View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4193_low_38 (Length: 288)
Name: NF4193_low_38
Description: NF4193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4193_low_38 |
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Alignment Details
Target: chr7 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 19 - 276
Target Start/End: Original strand, 41876123 - 41876380
Alignment:
| Q |
19 |
accatatccttggagcttttggaacaagcccctctgattgatactcttgtagtacctataagtggtttgttctcatttttattttaatccatcaaccaaa |
118 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
41876123 |
accatatccttggagcttttggaacaagcccctcagattgatactcttgtagtacctataagtggtttgttctcatttttatgttaatccatcaaccaaa |
41876222 |
T |
|
| Q |
119 |
tgttttaaaattttcataaattttagtatcctcttctcgattttccaacaaaatgaaaattgtaggcggtggtatggcatcgggagtagcattagctgcc |
218 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41876223 |
tgttttaaaattttcataaattttagtattctcttctcgattttccaacaaaatgaaaattgtaggcggtggtatggcatcgggagtagcattagctgcc |
41876322 |
T |
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| Q |
219 |
aaggccattaacccgtctattcggattttggctgctgagccaaaaggagttgatgatg |
276 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
41876323 |
aaggccattaacccgtctattcggattttggctgctgagccaaaaggagctgatgatg |
41876380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 19 - 276
Target Start/End: Complemental strand, 24817726 - 24817467
Alignment:
| Q |
19 |
accatatccttggagcttttggaacaagcccctctgattgatactcttgtagtacctataagtggtttgttctca--tttttattttaatccatcaacca |
116 |
Q |
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||||||||||||||| || | |||||| ||||| || ||||| ||||||||||| ||||||||||||||||| |||||| | ||||||||| | | |
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| T |
24817726 |
accatatccttggagtttcttgaacaaatccctcaaatcgatacacttgtagtaccaataagtggtttgttctctcttttttacgtcaatccatcatcaa |
24817627 |
T |
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| Q |
117 |
aatgttttaaaattttcataaattttagtatcctcttctcgattttccaacaaaatgaaaattgtaggcggtggtatggcatcgggagtagcattagctg |
216 |
Q |
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| T |
24817626 |
aatgtttcacaatttgcatataatttagtatcctcttatcgattttgttacaaaatgatacttgcaggcggcggtatgatagcaggaatagcaatagctg |
24817527 |
T |
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| Q |
217 |
ccaaggccattaacccgtctattcggattttggctgctgagccaaaaggagttgatgatg |
276 |
Q |
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||||||| ||||| ||| ||||||| ||||||||||||||||| ||||||| |||||||| |
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| T |
24817526 |
ccaaggcgattaatccggctattcgtattttggctgctgagcctaaaggagctgatgatg |
24817467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 19 - 276
Target Start/End: Complemental strand, 24800650 - 24800391
Alignment:
| Q |
19 |
accatatccttggagcttttggaacaagcccctctgattgatactcttgtagtacctataagtggtttgttctca--tttttattttaatccatcaacca |
116 |
Q |
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||||||||||||||| || | |||||| ||||| || ||||| ||||||||||| ||||||||||||||||| |||||| | ||||||||| | | |
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| T |
24800650 |
accatatccttggagtttcttgaacaaatccctcaaatcgatacacttgtagtaccaataagtggtttgttctctcttttttacgtcaatccatcatcaa |
24800551 |
T |
|
| Q |
117 |
aatgttttaaaattttcataaattttagtatcctcttctcgattttccaacaaaatgaaaattgtaggcggtggtatggcatcgggagtagcattagctg |
216 |
Q |
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||||||| | ||||| |||| | |||||||||||||| |||||||| ||||||||| | ||| ||| || |||||| | | ||| ||||| |||||| |
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| T |
24800550 |
aatgtttcacaatttgcatataatttagtatcctcttatcgattttgttacaaaatgatacttgcaggtggcggtatgatagcaggaatagcaatagctg |
24800451 |
T |
|
| Q |
217 |
ccaaggccattaacccgtctattcggattttggctgctgagccaaaaggagttgatgatg |
276 |
Q |
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||||||| ||||| ||| ||||||| ||||||||||||||||| ||||||| |||||||| |
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| T |
24800450 |
ccaaggcgattaatccggctattcgtattttggctgctgagcctaaaggagctgatgatg |
24800391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 19 - 265
Target Start/End: Complemental strand, 40867943 - 40867697
Alignment:
| Q |
19 |
accatatccttggagcttttggaacaagcccctctgattgatactcttgtagtacctataagtggtttgttctcatttttattttaatccatcaacc-aa |
117 |
Q |
| |
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|||||||||||||||||| ||||||||||||||| | ||||| ||||| ||||| |||||||||||||| | |||| || | || |||||| || || |
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| T |
40867943 |
accatatccttggagcttctggaacaagcccctcaactagatacacttgtggtaccaataagtggtttgtttgctttttgatgtcaaaccatcatccaaa |
40867844 |
T |
|
| Q |
118 |
atgttttaaaattttcataaattttagtatcctcttctcgattttccaacaaaatgaaaattgtaggcggtggtatggcatcgggagtagcattagctgc |
217 |
Q |
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|||||| ||||||| ||| ||||| |||||| ||||| ||||||||||| ||||||||| || ||| |||||| || ||| ||||||||||| ||||| |
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| T |
40867843 |
atgtttcaaaatttgcattgattttggtatccccttcttgattttccaac-aaatgaaaactgcaggaggtggtttgatatcaggagtagcattggctgc |
40867745 |
T |
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| Q |
218 |
caaggccattaacccgtctattcggattttggctgctgagccaaaagg |
265 |
Q |
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| T |
40867744 |
caagtctatcaacccggccattcgtattttggctgctgaacctaaagg |
40867697 |
T |
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