View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4193_low_43 (Length: 274)

Name: NF4193_low_43
Description: NF4193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4193_low_43
NF4193_low_43
[»] chr4 (5 HSPs)
chr4 (4-258)||(13139985-13140254)
chr4 (1-67)||(10376144-10376210)
chr4 (184-218)||(21952507-21952541)
chr4 (184-218)||(42641737-42641771)
chr4 (184-221)||(51044563-51044600)
[»] chr7 (3 HSPs)
chr7 (1-65)||(11813462-11813526)
chr7 (1-69)||(34820713-34820781)
chr7 (184-218)||(46223176-46223210)
[»] chr5 (4 HSPs)
chr5 (1-69)||(30838251-30838319)
chr5 (1-60)||(14062730-14062789)
chr5 (184-245)||(13508437-13508498)
chr5 (184-245)||(21782673-21782734)
[»] chr8 (6 HSPs)
chr8 (3-60)||(21467500-21467557)
chr8 (1-67)||(23262826-23262892)
chr8 (1-69)||(13592874-13592942)
chr8 (1-41)||(26509551-26509591)
chr8 (13-69)||(26628995-26629051)
chr8 (13-65)||(45108605-45108657)
[»] chr2 (5 HSPs)
chr2 (1-58)||(31415112-31415169)
chr2 (1-70)||(18423649-18423717)
chr2 (13-66)||(13453844-13453897)
chr2 (21-66)||(22966923-22966968)
chr2 (20-60)||(34432392-34432432)
[»] chr6 (1 HSPs)
chr6 (13-67)||(31204698-31204752)
[»] chr1 (2 HSPs)
chr1 (13-58)||(35883504-35883549)
chr1 (2-55)||(49139640-49139693)


Alignment Details
Target: chr4 (Bit Score: 154; Significance: 9e-82; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 4 - 258
Target Start/End: Complemental strand, 13140254 - 13139985
Alignment:
Q  4 aaagaggagaaaagtagttgtcacaagagtcgtacaaaattggttgtacaaatatcaatcctctttatnnnnnnngcttatgacacatccataagctgtt 103  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||       |||||||||||||||||||||||||    
T  13140254 aaagaggagaaaagtagttgtcacaagagttgtacaaaattggttgtacaaatatcactcctctttatgaaaacagcttatgacacatccataagctgtt 13140155  T
Q  104 ttgaatctatttccacaggctcttcaatatagctt-------------ataacttatgtcaaaactcaaaacagtttaac--nnnnnnnngaatattttg 188  Q
    |||||||||||||||||||||||||||||||||||             ||||||||||||||||||||||||||||||||          |||||||||     
T  13140154 ttgaatctatttccacaggctcttcaatatagcttataaaaacagcttataacttatgtcaaaactcaaaacagtttaacttttttttttgaatattttt 13140055  T
Q  189 ttatggaaatagcttatgcataaacacttaactaagctattcatccaaacattgccataaaacaaagtac 258  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  13140054 ttatggaaatagcttatgcattaacacttaactaagctattcatccaaacattgccataaaacaaagtac 13139985  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 10376144 - 10376210
Alignment:
Q  1 taaaaagaggagaaaagtagttgtcacaagagtcgtacaaaattggttgtacaaatatcaatcctct 67  Q
    |||||||||||||||| | ||||| |||||| | ||| | |||||||||||||||||||| ||||||    
T  10376144 taaaaagaggagaaaaatggttgttacaagaattgtatacaattggttgtacaaatatcactcctct 10376210  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 218
Target Start/End: Complemental strand, 21952541 - 21952507
Alignment:
Q  184 ttttgttatggaaatagcttatgcataaacactta 218  Q
    ||||||||| |||||||||||||||||||||||||    
T  21952541 ttttgttatagaaatagcttatgcataaacactta 21952507  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 218
Target Start/End: Original strand, 42641737 - 42641771
Alignment:
Q  184 ttttgttatggaaatagcttatgcataaacactta 218  Q
    |||||||||||||||||||||| ||||||||||||    
T  42641737 ttttgttatggaaatagcttatacataaacactta 42641771  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 51044563 - 51044600
Alignment:
Q  184 ttttgttatggaaatagcttatgcataaacacttaact 221  Q
    ||||||||| |||||||||||| |||||||||||||||    
T  51044563 ttttgttatagaaatagcttatacataaacacttaact 51044600  T

