View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4193_low_56 (Length: 250)

Name: NF4193_low_56
Description: NF4193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4193_low_56
NF4193_low_56
[»] chr1 (11 HSPs)
chr1 (78-233)||(1599080-1599233)
chr1 (162-233)||(8352184-8352255)
chr1 (18-60)||(1599250-1599292)
chr1 (169-231)||(12321477-12321539)
chr1 (170-230)||(50692138-50692198)
chr1 (185-228)||(27559971-27560014)
chr1 (171-232)||(4604888-4604949)
chr1 (193-230)||(21945110-21945147)
chr1 (170-231)||(46673867-46673928)
chr1 (173-226)||(48377825-48377878)
chr1 (188-232)||(36141720-36141764)
[»] scaffold0018 (1 HSPs)
scaffold0018 (169-232)||(135826-135889)
[»] chr4 (9 HSPs)
chr4 (163-221)||(27952528-27952586)
chr4 (154-215)||(52760255-52760316)
chr4 (173-230)||(53658420-53658477)
chr4 (170-218)||(47493229-47493277)
chr4 (162-228)||(46518474-46518540)
chr4 (170-231)||(32125389-32125450)
chr4 (173-230)||(40025983-40026040)
chr4 (168-228)||(20114117-20114177)
chr4 (162-206)||(52673618-52673662)
[»] chr6 (5 HSPs)
chr6 (180-231)||(16433951-16434002)
chr6 (173-228)||(32650127-32650182)
chr6 (193-231)||(9605418-9605456)
chr6 (171-216)||(5483931-5483976)
chr6 (193-230)||(27159122-27159159)
[»] chr5 (7 HSPs)
chr5 (173-228)||(8235435-8235490)
chr5 (173-227)||(12676144-12676198)
chr5 (194-228)||(30778052-30778086)
chr5 (171-208)||(34445335-34445372)
chr5 (168-228)||(5002198-5002258)
chr5 (192-232)||(8047691-8047731)
chr5 (154-206)||(26221036-26221088)
[»] chr7 (4 HSPs)
chr7 (154-232)||(4132437-4132515)
chr7 (152-208)||(39854730-39854786)
chr7 (173-211)||(37624335-37624373)
chr7 (170-228)||(40362028-40362086)
[»] chr3 (4 HSPs)
chr3 (169-230)||(27697318-27697379)
chr3 (171-226)||(9502901-9502956)
chr3 (185-228)||(29290836-29290879)
chr3 (162-231)||(49733642-49733713)
[»] chr8 (5 HSPs)
chr8 (169-231)||(30857280-30857342)
chr8 (193-230)||(4578239-4578276)
chr8 (168-232)||(7693063-7693127)
chr8 (168-228)||(10396822-10396882)
chr8 (194-230)||(43447896-43447932)
[»] chr2 (3 HSPs)
chr2 (194-228)||(40532837-40532871)
chr2 (163-232)||(6458589-6458658)
chr2 (171-232)||(28248966-28249027)
[»] scaffold0020 (1 HSPs)
scaffold0020 (171-227)||(133673-133729)


Alignment Details
Target: chr1 (Bit Score: 113; Significance: 2e-57; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 78 - 233
Target Start/End: Complemental strand, 1599233 - 1599080
Alignment:
Q  78 tccattgacatcgtaaaatacatagcataaaatgaggggggaaagttggctaaaaaacatatatatatcagatacaattacaaacaaaactttacttttt 177  Q
    |||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||  ||||||||||||||||||| |||||||| |||| |||||||    
T  1599233 tccattgacatcataaaatacatagcataaaatgagggggaaaagttgtctaaaaaa--tatatatatcagatacaataacaaacaacacttcacttttt 1599136  T
Q  178 agattttttgaataactaatgtatttagtctataatatatatcaaatacattaatc 233  Q
    ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||    
T  1599135 agattttttaaataactaatgtatttagtctataatatatatcagatacattaatc 1599080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 233
Target Start/End: Complemental strand, 8352255 - 8352184
Alignment:
Q  162 caaaactttactttttagattttttgaataactaatgtatttagtctataatatatatcaaatacattaatc 233  Q
    ||||||||  |||||||||| | |||||||| ||||||||||| ||||||||| |||| | |||||||||||    
T  8352255 caaaacttccctttttagatatattgaataattaatgtatttattctataataaatattagatacattaatc 8352184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 1599292 - 1599250
