View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4193_low_47 (Length: 264)
Name: NF4193_low_47
Description: NF4193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4193_low_47 |
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Alignment Details
Target: chr7 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 112 - 247
Target Start/End: Original strand, 1095865 - 1096000
Alignment:
| Q |
112 |
agtgagtaagaatacttttcattatagggcaacactagtaacacctcctagttattagtggccgtttcattgttaggtggaacacctagaatgcctttgt |
211 |
Q |
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| T |
1095865 |
agtgagtaagaatacttttcattatagggcaacactagtaacacctcctagttattagtggtcgtttcattgttaggtggaacacctagaatgcctttgt |
1095964 |
T |
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| Q |
212 |
ttaattttcgtcattgtattcaggctgcgaattctg |
247 |
Q |
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| T |
1095965 |
caaattttcgtcattgtattcaggctgcaaattctg |
1096000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 1095765 - 1095824
Alignment:
| Q |
18 |
aaatcatgctgagcttctcgttcgtatatatttgttttcattgtttcagttccagctact |
77 |
Q |
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|||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
1095765 |
aaattatgctgagcttctccttcgtatatatttgttttcattgtttcagttccagctact |
1095824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 104; Significance: 6e-52; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 112 - 246
Target Start/End: Complemental strand, 9891419 - 9891284
Alignment:
| Q |
112 |
agtgagtaagaatacttttcattatagggcaacactagt-aacacctcctagttattagtggccgtttcattgttaggtggaacacctagaatgcctttg |
210 |
Q |
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| T |
9891419 |
agtgagtaagaatacttttcattatagggtaaaactagtgaacatctcctagttattagtggctgtttcattgttaggtggaacacctagaatgcctttg |
9891320 |
T |
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| Q |
211 |
tttaattttcgtcattgtattcaggctgcgaattct |
246 |
Q |
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| T |
9891319 |
tctaattttcgtcattgttttcaggctgcgaattct |
9891284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 9891495 - 9891438
Alignment:
| Q |
18 |
aaatcatgctgagcttctcgttcgtatatatttgttttcattgtttcagttccagcta |
75 |
Q |
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|||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
9891495 |
aaattatgctgagctgctcgttcgtatatatttgttttcattgtttcagttccagcta |
9891438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 72; Significance: 8e-33; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 148 - 247
Target Start/End: Complemental strand, 31253586 - 31253487
Alignment:
| Q |
148 |
agtaacacctcctagttattagtggccgtttcattgttaggtggaacacctagaatgcctttgtttaattttcgtcattgtattcaggctgcgaattctg |
247 |
Q |
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||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| ||||||||||| |||| |||||||||| ||||||| |
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| T |
31253586 |
agtaaaacctcctagttattagtggctgtttcattgttaggtggaacacctggaatgcctttgtctaattttcgtcgttgttttcaggctgcaaattctg |
31253487 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 112 - 247
Target Start/End: Complemental strand, 31236971 - 31236840
Alignment:
| Q |
112 |
agtgagtaagaatacttttcattatagggcaacactagt-aacacctcctagttattagtggccgtttcattgttaggtggaacacctagaatgcctttg |
210 |
Q |
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||||||||| |||||||||||||||||||||| | |||| |||||| ||||||||||||| |||||||||||||||||||| ||| ||||||||| |
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| T |
31236971 |
agtgagtaaaaatacttttcattatagggcaaaaatagttaacacca---agttattagtggctgtttcattgttaggtggaac--ctaagatgcctttg |
31236877 |
T |
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| Q |
211 |
tttaattttcgtcattgtattcaggctgcgaattctg |
247 |
Q |
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| ||||||||||| |||| |||||||||||||||||| |
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| T |
31236876 |
tctaattttcgtcgttgttttcaggctgcgaattctg |
31236840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 31237071 - 31237012
Alignment:
| Q |
18 |
aaatcatgctgagcttctcgttcgtatatatttgttttcattgtttcagttccagctact |
77 |
Q |
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|||| |||||||| | ||| |||||||||||||||||||||||||||||| ||||||||| |
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| T |
31237071 |
aaattatgctgaggtactcattcgtatatatttgttttcattgtttcagtcccagctact |
31237012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 31253690 - 31253631
Alignment:
| Q |
18 |
aaatcatgctgagcttctcgttcgtatatatttgttttcattgtttcagttccagctact |
77 |
Q |
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|||| |||||||||| ||| ||| |||||| ||||||||||||||||||||||||||||| |
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| T |
31253690 |
aaattatgctgagctgctcattcatatataattgttttcattgtttcagttccagctact |
31253631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 162 - 239
Target Start/End: Original strand, 31003743 - 31003820
Alignment:
| Q |
162 |
gttattagtggccgtttcattgttaggtggaacacctagaatgcctttgtttaattttcgtcattgtattcaggctgc |
239 |
Q |
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| T |
31003743 |
gttattagtggctgtttcactgttagatagaacacctagaatgaattggtctaatatttggcattgttttcaggctgc |
31003820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 191 - 247
Target Start/End: Original strand, 442523 - 442579
Alignment:
| Q |
191 |
gaacacctagaatgcctttgtttaattttcgtcattgtattcaggctgcgaattctg |
247 |
Q |
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| T |
442523 |
gaacacctagaatgcctttgtctaattttcgtcattgttttcaggctgcaaattctg |
442579 |
T |
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