View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4193_low_42 (Length: 276)
Name: NF4193_low_42
Description: NF4193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4193_low_42 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 66 - 276
Target Start/End: Complemental strand, 29829550 - 29829340
Alignment:
| Q |
66 |
actatttttctcttttacaaggaaggatcagtgaattgaatatcctccaagctacttttgtgattgagtacattgattccgctttttatacgaattgatt |
165 |
Q |
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| T |
29829550 |
actatttttctcttttacaaggaaggatcagtgaattgaatatcctccaagctacttttgtgattgagtacattgattccgctttttatacgaattgatt |
29829451 |
T |
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| Q |
166 |
ttatctttgaacctgcatacctaacctctgcatggagccattcattttttaaaacattcccatctttgtccagtatagatttgagactcttgtcatgcaa |
265 |
Q |
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| T |
29829450 |
tcatctttgaacctgcatacctaacctctgcatggagccattcattttttaaaacatttccatctttgtccagtatagatttgagactcttgtcatgcag |
29829351 |
T |
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| Q |
266 |
ttgcaaatcaa |
276 |
Q |
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||||||||||| |
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| T |
29829350 |
ttgcaaatcaa |
29829340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 66 - 276
Target Start/End: Original strand, 29841922 - 29842122
Alignment:
| Q |
66 |
actatttttctctttt-acaaggaaggatcagtgaattgaatatcctccaagctacttttgtgattgagtacattgattccgctttttatacgaattgat |
164 |
Q |
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|||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
29841922 |
actatttttctctttttacaaggaaggatcggtgaattgaatatcctccaagctacttttgtgattgagtacatggattccgctttttatacgaattgat |
29842021 |
T |
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| Q |
165 |
tttatctttgaacctgcatacctaacctctgcatggagccattca-ttttttaaaacattcccatctttgtccagtatagatttgagactcttgtcatgc |
263 |
Q |
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|| || |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
29842022 |
ttcat------------atacctaacctctgcatggagccattcatttttttaaaacatttccatctttgtccagtatagatttgagactcttgtcatgc |
29842109 |
T |
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| Q |
264 |
aattgcaaatcaa |
276 |
Q |
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| T |
29842110 |
agttgcaaatcaa |
29842122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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