Alignment:
Q  18 gtgggatagctttgtggtttaatatattccattttaatttctt 60  Q
    |||||||| |||||||||||||||||||||||||| |||||||    
T  1599292 gtgggataactttgtggtttaatatattccattttgatttctt 1599250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 169 - 231
Target Start/End: Original strand, 12321477 - 12321539
Alignment:
Q  169 ttactttttagattttttgaataactaatgtatttagtctataatatatatcaaatacattaa 231  Q
    ||||||||||| ||| || || | ||||||||||| |||||||||||||||||| ||||||||    
T  12321477 ttactttttaggtttattaaaaatctaatgtatttggtctataatatatatcaactacattaa 12321539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 230
Target Start/End: Complemental strand, 50692198 - 50692138
Alignment:
Q  170 tactttttagattttttgaataactaatgtatttagtctataatatatatcaaatacatta 230  Q
    ||||||||||||| || |||||  ||||||||||  ||||||||||||| |||||||||||    
T  50692198 tactttttagattcttagaatacgtaatgtatttgatctataatatataccaaatacatta 50692138  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 228
Target Start/End: Original strand, 27559971 - 27560014
Alignment:
Q  185 ttgaataactaatgtatttagtctataatatatatcaaatacat 228  Q
    ||||||| ||||||||||| || |||||||||||||||||||||    
T  27559971 ttgaatatctaatgtatttggtttataatatatatcaaatacat 27560014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 232
Target Start/End: Complemental strand, 4604949 - 4604888
Alignment:
Q  171 actttttagattttttgaataactaatgtatttagtctataatatatatcaaatacattaat 232  Q
    ||||||||| ||| ||||||| ||||||||||| || |||| |||| | |||||||||||||    
T  4604949 actttttaggtttattgaatacctaatgtatttggtatatattataaaccaaatacattaat 4604888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 230
Target Start/End: Complemental strand, 21945147 - 21945110
Alignment:
Q  193 ctaatgtatttagtctataatatatatcaaatacatta 230  Q
    ||||||||||| |||||||||||||| |||||||||||    
T  21945147 ctaatgtatttggtctataatatataccaaatacatta 21945110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 231
Target Start/End: Original strand, 46673867 - 46673928
Alignment:
Q  170 tactttttagattttttgaataactaatgtatttagtctataatatatatcaaatacattaa 231  Q
    |||||||||||||  ||||||| ||||| ||||| ||||| | |||| ||||||||||||||    
T  46673867 tactttttagattcattgaatatctaatatatttggtctagattatagatcaaatacattaa 46673928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 226
Target Start/End: Original strand, 48377825 - 48377878
Alignment:
Q  173 tttttagattttttgaataactaatgtatttagtctataatatatatcaaatac 226  Q
    |||| |||||| |||||||| | |||||||||||||||| |||| |||||||||    
T  48377825 ttttcagatttattgaataattgatgtatttagtctatattataaatcaaatac 48377878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 232
Target Start/End: Original strand, 36141720 - 36141764
Alignment:
Q  188 aataactaatgtatttagtctataatatatatcaaatacattaat 232  Q
    |||||||||||||||| |||| || |||| |||||||||||||||    
T  36141720 aataactaatgtatttggtctttattatagatcaaatacattaat 36141764  T

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Target: scaffold0018 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 169 - 232
Target Start/End: Complemental strand, 135889 - 135826
Alignment:
Q  169 ttactttttagattttttgaataactaatgtatttagtctataatatatatcaaatacattaat 232  Q
    |||||||||||| |  |||| ||||| ||||||||||||||||||||| |||||||||||||||    
