View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4193_low_3 (Length: 629)

Name: NF4193_low_3
Description: NF4193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4193_low_3
NF4193_low_3
[»] chr3 (8 HSPs)
chr3 (370-609)||(38285389-38285628)
chr3 (18-316)||(38285729-38286026)
chr3 (215-316)||(4840866-4840965)
chr3 (312-347)||(38285648-38285683)
chr3 (571-601)||(8126201-8126231)
chr3 (554-607)||(20625272-20625325)
chr3 (575-607)||(14626703-14626735)
chr3 (569-601)||(21659207-21659239)
[»] chr8 (6 HSPs)
chr8 (18-147)||(28159595-28159724)
chr8 (215-316)||(28156958-28157057)
chr8 (544-601)||(10150908-10150965)
chr8 (569-606)||(13832077-13832114)
chr8 (569-602)||(44838843-44838876)
chr8 (571-607)||(42631812-42631848)
[»] chr6 (5 HSPs)
chr6 (18-147)||(14358665-14358794)
chr6 (215-316)||(13070101-13070200)
chr6 (215-316)||(14361258-14361357)
chr6 (150-181)||(14361196-14361227)
chr6 (569-607)||(28737860-28737898)
[»] chr4 (16 HSPs)
chr4 (534-607)||(37381088-37381158)
chr4 (518-569)||(53019132-53019183)
chr4 (534-607)||(38938074-38938146)
chr4 (569-601)||(16450228-16450260)
chr4 (518-569)||(30051339-30051390)
chr4 (518-569)||(55131629-55131680)
chr4 (569-607)||(33084786-33084824)
chr4 (569-607)||(42013179-42013217)
chr4 (574-608)||(50459382-50459416)
chr4 (569-602)||(49573917-49573950)
chr4 (570-602)||(11796623-11796655)
chr4 (575-607)||(17659540-17659572)
chr4 (571-607)||(24275288-24275324)
chr4 (569-601)||(30162680-30162712)
chr4 (569-601)||(53403030-53403062)
chr4 (569-601)||(55501241-55501273)
[»] chr7 (12 HSPs)
chr7 (517-607)||(33784093-33784183)
chr7 (569-607)||(46578298-46578336)
chr7 (571-607)||(5691547-5691583)
chr7 (569-607)||(24166296-24166334)
chr7 (569-607)||(39960307-39960345)
chr7 (518-571)||(35481878-35481931)
chr7 (571-607)||(3498327-3498363)
chr7 (534-566)||(9503992-9504024)
chr7 (569-597)||(24733184-24733212)
chr7 (569-601)||(27234927-27234959)
chr7 (571-607)||(27942396-27942432)
chr7 (571-607)||(46221111-46221147)
[»] chr2 (9 HSPs)
chr2 (537-607)||(31211750-31211820)
chr2 (569-607)||(4637076-4637114)
chr2 (570-607)||(19822411-19822448)
chr2 (570-607)||(19842632-19842669)
chr2 (569-601)||(10099621-10099653)
chr2 (571-607)||(27743687-27743723)
chr2 (571-607)||(29712520-29712556)
chr2 (571-607)||(30905195-30905231)
chr2 (571-607)||(38179027-38179063)
[»] chr1 (9 HSPs)
chr1 (518-567)||(47293368-47293417)
chr1 (518-559)||(47991880-47991921)
chr1 (571-607)||(15055026-15055062)
chr1 (543-598)||(33324088-33324143)
chr1 (553-607)||(34332981-34333035)
chr1 (570-607)||(36164027-36164064)
chr1 (569-601)||(21852476-21852508)
chr1 (569-601)||(24478704-24478736)
chr1 (569-601)||(31481904-31481936)
[»] chr5 (7 HSPs)
chr5 (569-607)||(30489165-30489203)
chr5 (511-569)||(22584325-22584383)
chr5 (534-567)||(25596509-25596542)
chr5 (569-601)||(15966682-15966714)
chr5 (569-601)||(36329119-36329151)
chr5 (571-607)||(36346866-36346902)
chr5 (571-607)||(40208548-40208584)
[»] scaffold0531 (1 HSPs)
scaffold0531 (518-569)||(7002-7053)


Alignment Details
Target: chr3 (Bit Score: 174; Significance: 3e-93; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 370 - 609
Target Start/End: Complemental strand, 38285628 - 38285389
Alignment:
Q  370 tgataatgttgagaagcatagtagagtctaattatagaaaaataaactaaatgaaaaatgaactttataagtttagtggtcataactaaacttacgacat 469  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  38285628 tgatcatgttgagaagcatagtagagtctaattatagaaaaataaattaaatgaaaaatgaactttataagtttagtgatcataactaaacttacgacat 38285529  T
