View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4193_low_24 (Length: 343)

Name: NF4193_low_24
Description: NF4193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4193_low_24
NF4193_low_24
[»] chr1 (3 HSPs)
chr1 (20-301)||(45936192-45936473)
chr1 (151-301)||(45924375-45924525)
chr1 (161-299)||(26303197-26303335)
[»] chr3 (2 HSPs)
chr3 (20-148)||(15818211-15818339)
chr3 (20-148)||(15831321-15831448)
[»] chr4 (3 HSPs)
chr4 (25-87)||(5164621-5164683)
chr4 (20-73)||(5186470-5186523)
chr4 (35-87)||(5192063-5192115)
[»] chr7 (1 HSPs)
chr7 (153-293)||(42240150-42240290)
[»] chr8 (1 HSPs)
chr8 (185-293)||(12631272-12631380)


Alignment Details
Target: chr1 (Bit Score: 270; Significance: 1e-151; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 20 - 301
Target Start/End: Original strand, 45936192 - 45936473
Alignment:
Q  20 acttggaacatagaacaggaatagaaaattcaaatacaaaatctaggcaatggctaaaacagcatttttattttacattttgaattgacaaatttatgtc 119  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  45936192 acttggaacatagaacaggaatggaaaattcaaatacaaaatctaggcaatggctaaaacagcatttttattttacattttgaaatgacatatttatgtc 45936291  T
Q  120 agcattgtatatgtatcatatgagtatagattcacaaagcatgtgatgagatatatgttgtgggagaaggtgaaacactcaacacaatcagtgaaaagtg 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45936292 agcattgtatatgtatcatatgagtatagattcacaaagcatgtgatgagatatatgttgtgggagaaggtgaaacactcaacacaatcagtgaaaagtg 45936391  T
Q  220 tggtgacccgtttattgtagagaggaatccacatatccatgatccagatgatgttttccctggtcttgttatcagaattatc 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45936392 tggtgacccgtttattgtagagaggaatccacatatccatgatccagatgatgttttccctggtcttgttatcagaattatc 45936473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 151 - 301
Target Start/End: Original strand, 45924375 - 45924525
Alignment:
Q  151 tcacaaagcatgtgatgagatatatgttgtgggagaaggtgaaacactcaacacaatcagtgaaaagtgtggtgacccgtttattgtagagaggaatcca 250  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45924375 tcacaaagcatgtgatgagatatatgttgtgggagaaggtgaaacactcaacacaatcagtgaaaagtgtggtgacccgtttattgtagagaggaatcca 45924474  T
Q  251 catatccatgatccagatgatgttttccctggtcttgttatcagaattatc 301  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45924475 catatccatgatccagatgatgttttccctggtcttgttatcagaattatc 45924525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 161 - 299
Target Start/End: Original strand, 26303197 - 26303335
Alignment:
Q  161 tgtgatgagatatatgttgtgggagaaggtgaaacactcaacacaatcagtgaaaagtgtggtgacccgtttattgtagagaggaatccacatatccatg 260  Q
    |||||||||||||| ||||| || || || || |||||  | ||||| ||||||||||||||||| || | |||||| ||   |||||||||||| ||||    
T  26303197 tgtgatgagatatacgttgttggcgagggagagacacttcaaacaataagtgaaaagtgtggtgatccttatattgttgaagagaatccacatattcatg 26303296  T
Q  261 atccagatgatgttttccctggtcttgttatcagaatta 299  Q
    |||| ||||||||||||||||| |||||||||| |||||    
T  26303297 atcctgatgatgttttccctggccttgttatcaaaatta 26303335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 113; Significance: 4e-57; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 20 - 148
Target Start/End: Original strand, 15818211 - 15818339
Alignment:
Q  20 acttggaacatagaacaggaatagaaaattcaaatacaaaatctaggcaatggctaaaacagcatttttattttacattttgaattgacaaatttatgtc 119  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  15818211 acttagaacatagaacaggaatggaaaattcaaatacaaaatctaggcaatggctaaaacagcatttttattttacattttgaaatgacatatttatgtc 15818310  T
Q  120 agcattgtatatgtatcatatgagtatag 148  Q
    |||||||||||||||||||||||||||||    
T  15818311 agcattgtatatgtatcatatgagtatag 15818339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 20 - 148
Target Start/End: Original strand, 15831321 - 15831448
Alignment:
Q  20 acttggaacatagaacaggaatagaaaattcaaatacaaaatctaggcaatggctaaaacagcatttttattttacattttgaattgacaaatttatgtc 119  Q
    |||| |||| |||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||| |||||||||    
T  15831321 acttagaacgtagaacaggaatggataattcaaatacaaaatctaggcaatggctaaa-cagcatttttatttttcattttgaaatgacatatttatgtc 15831419  T
Q  120 agcattgtatatgtatcatatgagtatag 148  Q
    |||||||||||||||||||||||||||||    
T  15831420 agcattgtatatgtatcatatgagtatag 15831448  T