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Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 11813462 - 11813526
Alignment:
Q  1 taaaaagaggagaaaagtagttgtcacaagagtcgtacaaaattggttgtacaaatatcaatcct 65  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| ||||    
T  11813462 taaaaagaggagaaaagtagttgtcacaagagttatacaaaattggttgtacaaatatcactcct 11813526  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 34820713 - 34820781
Alignment:
Q  1 taaaaagaggagaaaagtagttgtcacaagagtcgtacaaaattggttgtacaaatatcaatcctcttt 69  Q
    |||||| || |||||||||| |||||||||||| ||||||||||| |||| ||||||||| ||||||||    
T  34820713 taaaaaaagaagaaaagtagatgtcacaagagttgtacaaaattgattgtgcaaatatcactcctcttt 34820781  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 218
Target Start/End: Original strand, 46223176 - 46223210
Alignment:
Q  184 ttttgttatggaaatagcttatgcataaacactta 218  Q
    |||||||||||||||||||||| ||||||||||||    
T  46223176 ttttgttatggaaatagcttatacataaacactta 46223210  T

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Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 30838319 - 30838251
Alignment:
Q  1 taaaaagaggagaaaagtagttgtcacaagagtcgtacaaaattggttgtacaaatatcaatcctcttt 69  Q
    |||||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||| ||||||||    
T  30838319 taaaaagaggagaaaagtagttgtaacaagagttgtacaaaattggctgtacaaatatcactcctcttt 30838251  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 14062789 - 14062730
Alignment:
Q  1 taaaaagaggagaaaagtagttgtcacaagagtcgtacaaaattggttgtacaaatatca 60  Q
    ||||||| | |||||||||||||||| |||||| ||||||||||||||||| ||||||||    
T  14062789 taaaaagtgtagaaaagtagttgtcataagagttgtacaaaattggttgtataaatatca 14062730  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 184 - 245
Target Start/End: Complemental strand, 13508498 - 13508437
Alignment:
Q  184 ttttgttatggaaatagcttatgcataaacacttaactaagctattcatccaaacattgcca 245  Q
    ||||||||| |||||||||||  ||||||||||||| |||| | || |||||||||| ||||    
T  13508498 ttttgttatagaaatagcttaaacataaacacttaattaagttgtttatccaaacatggcca 13508437  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 184 - 245
Target Start/End: Original strand, 21782673 - 21782734
Alignment:
Q  184 ttttgttatggaaatagcttatgcataaacacttaactaagctattcatccaaacattgcca 245  Q
    ||||||||| |||||||||||  ||||||||||||| |||| | || |||||||||| ||||    
T  21782673 ttttgttatagaaatagcttaaacataaacacttaattaagttgtttatccaaacatggcca 21782734  T

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Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 21467500 - 21467557
Alignment:
Q  3 aaaagaggagaaaagtagttgtcacaagagtcgtacaaaattggttgtacaaatatca 60  Q
    |||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  21467500 aaaagatgagaaaaatagttgtcacaagagttgtacaaaattggttgtacaaatatca 21467557  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 23262826 - 23262892
Alignment:
Q  1 taaaaagaggagaaaagtagttgtcacaagagtcgtacaaaattggttgtacaaatatcaatcctct 67  Q
    |||||||||||||||| ||||| |||||| ||| ||||||||||||||||| |||||||| ||||||    
T  23262826 taaaaagaggagaaaaatagttatcacaaaagttgtacaaaattggttgtaaaaatatcactcctct 23262892  T

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Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 13592874 - 13592942
Alignment:
Q  1 taaaaagaggagaaaagtagttgtcacaagagtcgtacaaaattggttgtacaaatatcaatcctcttt 69  Q
    |||||||||||||||| || |||||||||||  |||||||||||  |||||||||||||| ||||||||    
T  13592874 taaaaagaggagaaaattaattgtcacaagaaccgtacaaaatttattgtacaaatatcactcctcttt 13592942  T