Q  470 aatgtaccaaccc-nnnnnnnnnactaaatttagcaaccaacttgtaactactccatctgttataaattataggcaaatttaactttttagattcattca 568  Q
    |||||||||||||          |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||||||    
T  38285528 aatgtaccaacccatttttttttactaaatttagcaaccaacttgtaactactccatctgttataaattatgggcaaatttaacatttta-attcattca 38285430  T
Q  569 aatataaaccacatatatcattaattgaatgaatttaaatt 609  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  38285429 aatataaaccacatatattattaattgaatgaatttaaatt 38285389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 18 - 316
Target Start/End: Complemental strand, 38286026 - 38285729
Alignment:
Q  18 aatttcactataaaaaatatcaaaagtcacattgaaataatctcagatactatgcaatcaattatgaacctggtaagagattaaagtatgaaacacacaa 117  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||    
T  38286026 aatttcactataaaaaatatcaaaagtcacattcaaataatctcagatactatacaattaattatgaacctggtaagagattaaagtatgaaacacacaa 38285927  T
Q  118 caacaaaaatcaaagaagaaaacaaattggccttca---ctagaaaacgctatcacactcctatcatttcacactcttcnnnnnnnnnnnnnnnnnnnnn 214  Q
    ||||||||||||||||||||||||||||||||||||   ||||||||| |||||||||||||||||  |||||||| ||                         
T  38285926 caacaaaaatcaaagaagaaaacaaattggccttcactgctagaaaacactatcacactcctatca--tcacactcctctctttttttataatttttttt 38285829  T
Q  215 aataccatataatagcactttctataaaaagggctaatataggtgtcacgttataatagcacgcgtaacggaaataaatattattaatattagagtcaat 314  Q
    |||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||| |||||||||||   |||||||||||||| |||||||    
T  38285828 aataccatataatagcactttctataaaaa-gactaatatagatgtcacgttataatagcacgggtaacggaaat-gctattattaatattatagtcaat 38285731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 215 - 316
Target Start/End: Original strand, 4840866 - 4840965
Alignment:
Q  215 aataccatataatagcactttctataaaaagggctaatataggtgtcacgttataatagcacgcgtaacggaaataaatattattaatattagagtcaat 314  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |   ||||||||||||||||||||||    
T  4840866 aataccatataatagcactttctataaaa-gggctaatataggtgtcacgttataatagcatgcgtaacggaagt-gctattattaatattagagtcaat 4840963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 312 - 347
Target Start/End: Complemental strand, 38285683 - 38285648
Alignment:
Q  312 aatctcaaaattggcgtagtgtactttaccaaataa 347  Q
    |||||||||||||||||||| |||||||||||||||    
T  38285683 aatctcaaaattggcgtagtatactttaccaaataa 38285648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 571 - 601
Target Start/End: Original strand, 8126201 - 8126231
Alignment:
Q  571 tataaaccacatatatcattaattgaatgaa 601  Q
    |||||||||||||||||||||||||||||||    
T  8126201 tataaaccacatatatcattaattgaatgaa 8126231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 554 - 607
Target Start/End: Complemental strand, 20625325 - 20625272
Alignment:
Q  554 ttttagattcattcaaatataaaccacatatatcattaattgaatgaatttaaa 607  Q
    |||||| ||||||||| ||||||||||||| |||||| | | ||||||||||||    
T  20625325 ttttaggttcattcaattataaaccacatacatcatttaataaatgaatttaaa 20625272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 575 - 607
Target Start/End: Original strand, 14626703 - 14626735
Alignment:
Q  575 aaccacatatatcattaattgaatgaatttaaa 607  Q
    ||||||||| |||||||||||||||||||||||    
T  14626703 aaccacatacatcattaattgaatgaatttaaa 14626735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 569 - 601
Target Start/End: Original strand, 21659207 - 21659239
Alignment:
Q  569 aatataaaccacatatatcattaattgaatgaa 601  Q
    |||||| ||||||||||||||||||||||||||    