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Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 25 - 87
Target Start/End: Original strand, 5164621 - 5164683
Alignment:
Q  25 gaacatagaacaggaatagaaaattcaaatacaaaatctaggcaatggctaaaacagcatttt 87  Q
    ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||    
T  5164621 gaacatagaacaggaatggaaaattcaaatacaaaatttaggcaatggctaaaacagcatttt 5164683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 5186470 - 5186523
Alignment:
Q  20 acttggaacatagaacaggaatagaaaattcaaatacaaaatctaggcaatggc 73  Q
    |||| |||||||||| |||||| |||||||||||||||||||||||||||||||    
T  5186470 acttagaacatagaagaggaatggaaaattcaaatacaaaatctaggcaatggc 5186523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 35 - 87
Target Start/End: Original strand, 5192063 - 5192115
Alignment:
Q  35 caggaatagaaaattcaaatacaaaatctaggcaatggctaaaacagcatttt 87  Q
    ||||||| ||||||||| ||| |||||||||||||||||||||||||||||||    
T  5192063 caggaatggaaaattcatataaaaaatctaggcaatggctaaaacagcatttt 5192115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 153 - 293
Target Start/End: Complemental strand, 42240290 - 42240150
Alignment:
Q  153 acaaagcatgtgatgagatatatgttgtgggagaaggtgaaacactcaacacaatcagtgaaaagtgtggtgacccgtttattgtagagaggaatccaca 252  Q
    ||||||| ||||||||||||||||| ||  | ||||| || || ||  | ||||| |||||||| |||||||| || |||||||||||   |||||||||    
T  42240290 acaaagcgtgtgatgagatatatgtggttcgtgaaggagagactcttcatacaataagtgaaaaatgtggtgatccatttattgtagaagagaatccaca 42240191  T
Q  253 tatccatgatccagatgatgttttccctggtcttgttatca 293  Q
    ||| ||||| |||||||||||||| || |||||||||||||    
T  42240190 tattcatgacccagatgatgtttttccaggtcttgttatca 42240150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 185 - 293
Target Start/End: Complemental strand, 12631380 - 12631272
Alignment:
Q  185 gaaggtgaaacactcaacacaatcagtgaaaagtgtggtgacccgtttattgtagagaggaatccacatatccatgatccagatgatgttttccctggtc 284  Q
    |||||||| ||||| |||||||| ||||| ||||||  ||| || |||||||| ||||  ||||| ||||| ||||| || |||||||| ||||||||||    
T  12631380 gaaggtgagacacttaacacaattagtgataagtgtaatgatccttttattgttgagaataatcctcatattcatgaccctgatgatgtcttccctggtc 12631281  T
Q  285 ttgttatca 293  Q
    |||||||||    
T  12631280 ttgttatca 12631272  T

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