View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4193_low_44 (Length: 271)

Name: NF4193_low_44
Description: NF4193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4193_low_44
NF4193_low_44
[»] chr4 (9 HSPs)
chr4 (1-271)||(36980440-36980710)
chr4 (1-271)||(36996315-36996585)
chr4 (16-214)||(36995668-36995866)
chr4 (9-173)||(36986225-36986395)
chr4 (71-125)||(36979852-36979906)
chr4 (1-189)||(36978932-36979120)
chr4 (71-172)||(37000415-37000516)
chr4 (1-72)||(36985178-36985249)
chr4 (79-123)||(36984481-36984525)


Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 36980710 - 36980440
Alignment:
Q  1 tcatcagtcacagtggaaaccaaaggaacagcagagagtgaaagggctggtggagaagttcctcggagttctacacagaaggaagtgcagagagagtgga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36980710 tcatcagtcacagtggaaaccaaaggaacagcagagagtgaaagggctggtggagaagttcctcggagttctacacagaaggaagtgcagagagagtgga 36980611  T
Q  101 cttgtgctatatgtttggtaacaacatcgcgtgagaaagacttgatttcccaccttaatggaaggaaacacagggatactagtgaagctttaatatcaaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36980610 cttgtgctatatgtttggtaacaacatcgcgtgagaaagacttgatttcccaccttaatggaaggaaacacagggatactagtgaagctttaatatcaaa 36980511  T
Q  201 gaagcaacctacccggcagaagcaaaagggtgcagaagcgacaacaaataaaaccatagctactgataata 271  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36980510 gaagcaacctacccggcagaagcaaaagggtgcagaagcgacaacaaataaaaccatagctactgataata 36980440  T

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Target: chr4; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 36996585 - 36996315
Alignment:
Q  1 tcatcagtcacagtggaaaccaaaggaacagcagagagtgaaagggctggtggagaagttcctcggagttctacacagaaggaagtgcagagagagtgga 100  Q
    |||||||||||||||||||| |||||||||||||||||||| || |||||||||||  ||||   |  || ||||||||||||| |||||| | ||||||    
T  36996585 tcatcagtcacagtggaaactaaaggaacagcagagagtgacagagctggtggagagtttccaaaggattgtacacagaaggaaatgcagaaaaagtgga 36996486  T
Q  101 cttgtgctatatgtttggtaacaacatcgcgtgagaaagacttgatttcccaccttaatggaaggaaacacagggatactagtgaagcttta---atatc 197  Q
    |||||||| ||||||||||||||||  |  |  | |||||||||| ||| ||||| | ||| ||||||||||| ||||||| ||||||||||   ||| |    
T  36996485 cttgtgctttatgtttggtaacaactacaagcaataaagacttgaattcgcacctcactgggaggaaacacagagatactattgaagctttatcgatagc 36996386  T
Q  198 aaagaagcaacctacccggcagaagcaaaagggtgcagaagcgacaacaaataaaaccatagctactgataata 271  Q
    ||| ||||||||||||| |||||||||||||| |||||||| |   |||||| ||| ||| |||||||||||||    
T  36996385 aaacaagcaacctaccctgcagaagcaaaaggatgcagaaggg---acaaatgaaatcatggctactgataata 36996315  T

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Target: chr4; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 16 - 214
Target Start/End: Complemental strand, 36995866 - 36995668
Alignment:
Q  16 gaaaccaaaggaacagcagagagtgaaagggctggtggagaagttcctcggagttctacacagaaggaagtgcagagagagtggacttgtgctatatgtt 115  Q
    |||||||||||||||||||||||||  |  ||| ||||||| ||||||| ||||||||||||||||| |||||||| |||||||||||||||| ||||||    
T  36995866 gaaaccaaaggaacagcagagagtgtcacagcttgtggagaggttcctcagagttctacacagaaggcagtgcagaaagagtggacttgtgctttatgtt 36995767  T
Q  116 tggtaacaacatcgcgtgagaaagacttgatttcccaccttaatggaaggaaacacagggatactagtgaagctttaatatcaaagaagcaacctaccc 214  Q
    |||||||     || ||||||||  ||||||||||||||| |  ||||||| ||||||||| ||||  ||||  || | | ||||||||||||||||||    
T  36995766 tggtaacggttacgtgtgagaaaaccttgatttcccacctcaggggaaggagacacagggaaactatggaagtgttgaaagcaaagaagcaacctaccc 36995668  T