T  21659207 aatatagaccacatatatcattaattgaatgaa 21659239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 130; Significance: 5e-67; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 18 - 147
Target Start/End: Complemental strand, 28159724 - 28159595
Alignment:
Q  18 aatttcactataaaaaatatcaaaagtcacattgaaataatctcagatactatgcaatcaattatgaacctggtaagagattaaagtatgaaacacacaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28159724 aatttcactataaaaaatatcaaaagtcacattgaaataatctcagatactatgcaatcaattatgaacctggtaagagattaaagtatgaaacacacaa 28159625  T
Q  118 caacaaaaatcaaagaagaaaacaaattgg 147  Q
    ||||||||||||||||||||||||||||||    
T  28159624 caacaaaaatcaaagaagaaaacaaattgg 28159595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 215 - 316
Target Start/End: Complemental strand, 28157057 - 28156958
Alignment:
Q  215 aataccatataatagcactttctataaaaagggctaatataggtgtcacgttataatagcacgcgtaacggaaataaatattattaatattagagtcaat 314  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||   |||||||||||||| |||||||    
T  28157057 aataccatataatagcactttctataaaa-gggctaatataggtgtcacgttataatagcatgcgtaacggaaat-gctattattaatattatagtcaat 28156960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 544 - 601
Target Start/End: Complemental strand, 10150965 - 10150908
Alignment:
Q  544 aaatttaactttttagattcattcaaatataaaccacatatatcattaattgaatgaa 601  Q
    |||||| ||||||||| ||||||||| ||| ||||||||| |||||||||||||||||    
T  10150965 aaatttgactttttaggttcattcaattatgaaccacatacatcattaattgaatgaa 10150908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 569 - 606
Target Start/End: Original strand, 13832077 - 13832114
Alignment:
Q  569 aatataaaccacatatatcattaattgaatgaatttaa 606  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  13832077 aatatgaaccacatatatcattaattgaatgaatttaa 13832114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 569 - 602
Target Start/End: Original strand, 44838843 - 44838876
Alignment:
Q  569 aatataaaccacatatatcattaattgaatgaat 602  Q
    ||||| ||||||||||||||||||||||||||||    
T  44838843 aatatgaaccacatatatcattaattgaatgaat 44838876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 571 - 607
Target Start/End: Complemental strand, 42631848 - 42631812
Alignment:
Q  571 tataaaccacatatatcattaattgaatgaatttaaa 607  Q
    ||||||||||||| |||||||||||||||||| ||||    
T  42631848 tataaaccacatacatcattaattgaatgaatctaaa 42631812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 122; Significance: 3e-62; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 18 - 147
Target Start/End: Original strand, 14358665 - 14358794
Alignment:
Q  18 aatttcactataaaaaatatcaaaagtcacattgaaataatctcagatactatgcaatcaattatgaacctggtaagagattaaagtatgaaacacacaa 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  14358665 aatttcactataaaaaatatcaaaagtcacattgaaataatctcagataacatgcaatcaattatgaacctggtaagagattaaagtatgaaacacacaa 14358764  T
Q  118 caacaaaaatcaaagaagaaaacaaattgg 147  Q
    ||||||||||||||||||||||||||||||    
T  14358765 caacaaaaatcaaagaagaaaacaaattgg 14358794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 215 - 316
Target Start/End: Original strand, 13070101 - 13070200
Alignment:
Q  215 aataccatataatagcactttctataaaaagggctaatataggtgtcacgttataatagcacgcgtaacggaaataaatattattaatattagagtcaat 314  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||||||   ||||||||||||||||||||||    
T  13070101 aataccatataatagcactttctataaaa-gggctaatataggtgtcacgttataatagcttgcgtaacggaaat-gctattattaatattagagtcaat 13070198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 215 - 316
Target Start/End: Original strand, 14361258 - 14361357
Alignment:
