View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4193_low_27 (Length: 342)
Name: NF4193_low_27
Description: NF4193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4193_low_27 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 3876640 - 3876314
Alignment:
| Q |
1 |
attgggatttacattgnnnnnnntgtgttattgaaaaatatggaatgcaagtaaatcatccatttgtgggttttgtgttgagaggaatggaaaggattta |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
3876640 |
attgggatttacattgaaaaaaatgtgttattgaaaaatatggaatgcaagtaaatcatccatttgtgtgttttgtgttgagaggaatggaaaggattta |
3876541 |
T |
|
| Q |
101 |
gctgggttgtgtgatagaataagaatttgtgtgatgtggtagaatctatagtgtaaaagggtggtttgaatgagtatcttccatggatttcaatttcatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3876540 |
gctgggttgtgtgatagaataagaatttgtgtgatgtggtagaatctatagtgtaaaagggtggtttgaatgagtatcttccatggatttcaatttcatg |
3876441 |
T |
|
| Q |
201 |
taaagatcaataaatgtaatggatttcaatttcttttaactctttgaatatagtatgttgatgtcgatttatatgcatgaccatgctgtttgaatcaaca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3876440 |
taaagatcaataaatgtaatggatttcaatttcttttaactctttgaatatagtatgttgatgtcgatttatatgcatgaccatgctgtttgaatcaaca |
3876341 |
T |
|
| Q |
301 |
tagtgcatgtctttgttgagttgttca |
327 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
3876340 |
tagtgcatgtctttgttgagttgttca |
3876314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University