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Target: chr4; HSP #4
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 9 - 173
Target Start/End: Complemental strand, 36986395 - 36986225
Alignment:
Q  9 cacagtggaaaccaaaggaacagcagagagtgaaagggctggtggagaagttcctcggagttctac------acagaaggaagtgcagagagagtggact 102  Q
    ||||||||||||||| | ||||||||| ||  | || ||||||||||| ||||||| |||||||||      ||||||||||||||||| ||||||||||    
T  36986395 cacagtggaaaccaatgtaacagcagaaagaaacagcgctggtggagaggttcctcagagttctacttctacacagaaggaagtgcagaaagagtggact 36986296  T
Q  103 tgtgctatatgtttggtaacaacatcgcgtgagaaagacttgatttcccaccttaatggaaggaaacacag 173  Q
    |||||| ||||||||||||||||| || ||||||||  ||||| ||||||||| | ||||| |||||||||    
T  36986295 tgtgctttatgtttggtaacaacaacgagtgagaaaatcttgaattcccacctgagtggaaagaaacacag 36986225  T

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Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 71 - 125
Target Start/End: Complemental strand, 36979906 - 36979852
Alignment:
Q  71 ctacacagaaggaagtgcagagagagtggacttgtgctatatgtttggtaacaac 125  Q
    |||||||||||||||||| || |||||||||||||||| ||||||||||||||||    
T  36979906 ctacacagaaggaagtgccgaaagagtggacttgtgctttatgtttggtaacaac 36979852  T

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Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 36979120 - 36978932
Alignment:
Q  1 tcatcagtcacagtggaaaccaaaggaacagcagagagtgaaagggctggtggagaagttcctcg-gagttctacacagaaggaagtgcagagagagtgg 99  Q
    ||||||| |||||| ||||| |||||||||||| ||||||| |  ||||||| ||| ||  |||  ||||||||| ||||||||| |||||  |||||||    
T  36979120 tcatcagccacagtagaaactaaaggaacagcaaagagtgacaaagctggtgaaga-gtatctcaagagttctacgcagaaggaactgcaggaagagtgg 36979022  T
Q  100 acttgtgctatatgtttggtaacaacatcgcgtgagaaagacttgatttcccaccttaatggaaggaaacacagggatactagtgaagct 189  Q
     |||| ||| | || | ||||||||||||| |  ||| |  ||||| |||||| |||||||| ||||||||||||| || | ||||||||    
T  36979021 ccttgcgctttgtgctcggtaacaacatcgagcaagataaccttgaattcccatcttaatgggaggaaacacagggctagttgtgaagct 36978932  T

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Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 71 - 172
Target Start/End: Complemental strand, 37000516 - 37000415
Alignment:
Q  71 ctacacagaaggaagtgcagagagagtggacttgtgctatatgtttggtaacaacatcgcgtgagaaagacttgatttcccaccttaatggaaggaaaca 170  Q
    |||||||||||||||||| ||   |||||||||||||| ||||| | |||||||||||| | ||||||   |||| ||||||||| ||||| ||||||||    
T  37000516 ctacacagaaggaagtgccgaagaagtggacttgtgctttatgtattgtaacaacatcgagcgagaaaactttgaattcccacctcaatgggaggaaaca 37000417  T
Q  171 ca 172  Q
    ||    
T  37000416 ca 37000415  T

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Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 36985249 - 36985178
Alignment:
Q  1 tcatcagtcacagtggaaaccaaaggaacagcagagagtgaaagggctggtggagaagttcctcggagttct 72  Q
    ||||||| | ||||||||||||||||||||| |||| | || |||||||||||||| ||||||| |||||||    
T  36985249 tcatcagcctcagtggaaaccaaaggaacagtagagggggacagggctggtggagaggttcctcagagttct 36985178  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 123
Target Start/End: Complemental strand, 36984525 - 36984481
Alignment:
Q  79 aaggaagtgcagagagagtggacttgtgctatatgtttggtaaca 123  Q
    ||||||||||||| ||||||| | |||||| ||||||||||||||    
T  36984525 aaggaagtgcagaaagagtgggcatgtgctttatgtttggtaaca 36984481  T

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