Q  215 aataccatataatagcactttctataaaaagggctaatataggtgtcacgttataatagcacgcgtaacggaaataaatattattaatattagagtcaat 314  Q
    |||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||||   ||||||||||||||||||||||    
T  14361258 aataccatataacagcactttgtataaaa-gggctaatataggtgtcacgttataatagcatgcgtaacggaaat-gctattattaatattagagtcaat 14361355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 181
Target Start/End: Original strand, 14361196 - 14361227
Alignment:
Q  150 ttcactagaaaacgctatcacactcctatcat 181  Q
    ||||||||||||||||||||||||||||||||    
T  14361196 ttcactagaaaacgctatcacactcctatcat 14361227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 569 - 607
Target Start/End: Complemental strand, 28737898 - 28737860
Alignment:
Q  569 aatataaaccacatatatcattaattgaatgaatttaaa 607  Q
    ||||| ||||||||| |||||||||||||||||||||||    
T  28737898 aatatgaaccacatacatcattaattgaatgaatttaaa 28737860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 534 - 607
Target Start/End: Original strand, 37381088 - 37381158
Alignment:
Q  534 aattataggcaaatttaactttttagattcattcaaatataaaccacatatatcattaattgaatgaatttaaa 607  Q
    ||||||| |||||||| |||||||||||||||   ||||||||||||||||||||||||||||| |||| ||||    
T  37381088 aattataagcaaattttactttttagattcat---aatataaaccacatatatcattaattgaacgaatctaaa 37381158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 518 - 569
Target Start/End: Original strand, 53019132 - 53019183
Alignment:
Q  518 tactccatctgttataaattataggcaaatttaactttttagattcattcaa 569  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||||| ||||    
T  53019132 tactccatctgttattaattataagcaaatttaactttttagattcactcaa 53019183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 534 - 607
Target Start/End: Complemental strand, 38938146 - 38938074
Alignment:
Q  534 aattataggcaaatttaactttttagattcattcaaatataaaccacatatatcattaattgaatgaatttaaa 607  Q
    ||||||| |||||||| |||||| |||||||||||| ||| ||||||||| || ||||||||||||||| ||||    
T  38938146 aattataagcaaatttgactttt-agattcattcaattatgaaccacatacattattaattgaatgaatctaaa 38938074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 569 - 601
Target Start/End: Original strand, 16450228 - 16450260
Alignment:
Q  569 aatataaaccacatatatcattaattgaatgaa 601  Q
    |||||||||||||||||||||||||||||||||    
T  16450228 aatataaaccacatatatcattaattgaatgaa 16450260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 518 - 569
Target Start/End: Original strand, 30051339 - 30051390
Alignment:
Q  518 tactccatctgttataaattataggcaaatttaactttttagattcattcaa 569  Q
    ||||||||| ||| |||| |||| |||||||||||||||||| |||||||||    
T  30051339 tactccatccgttttaaaatataagcaaatttaactttttaggttcattcaa 30051390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 518 - 569
Target Start/End: Complemental strand, 55131680 - 55131629
Alignment:
Q  518 tactccatctgttataaattataggcaaatttaactttttagattcattcaa 569  Q
    ||||||||| ||| | ||||||| |||||||||||||||||| |||||||||    
T  55131680 tactccatccgttgttaattataagcaaatttaactttttaggttcattcaa 55131629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 569 - 607
Target Start/End: Original strand, 33084786 - 33084824
Alignment:
Q  569 aatataaaccacatatatcattaattgaatgaatttaaa 607  Q
    ||||| ||||| |||||||||||||||||||||||||||    
T  33084786 aatatgaaccagatatatcattaattgaatgaatttaaa 33084824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 569 - 607
Target Start/End: Complemental strand, 42013217 - 42013179
Alignment:
Q  569 aatataaaccacatatatcattaattgaatgaatttaaa 607  Q
    |||||| |||||||| |||||||||||||||||||||||    