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Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 26509551 - 26509591
Alignment:
Q  1 taaaaagaggagaaaagtagttgtcacaagagtcgtacaaa 41  Q
    ||||||||||||||||||||||||||||||||| |||||||    
T  26509551 taaaaagaggagaaaagtagttgtcacaagagttgtacaaa 26509591  T

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Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 26629051 - 26628995
Alignment:
Q  13 aaaagtagttgtcacaagagtcgtacaaaattggttgtacaaatatcaatcctcttt 69  Q
    |||||| ||||||||||  || |||||||||||||||||||||||||| ||||||||    
T  26629051 aaaagtggttgtcacaaatgttgtacaaaattggttgtacaaatatcactcctcttt 26628995  T

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Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 45108657 - 45108605
Alignment:
Q  13 aaaagtagttgtcacaagagtcgtacaaaattggttgtacaaatatcaatcct 65  Q
    ||||||| || |||||||||| |||||||||||||||||||||||||| ||||    
T  45108657 aaaagtaattatcacaagagttgtacaaaattggttgtacaaatatcactcct 45108605  T

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Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 31415169 - 31415112
Alignment:
Q  1 taaaaagaggagaaaagtagttgtcacaagagtcgtacaaaattggttgtacaaatat 58  Q
    ||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  31415169 taaaaagagaagaaaagtagttgtcacaagagttgtacaaaattggttgtataaatat 31415112  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 18423717 - 18423649
Alignment:
Q  1 taaaaagaggagaaaagtagttgtcacaagagtcgtacaaaattggttgtacaaatatcaatcctcttta 70  Q
    ||||||||| ||||||||||||||||||||||| ||||||||||||  |||||||||||| || ||||||    
T  18423717 taaaaagagaagaaaagtagttgtcacaagagttgtacaaaattgg-cgtacaaatatcactcttcttta 18423649  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 66
Target Start/End: Complemental strand, 13453897 - 13453844
Alignment:
Q  13 aaaagtagttgtcacaagagtcgtacaaaattggttgtacaaatatcaatcctc 66  Q
    |||||| |||||||||| | | ||| |||||||||||||||||||||| |||||    
T  13453897 aaaagtggttgtcacaaaaattgtataaaattggttgtacaaatatcactcctc 13453844  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 66
Target Start/End: Original strand, 22966923 - 22966968
Alignment:
Q  21 ttgtcacaagagtcgtacaaaattggttgtacaaatatcaatcctc 66  Q
    |||||||||  || |||||||||||||||||||||||||| |||||    
T  22966923 ttgtcacaaaggttgtacaaaattggttgtacaaatatcactcctc 22966968  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 34432432 - 34432392
Alignment:
Q  20 gttgtcacaagagtcgtacaaaattggttgtacaaatatca 60  Q
    ||||||| || ||| ||||||||||||||||||||||||||    
T  34432432 gttgtcaaaaaagttgtacaaaattggttgtacaaatatca 34432392  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 67
Target Start/End: Complemental strand, 31204752 - 31204698
Alignment:
Q  13 aaaagtagttgtcacaagagtcgtacaaaattggttgtacaaatatcaatcctct 67  Q
    |||||| ||||||||||  || ||||||||||| |||||||||||||| ||||||    
T  31204752 aaaagtggttgtcacaaaggttgtacaaaattgattgtacaaatatcactcctct 31204698  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 58
Target Start/End: Complemental strand, 35883549 - 35883504
Alignment:
Q  13 aaaagtagttgtcacaagagtcgtacaaaattggttgtacaaatat 58  Q
    |||||| ||||||||||  || ||||||||||||||||||||||||    
T  35883549 aaaagtggttgtcacaaaggttgtacaaaattggttgtacaaatat 35883504  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 49139693 - 49139640
Alignment:
Q  2 aaaaagaggagaaaagtagttgtcacaagagtcgtacaaaattggttgtacaaa 55  Q
    ||||||||||||||| ||||||||| || |||  |||||||||| |||||||||    
T  49139693 aaaaagaggagaaaaatagttgtcataaaagttatacaaaattgattgtacaaa 49139640  T

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