View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4193_low_21 (Length: 356)
Name: NF4193_low_21
Description: NF4193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4193_low_21 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 125; Significance: 3e-64; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 15 - 147
Target Start/End: Complemental strand, 35817476 - 35817344
Alignment:
| Q |
15 |
cacagacaggtcaaaaagtcatactagtacatattttccatccattgcgtgctccttcctttactaccccattcgctttcaatcaatcacatgcactcta |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
35817476 |
cacagacaggtcaaaaagtcatactagtacatattttccatccattgcgtgctccttcctttactaccccattcactttcaatcaatcacatgcactcta |
35817377 |
T |
|
| Q |
115 |
ggtgtcttttactaatttatttcatcttctaat |
147 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |
|
|
| T |
35817376 |
ggtgtcttttactaatttattttatcttctaat |
35817344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 149 - 340
Target Start/End: Complemental strand, 35817286 - 35817098
Alignment:
| Q |
149 |
gttgaatttctactatttgataaaattaatggttgaactaatttatttataaatataaaatgacannnnnnnc-ctagtgagactaccagggtgaaatta |
247 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||| |||||| |||| ||| |||| |||||||| ||||||||||| |
|
|
| T |
35817286 |
gttgaatgtctactatttgataaaattaatggttgaactaatttat----aaatatgaaatcacatttttttttctagcgagactacaagggtgaaattg |
35817191 |
T |
|
| Q |
248 |
agatcagaaataataagatataagttttaagtcatatgctaattgatttaacttatcaaaaaacgatataagatgataaaaataagttataag |
340 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
35817190 |
agatcaaaaataataagatataagttttaagtcatatgctaattgatttaacttatcaaaaaacgatataagatggtaaaaataagttataag |
35817098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 194
Target Start/End: Original strand, 25142252 - 25142296
Alignment:
| Q |
150 |
ttgaatttctactatttgataaaattaatggttgaactaatttat |
194 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||||||| ||||| |
|
|
| T |
25142252 |
ttgaatttgtaatatttgataaaattaatggttgaactattttat |
25142296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 193
Target Start/End: Complemental strand, 19087473 - 19087425
Alignment:
| Q |
145 |
aatggttgaatttctactatttgataaaattaatggttgaactaattta |
193 |
Q |
| |
|
|||| |||||||| || |||||||||||||||| ||||||| ||||||| |
|
|
| T |
19087473 |
aatgattgaatttatagtatttgataaaattaacggttgaattaattta |
19087425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 340
Target Start/End: Original strand, 44235486 - 44235566
Alignment:
| Q |
260 |
ataagatataagttttaagtcatatgctaattgatttaacttatcaaaaaacgatataagatgataaaaataagttataag |
340 |
Q |
| |
|
||||| |||||| ||||| | ||||| || |||| ||||||||||||||||| |||||| | || |||||||| |||||| |
|
|
| T |
44235486 |
ataagttataagctttaatttatatgttacttgaattaacttatcaaaaaacactataagctcattaaaataagctataag |
44235566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 340
Target Start/End: Complemental strand, 21366509 - 21366441
Alignment:
| Q |
272 |
ttttaagtcatatgctaattgatttaacttatcaaaaaacgatataagatgataaaaataagttataag |
340 |
Q |
| |
|
|||||||| ||| | || |||| ||||||| |||||||||| || ||| || ||||||||||||||||| |
|
|
| T |
21366509 |
ttttaagttataagttacttgaattaacttgtcaaaaaacgttacaagttggtaaaaataagttataag |
21366441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University