T  42013217 aatatagaccacatacatcattaattgaatgaatttaaa 42013179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 574 - 608
Target Start/End: Complemental strand, 50459416 - 50459382
Alignment:
Q  574 aaaccacatatatcattaattgaatgaatttaaat 608  Q
    ||||||||||||||||||||| |||||||||||||    
T  50459416 aaaccacatatatcattaattaaatgaatttaaat 50459382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 569 - 602
Target Start/End: Complemental strand, 49573950 - 49573917
Alignment:
Q  569 aatataaaccacatatatcattaattgaatgaat 602  Q
    ||||||||||||||| ||||||||||||||||||    
T  49573950 aatataaaccacatacatcattaattgaatgaat 49573917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 570 - 602
Target Start/End: Complemental strand, 11796655 - 11796623
Alignment:
Q  570 atataaaccacatatatcattaattgaatgaat 602  Q
    ||||||||||||||||||||| |||||||||||    
T  11796655 atataaaccacatatatcattcattgaatgaat 11796623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 575 - 607
Target Start/End: Original strand, 17659540 - 17659572
Alignment:
Q  575 aaccacatatatcattaattgaatgaatttaaa 607  Q
    |||||||||||||||||||||||||||| ||||    
T  17659540 aaccacatatatcattaattgaatgaatctaaa 17659572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 571 - 607
Target Start/End: Original strand, 24275288 - 24275324
Alignment:
Q  571 tataaaccacatatatcattaattgaatgaatttaaa 607  Q
    |||| |||||||| |||||||||||||||||||||||    
T  24275288 tatagaccacatacatcattaattgaatgaatttaaa 24275324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 569 - 601
Target Start/End: Original strand, 30162680 - 30162712
Alignment:
Q  569 aatataaaccacatatatcattaattgaatgaa 601  Q
    ||||| |||||||||||||||||||||||||||    
T  30162680 aatatgaaccacatatatcattaattgaatgaa 30162712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 569 - 601
Target Start/End: Complemental strand, 53403062 - 53403030
Alignment:
Q  569 aatataaaccacatatatcattaattgaatgaa 601  Q
    ||||||||||||||| |||||||||||||||||    
T  53403062 aatataaaccacatacatcattaattgaatgaa 53403030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 569 - 601
Target Start/End: Complemental strand, 55501273 - 55501241
Alignment:
Q  569 aatataaaccacatatatcattaattgaatgaa 601  Q
    ||||||||||||||| |||||||||||||||||    
T  55501273 aatataaaccacatacatcattaattgaatgaa 55501241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 517 - 607
Target Start/End: Complemental strand, 33784183 - 33784093
Alignment:
Q  517 ctactccatctgttataaattataggcaaatttaactttttagattcattcaaatataaaccacatatatcattaattgaatgaatttaaa 607  Q
    ||||||||||||||  ||| |||| |||||||| ||||||||  ||| ||||| |||  |||||||| |||||||||||||||||||||||    
T  33784183 ctactccatctgtttcaaaatataagcaaattttactttttaagttcgttcaattatggaccacatacatcattaattgaatgaatttaaa 33784093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 569 - 607
Target Start/End: Complemental strand, 46578336 - 46578298
Alignment:
Q  569 aatataaaccacatatatcattaattgaatgaatttaaa 607  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  46578336 aatataaaccacatacatcattaattgaatgaatttaaa 46578298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 571 - 607
Target Start/End: Original strand, 5691547 - 5691583
Alignment:
Q  571 tataaaccacatatatcattaattgaatgaatttaaa 607  Q
    ||||||||||||| |||||||||||||||||||||||    
T  5691547 tataaaccacatacatcattaattgaatgaatttaaa 5691583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 569 - 607
Target Start/End: Complemental strand, 24166334 - 24166296
Alignment:
Q  569 aatataaaccacatatatcattaattgaatgaatttaaa 607  Q
