgaacggttcattggatatgtg |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29007813 |
cagagaaaaaactcaaaataagaggtgggaacaatgtaaagtgtatttttcgagacttgaaattaaaatttgtaataacgaacggttcattggatatgtg |
29007714 |
T |
|
| Q |
113 |
atgattggcagtgtttacttacacaccgttatacgacgtgatcgaggtaaaccaacaaggctacaacacatgtacaatagcaaatgccatttccacacac |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29007713 |
atgattggcagtgtttacttacacaccgttatacgacgtgatcgaggtaaaccaacaaggctacaacacatgtacaatagcaaatgccatttccacacac |
29007614 |
T |
|
| Q |
213 |
aacactggagaaacagtgatccacctcactgaatcaggaacacgctacttcgtttgtggcagaatgggtcattgtcaacaaggcctcaaacttgaagtca |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29007613 |
aacactggagaaacagtgatccacctcactgaatcaggaacacgctacttcgtttgtggcagaatgggtcattgtcaacaaggcctcaaacttgaagtca |
29007514 |
T |
|
| Q |
313 |
aagttcaagctcagtccaacaacactggaacttctcctccacctagttctccaccacgcc |
372 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
29007513 |
aagttcaagctcagtccaacaacactggaacttctcctccacctagttctgcaccacgcc |
29007454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 28 - 337
Target Start/End: Original strand, 21409421 - 21409730
Alignment:
| Q |
28 |
aaaataagaggtgggaacaatgtaaagtgtatttttcgagact-tgaattaaaatttgtaataacgaacggttcattggatatgtgatgattggcagtgt |
126 |
Q |
| |
|
|||||||| || ||||||| |||||||||||||||||| | | |||||||||| |||||||| || | |||||||||||||||||||||| |||||| |
|
|
| T |
21409421 |
aaaataagtggcaggaacaaagtaaagtgtatttttcgaatgtctaaattaaaattggtaataacaaatg-ttcattggatatgtgatgattgacagtgt |
21409519 |
T |
|
| Q |
127 |
ttacttacacaccgttatacgacgtgatcgaggtaaaccaacaaggctacaacacatgtacaatagcaaatgccatttccacacacaacactggagaaac |
226 |
Q |
| |
|
|||||||||||||||| |||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||| | |||||||| |
|
|
| T |
21409520 |
ttacttacacaccgttgtacgacgtaattgaggtaaaccaacaagggtacaacacatgtacaatagcaaatgccatttcgacatacaactcaggagaaac |
21409619 |
T |
|
| Q |
227 |
agtgatccacctcactgaatcaggaacacgctacttcgtttgtggcagaatgggtcattgtcaacaaggcctcaaacttgaagtcaaagttcaagctcag |
326 |
Q |
| |
|
|||||||||| ||| ||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
21409620 |
agtgatccacgtcattgaatcaggaaaacgctacttcgtttgtggcagaatgggccattgccaacaaggcctgaaactcaaagtcaaagttcaagctcag |
21409719 |
T |
|
| Q |
327 |
tccaacaacac |
337 |
Q |
| |
|
||||||||||| |
|
|
| T |
21409720 |
tccaacaacac |
21409730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 28 - 244
Target Start/End: Original strand, 21461710 - 21461926
Alignment:
| Q |
28 |
aaaataagaggtgggaacaatgtaaagtgtatttttcgagact-tgaattaaaatttgtaataacgaacggttcattggatatgtgatgattggcagtgt |
126 |
Q |
| |
|
|||||||| || ||||||| ||||||||||||||| || | | |||||||||| |||||||| || | |||||||||||||||||||||| ||| || |
|
|
| T |
21461710 |
aaaataagtggcaggaacaaagtaaagtgtattttttgaatgtataaattaaaattagtaataacaaatg-ttcattggatatgtgatgattgacagcgt |
21461808 |
T |
|
| Q |
127 |
ttacttacacaccgttatacgacgtgatcgaggtaaaccaacaaggctacaacacatgtacaatagcaaatgccatttccacacacaacactggagaaac |
226 |
Q |
| |
|
|||||||||||||||| ||| |||| || ||||||||||||||||| ||||||||||||||||||||||| ||| |||| ||| ||||| ||||||||| |
|
|
| T |
21461809 |
ttacttacacaccgttgtacaacgtaattgaggtaaaccaacaagggtacaacacatgtacaatagcaaacgccgtttcgacatacaactctggagaaat |
21461908 |
T |
|
| Q |
227 |
agtgatccacctcactga |
244 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
21461909 |
agtgatccacctcactga |
21461926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 260 - 368
Target Start/End: Original strand, 21465429 - 21465537
Alignment:
| Q |
260 |
cttcgtttgtggcagaatgggtcattgtcaacaaggcctcaaacttgaagtcaaagttcaagctcagtccaacaacactggaacttctcctccacctagt |
359 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
21465429 |
cttcgtttgtggcagaatgggccattgccaacaaggcctgaaactcaaagtcaaagttcaagctcagtccaacaacactggaacttctcctccacctatt |
21465528 |
T |
|
| Q |
360 |
tctccacca |
368 |
Q |
| |
|
||||||||| |
|
|
| T |
21465529 |
tctccacca |
21465537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University