View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4193_low_53 (Length: 253)
Name: NF4193_low_53
Description: NF4193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4193_low_53 |
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Alignment Details
Target: chr4 (Bit Score: 87; Significance: 8e-42; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 22 - 129
Target Start/End: Original strand, 36070134 - 36070241
Alignment:
| Q |
22 |
catacaaagatacacatacatccttatatcttaagtatggcaatgtatttgatccaaatttaggccaaatatatgtannnnnnngcttatatttataatg |
121 |
Q |
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| T |
36070134 |
catacaaagatacacatacatccttatatcttaagtatggcaatgtatttgatccaaatttaggccaaatatatgtatttttttgcttatatttataatg |
36070233 |
T |
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| Q |
122 |
agatggag |
129 |
Q |
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|||||||| |
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| T |
36070234 |
agatggag |
36070241 |
T |
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Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 194 - 253
Target Start/End: Original strand, 36070307 - 36070366
Alignment:
| Q |
194 |
tatatagcatatgagaaaatatatgaggaatcggtttacatactcttctttttcagtttt |
253 |
Q |
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| T |
36070307 |
tatatagcatatgagaaaatatacgaggaatcggtttacatactcttctttttcagtttt |
36070366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 98
Target Start/End: Original strand, 29029260 - 29029343
Alignment:
| Q |
19 |
caacatacaaagatacacatacatccttat----atcttaagtatggcaatgtatttgatccaaatttaggccaaatatatgta |
98 |
Q |
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| T |
29029260 |
caacatacaaaaatacacatacatcgttaattagatcttaagtatggaaatgtatttgatccaaatttaaactaaatatatgta |
29029343 |
T |
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