    ||||| ||||||||||||||||||||||||||| |||||    
T  24166334 aatatgaaccacatatatcattaattgaatgaacttaaa 24166296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 569 - 607
Target Start/End: Original strand, 39960307 - 39960345
Alignment:
Q  569 aatataaaccacatatatcattaattgaatgaatttaaa 607  Q
    |||| |||| |||||||||||||||||||||||||||||    
T  39960307 aataaaaactacatatatcattaattgaatgaatttaaa 39960345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 518 - 571
Target Start/End: Complemental strand, 35481931 - 35481878
Alignment:
Q  518 tactccatctgttataaattataggcaaatttaactttttagattcattcaaat 571  Q
    |||||||||| | |||||||||| |||||||| | |||||||||||||| ||||    
T  35481931 tactccatctatcataaattataagcaaatttgattttttagattcatttaaat 35481878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 571 - 607
Target Start/End: Complemental strand, 3498363 - 3498327
Alignment:
Q  571 tataaaccacatatatcattaattgaatgaatttaaa 607  Q
    ||||||||||||| |||||||||||||||||| ||||    
T  3498363 tataaaccacatacatcattaattgaatgaatctaaa 3498327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 534 - 566
Target Start/End: Complemental strand, 9504024 - 9503992
Alignment:
Q  534 aattataggcaaatttaactttttagattcatt 566  Q
    ||||||| |||||||||||||||||||||||||    
T  9504024 aattataagcaaatttaactttttagattcatt 9503992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 569 - 597
Target Start/End: Original strand, 24733184 - 24733212
Alignment:
Q  569 aatataaaccacatatatcattaattgaa 597  Q
    |||||||||||||||||||||||||||||    
T  24733184 aatataaaccacatatatcattaattgaa 24733212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 569 - 601
Target Start/End: Original strand, 27234927 - 27234959
Alignment:
Q  569 aatataaaccacatatatcattaattgaatgaa 601  Q
    ||||| |||||||||||||||||||||||||||    
T  27234927 aatatgaaccacatatatcattaattgaatgaa 27234959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 571 - 607
Target Start/End: Original strand, 27942396 - 27942432
Alignment:
Q  571 tataaaccacatatatcattaattgaatgaatttaaa 607  Q
    ||||||||||||| ||||||||||||||||| |||||    
T  27942396 tataaaccacatacatcattaattgaatgaacttaaa 27942432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 571 - 607
Target Start/End: Complemental strand, 46221147 - 46221111
Alignment:
Q  571 tataaaccacatatatcattaattgaatgaatttaaa 607  Q
    ||||||||||||| ||||||||||||||||| |||||    
T  46221147 tataaaccacatacatcattaattgaatgaacttaaa 46221111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 537 - 607
Target Start/End: Original strand, 31211750 - 31211820
Alignment:
Q  537 tataggcaaatttaactttttagattcattcaaatataaaccacatatatcattaattgaatgaatttaaa 607  Q
    |||| |||||||| ||||||||||||||||||| ||| ||||||||| ||||||||| |||||||| ||||    
T  31211750 tataagcaaattttactttttagattcattcaattatgaaccacatacatcattaatggaatgaatctaaa 31211820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 569 - 607
Target Start/End: Original strand, 4637076 - 4637114
Alignment:
Q  569 aatataaaccacatatatcattaattgaatgaatttaaa 607  Q
    ||||||||||||||| |||||||||||||||||| ||||    
T  4637076 aatataaaccacatacatcattaattgaatgaatctaaa 4637114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 570 - 607
Target Start/End: Complemental strand, 19822448 - 19822411
Alignment:
Q  570 atataaaccacatatatcattaattgaatgaatttaaa 607  Q
    ||||||||||||||||||||| |||||||||| |||||    
T  19822448 atataaaccacatatatcattgattgaatgaacttaaa 19822411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 570 - 607
Target Start/End: Complemental strand, 19842669 - 19842632
Alignment:
