View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4193_low_32 (Length: 315)
Name: NF4193_low_32
Description: NF4193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4193_low_32 |
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Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 16 - 304
Target Start/End: Complemental strand, 49537440 - 49537156
Alignment:
| Q |
16 |
aattacttgggttagactttgtctaaaatttgcaacaaaattagtgactgtgcgagcgtgtattccaattgatttagctgcagcagaatcagaccccaca |
115 |
Q |
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| T |
49537440 |
aattacttgggttagactttgtctaaaatttgcaacaaaattagtgactgtgcg----tgtattccaattgatttagctgcagcagaatcagaccccaca |
49537345 |
T |
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| Q |
116 |
tttccatatccgaccggcttaattagcatcattcacatgtcacattgaacaagacatgtaccagtcacaacattataatatactactattagtatatatt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49537344 |
tttccatatccgaccggcttaattagcatcattcacatgtcacattgaacaagacatgtaccagtcacaacattataatatactactattagtatatatt |
49537245 |
T |
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| Q |
216 |
ttttataccaagcgtattgcgtgtaattaaggagattaatctatcgataattgaaatttaagatgttgacatctcctaacatatttctt |
304 |
Q |
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||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49537244 |
ttttataccaagcgtattgcgtgtaattagggagattaatttatcgataattgaaatttaagatgttgacatctcctaacatatttctt |
49537156 |
T |
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