View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4193_low_40 (Length: 282)
Name: NF4193_low_40
Description: NF4193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4193_low_40 |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 14 - 266
Target Start/End: Complemental strand, 7587273 - 7587020
Alignment:
| Q |
14 |
cacagaagaataatagtgaaatcagaacccccaagtactcttt-agtcttaaaatattcagggtaaatatagtgtatactttagtaattttaattgaaca |
112 |
Q |
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| T |
7587273 |
cacagaagaataatagtgaaatcagaacccccaagtacttttttagtcttaaaatattcaggctaaatatagtgtatactatagtaattttaattgaacg |
7587174 |
T |
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| Q |
113 |
gatgatattcaatacatatcgagcaatagatccaaatcaatcttttgggtggagggctatagttgttctgaagaagaataaaacttaggtcatgtttctc |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7587173 |
gatgatattcaatacatatcgagcaatagatccaaatcaatcttttgggtggagggctatagttgttctgaagaagaataaaacttaggtcatgtttctc |
7587074 |
T |
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| Q |
213 |
acaaaaaagatacaaaggaacctaacaaacttgacctaaacaatttgacaaagc |
266 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7587073 |
acaaaaaagatacaaaggaacctaacaaacttgacctaaacaatttgacaaagc |
7587020 |
T |
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