Q  570 atataaaccacatatatcattaattgaatgaatttaaa 607  Q
    ||||||||||||||||||||| |||||||||| |||||    
T  19842669 atataaaccacatatatcattgattgaatgaacttaaa 19842632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 569 - 601
Target Start/End: Original strand, 10099621 - 10099653
Alignment:
Q  569 aatataaaccacatatatcattaattgaatgaa 601  Q
    |||||| ||||||||||||||||||||||||||    
T  10099621 aatatagaccacatatatcattaattgaatgaa 10099653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 571 - 607
Target Start/End: Original strand, 27743687 - 27743723
Alignment:
Q  571 tataaaccacatatatcattaattgaatgaatttaaa 607  Q
    ||||||||||||| |||||||||||||||||| ||||    
T  27743687 tataaaccacatacatcattaattgaatgaatctaaa 27743723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 571 - 607
Target Start/End: Complemental strand, 29712556 - 29712520
Alignment:
Q  571 tataaaccacatatatcattaattgaatgaatttaaa 607  Q
    ||||||||||||| ||||||||||||||||| |||||    
T  29712556 tataaaccacatacatcattaattgaatgaacttaaa 29712520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 571 - 607
Target Start/End: Original strand, 30905195 - 30905231
Alignment:
Q  571 tataaaccacatatatcattaattgaatgaatttaaa 607  Q
    ||||||||||||| ||||||||||||||||| |||||    
T  30905195 tataaaccacatacatcattaattgaatgaacttaaa 30905231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 571 - 607
Target Start/End: Complemental strand, 38179063 - 38179027
Alignment:
Q  571 tataaaccacatatatcattaattgaatgaatttaaa 607  Q
    |||||||||||||||||||| | ||||||||||||||    
T  38179063 tataaaccacatatatcatttagtgaatgaatttaaa 38179027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000004; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 518 - 567
Target Start/End: Complemental strand, 47293417 - 47293368
Alignment:
Q  518 tactccatctgttataaattataggcaaatttaactttttagattcattc 567  Q
    ||||||||||||| | ||||||| ||||||||||||||||||||||||||    
T  47293417 tactccatctgttgtcaattataagcaaatttaactttttagattcattc 47293368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 518 - 559
Target Start/End: Complemental strand, 47991921 - 47991880
Alignment:
Q  518 tactccatctgttataaattataggcaaatttaactttttag 559  Q
    ||||||||||||||| ||||||| ||||||||||||||||||    
T  47991921 tactccatctgttatgaattataagcaaatttaactttttag 47991880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 571 - 607
Target Start/End: Original strand, 15055026 - 15055062
Alignment:
Q  571 tataaaccacatatatcattaattgaatgaatttaaa 607  Q
    |||||||||||||||||||||||||||||||| ||||    
T  15055026 tataaaccacatatatcattaattgaatgaatctaaa 15055062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 543 - 598
Target Start/End: Original strand, 33324088 - 33324143
Alignment:
Q  543 caaatttaactttttagattcattcaaatataaaccacatatatcattaattgaat 598  Q
    ||||||| ||||||||| ||||||||| ||| ||||||||| || |||||||||||    
T  33324088 caaatttcactttttaggttcattcaattatgaaccacatacattattaattgaat 33324143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 553 - 607
Target Start/End: Complemental strand, 34333035 - 34332981
Alignment:
Q  553 tttttagattcattcaaatataaaccacatatatcattaattgaatgaatttaaa 607  Q
    ||||||| || ||| |||||| ||||||||| ||||||||||||||||| |||||    
T  34333035 tttttaggttaatttaaatatgaaccacatacatcattaattgaatgaacttaaa 34332981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 570 - 607
Target Start/End: Original strand, 36164027 - 36164064
Alignment:
Q  570 atataaaccacatatatcattaattgaatgaatttaaa 607  Q
    ||||| ||||||||||||||| ||||||||||||||||    
