View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4193_low_4 (Length: 600)
Name: NF4193_low_4
Description: NF4193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4193_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 484; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 16 - 587
Target Start/End: Complemental strand, 43395606 - 43395037
Alignment:
| Q |
16 |
aaaaagacccgtacattcgcaaaataaaataatgatattagaggttaatatctagattctaatatgtatttcgaccagattctttatgcatgaaactaaa |
115 |
Q |
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| T |
43395606 |
aaaaagacccttacattcgcaaaataa-----tgatattagaggttaatatctagattctaatatgtatttcgaccagattctttatgcatgaaactaaa |
43395512 |
T |
|
| Q |
116 |
catttactaataattaaattttatttccttttgttttgatgaagtttatgttccttatgtagta------tgaaataaattaaaatgttaccttctggcg |
209 |
Q |
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|||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
43395511 |
catttactaataattaaattttattttcttatgttttgatgaagtttatgttccttatgtagtagtagtatgaaataaattaaaatgttaccttctggcg |
43395412 |
T |
|
| Q |
210 |
gacctagtcctagaaagagcatctgttcgatcagaagatggaagggaagacttcgacggggatgcaaagcgaggtgaacctaatagccgtccgggagatt |
309 |
Q |
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| T |
43395411 |
gacctagtcctagaaagagcatctgttcgatcagaagatggaagggaagacttcgacggggatgcaaagcgaggtgaacctaatagccgtccgggagatt |
43395312 |
T |
|
| Q |
310 |
gatcacaacgtgaaggagaagaagcaacgacgagtcttgcttcttgcaaccattcttgtgttaaccttgcactgttacttctagtactatcatcgaaacc |
409 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43395311 |
---cacaacgtgaaggagaagaagcaacgacgagtcttgcttcttgcaaccattcttgtgttaaccttgcactgttacttctagtactatcatcgaaacc |
43395215 |
T |
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| Q |
410 |
atcatcttcctcatcatcatccatgttcataccaaccccaccagtgaggtcataggttttctggtgagtgtccactgtcccaaaaaacatgtcattcatg |
509 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
43395214 |
atcatcttcctcatcatcatccatgttcataccaaccccaccagtgaggtcataggttttctggtgagtgtctactgtcccaaaaaacatgtcattcatg |
43395115 |
T |
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| Q |
510 |
aaatctgttaggtcaggtggtggttcttccctacgtagtgtctctgccatcnnnnnnngtaggtttagtgaccctttg |
587 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
43395114 |
aaatctgttaggtcaggtggtggttcttccctacgtagtgtctctgccatctttttttgtaggtttagtgaccctttg |
43395037 |
T |
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