View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4193_low_55 (Length: 250)
Name: NF4193_low_55
Description: NF4193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4193_low_55 |
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Alignment Details
Target: chr2 (Bit Score: 168; Significance: 4e-90; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 48 - 231
Target Start/End: Complemental strand, 32812235 - 32812052
Alignment:
| Q |
48 |
gcattggtatcgtgatgagtatgaattcctacatcggatttgttccaagtatggtgtgatactcaaagaactaagagatgtttgaatatacactctactc |
147 |
Q |
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| T |
32812235 |
gcattggtaacgtgatgagtatgaattcctacatcggatttgttccaagtatggtgtgatactcaaagaactaagagatgtttgaatatacactctactc |
32812136 |
T |
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| Q |
148 |
tttgcattttcatccatcttacttgtaatggcagattggaattgagcaagtatttggataatataatccaacttttcagattgg |
231 |
Q |
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| T |
32812135 |
tttccattttcatccatcttacttgtaatggcagattggaattgagcaagtatttggagaatataatctaacttttcagattgg |
32812052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 28213446 - 28213199
Alignment:
| Q |
1 |
taatttagcacctaaattaataattggctataggttgatatcctcttgcattggtatcgtgatgagtatgaattcctacatcggatttgttccaagtatg |
100 |
Q |
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| T |
28213446 |
taatttagcacctaaactaataattggctgtaggttgatctcttctcgcatcggtatcatgatgagtatgaattcctacgtaggatttgttctaagtgcg |
28213347 |
T |
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| Q |
101 |
gtgtgatactcaaagaactaagagatgtttgaatatacac---------tctactctttgcattttcatccatcttacttgtaatggcagattggaattg |
191 |
Q |
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| T |
28213346 |
gtgtgatactcaaaggacttagggttatttaaatatccacattggtggttctactcttt-caatttcatccatcttacttgaaatgacagattggaaatt |
28213248 |
T |
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| Q |
192 |
agcaagtatttggataatataatccaacttttcagattgggatcctttg |
240 |
Q |
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| T |
28213247 |
agcaagttgttggagaatctcatccaacttttcagattgggatcctttg |
28213199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 141 - 216
Target Start/End: Original strand, 32311355 - 32311430
Alignment:
| Q |
141 |
tctactctttgcattttcatccatcttacttgtaatggcagattggaattgagcaagtatttggataatataatcc |
216 |
Q |
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| T |
32311355 |
tctactctatccattttcatccatcttacttgtattagcagattggaattgagcaagtatttggagaatataatcc |
32311430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 32790114 - 32790044
Alignment:
| Q |
1 |
taatttagcacctaaattaataattggctataggttgatatcctcttgcattggtatcgtgatgagtatga |
71 |
Q |
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| T |
32790114 |
taatttagcacctaaattaataattggctataggttgatctcctctcgcgttggtatcatgatgagtatga |
32790044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 141 - 216
Target Start/End: Complemental strand, 32790026 - 32789951
Alignment:
| Q |
141 |
tctactctttgcattttcatccatcttacttgtaatggcagattggaattgagcaagtatttggataatataatcc |
216 |
Q |
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| T |
32790026 |
tctactctatccattttcatccatcttacttgtattggcagattggaattgagcaagtatttgaagaataaaatcc |
32789951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 32311321 - 32311355
Alignment:
| Q |
1 |
taatttagcacctaaattaataattggctataggt |
35 |
Q |
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| T |
32311321 |
taatttagcacctaaattaataattggctataggt |
32311355 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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