T  36164027 atatataccacatatatcatttattgaatgaatttaaa 36164064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 569 - 601
Target Start/End: Complemental strand, 21852508 - 21852476
Alignment:
Q  569 aatataaaccacatatatcattaattgaatgaa 601  Q
    ||||| |||||||||||||||||||||||||||    
T  21852508 aatatgaaccacatatatcattaattgaatgaa 21852476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 569 - 601
Target Start/End: Complemental strand, 24478736 - 24478704
Alignment:
Q  569 aatataaaccacatatatcattaattgaatgaa 601  Q
    |||||| ||||||||||||||||||||||||||    
T  24478736 aatatagaccacatatatcattaattgaatgaa 24478704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 569 - 601
Target Start/End: Complemental strand, 31481936 - 31481904
Alignment:
Q  569 aatataaaccacatatatcattaattgaatgaa 601  Q
    |||||||||||||||||||||||| ||||||||    
T  31481936 aatataaaccacatatatcattaaatgaatgaa 31481904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 569 - 607
Target Start/End: Original strand, 30489165 - 30489203
Alignment:
Q  569 aatataaaccacatatatcattaattgaatgaatttaaa 607  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  30489165 aatatagaccacatatatcattaattgaatgaatttaaa 30489203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 511 - 569
Target Start/End: Complemental strand, 22584383 - 22584325
Alignment:
Q  511 ttgtaactactccatctgttataaattataggcaaatttaactttttagattcattcaa 569  Q
    |||||| ||||||||||||| | || |||| |||||||| ||||||||| |||||||||    
T  22584383 ttgtaaatactccatctgtttttaaatataagcaaattttactttttaggttcattcaa 22584325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 534 - 567
Target Start/End: Complemental strand, 25596542 - 25596509
Alignment:
Q  534 aattataggcaaatttaactttttagattcattc 567  Q
    ||||||| ||||||||||||||||||||||||||    
T  25596542 aattataagcaaatttaactttttagattcattc 25596509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 569 - 601
Target Start/End: Complemental strand, 15966714 - 15966682
Alignment:
Q  569 aatataaaccacatatatcattaattgaatgaa 601  Q
    ||||||||||||||| |||||||||||||||||    
T  15966714 aatataaaccacatacatcattaattgaatgaa 15966682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 569 - 601
Target Start/End: Complemental strand, 36329151 - 36329119
Alignment:
Q  569 aatataaaccacatatatcattaattgaatgaa 601  Q
    ||||| |||||||||||||||||||||||||||    
T  36329151 aatatgaaccacatatatcattaattgaatgaa 36329119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 571 - 607
Target Start/End: Original strand, 36346866 - 36346902
Alignment:
Q  571 tataaaccacatatatcattaattgaatgaatttaaa 607  Q
    ||||||||||||| ||||||||||||||||| |||||    
T  36346866 tataaaccacatacatcattaattgaatgaacttaaa 36346902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 571 - 607
Target Start/End: Original strand, 40208548 - 40208584
Alignment:
Q  571 tataaaccacatatatcattaattgaatgaatttaaa 607  Q
    |||||||||||||||||||||||||||| || |||||    
T  40208548 tataaaccacatatatcattaattgaataaacttaaa 40208584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0531 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0531
Description:

Target: scaffold0531; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 518 - 569
Target Start/End: Original strand, 7002 - 7053
Alignment:
Q  518 tactccatctgttataaattataggcaaatttaactttttagattcattcaa 569  Q
    ||||||||| ||||  ||||||| |||||||| |||||||||||||||||||    
T  7002 tactccatccgttactaattataagcaaatttgactttttagattcattcaa 7053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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