T  135889 ttactttttagactcattgattaacttatgtatttagtctataatataaatcaaatacattaat 135826  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 163 - 221
Target Start/End: Complemental strand, 27952586 - 27952528
Alignment:
Q  163 aaaactttactttttagattttttgaataactaatgtatttagtctataatatatatca 221  Q
    |||| |||| ||||||||||| ||||||||||| ||||||| |||||||||||||||||    
T  27952586 aaaattttaatttttagatttgttgaataactattgtatttggtctataatatatatca 27952528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 215
Target Start/End: Original strand, 52760255 - 52760316
Alignment:
Q  154 attacaaacaaaactttactttttagattttttgaataactaatgtatttagtctataatat 215  Q
    |||| |||||||| || ||||||||||||| |||||||||  ||||||||||| ||||||||    
T  52760255 attataaacaaaatttaactttttagatttattgaataacacatgtatttagtatataatat 52760316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 230
Target Start/End: Complemental strand, 53658477 - 53658420
Alignment:
Q  173 tttttagattttttgaataactaatgtatttagtctataatatatatcaaatacatta 230  Q
    ||||||||||| ||| ||||||||||||||| ||||| |||||| | |||||||||||    
T  53658477 tttttagatttattgtataactaatgtattttgtctagaatatagaccaaatacatta 53658420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 218
Target Start/End: Original strand, 47493229 - 47493277
Alignment:
Q  170 tactttttagattttttgaataactaatgtatttagtctataatatata 218  Q
    |||||||||||||| ||||||| ||||||||||| |||||||| |||||    
T  47493229 tactttttagatttattgaatacctaatgtatttggtctataacatata 47493277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 228
Target Start/End: Complemental strand, 46518540 - 46518474
Alignment:
Q  162 caaaactttactttttagattttttgaataactaatgtatttagtctataatatatatcaaatacat 228  Q
    ||||| || ||||||||| ||| || ||||| | |||||||||||| |||||||||| |||||||||    
T  46518540 caaaaattaactttttaggtttattcaataaatgatgtatttagtcaataatatataccaaatacat 46518474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 231
Target Start/End: Complemental strand, 32125450 - 32125389
Alignment:
Q  170 tactttttagattttttgaataactaatgtatttagtctataatatatatcaaatacattaa 231  Q
    |||||||||| ||  ||||||| ||||||||| | |||||||||||||| ||| ||||||||    
T  32125450 tactttttaggttcattgaatatctaatgtatgtggtctataatatataccaagtacattaa 32125389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 230
Target Start/End: Original strand, 40025983 - 40026040
Alignment:
Q  173 tttttagattttttgaataactaatgtatttagtctataatatatatcaaatacatta 230  Q
    ||||||||||||||||||||||||| ||||  || | ||||||| |||||||| ||||    
T  40025983 tttttagattttttgaataactaatatattcggtttgtaatataaatcaaatatatta 40026040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 228
Target Start/End: Complemental strand, 20114177 - 20114117
Alignment:
Q  168 tttactttttagattttttgaataactaatgtatttagtctataatatatatcaaatacat 228  Q
    |||||||||||||||  ||||||||||||||||| | ||||||| | || | |||||||||    
T  20114177 tttactttttagattaattgaataactaatgtatatggtctatattctaaaccaaatacat 20114117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 206
Target Start/End: Original strand, 52673618 - 52673662
Alignment:
Q  162 caaaactttactttttagattttttgaataactaatgtatttagt 206  Q
    |||||||||||||||||||| | |||||||| |||||||| ||||    
T  52673618 caaaactttactttttagatatattgaataattaatgtatctagt 52673662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 231
Target Start/End: Complemental strand, 16434002 - 16433951
Alignment:
Q  180 attttttgaataactaatgtatttagtctataatatatatcaaatacattaa 231  Q
    |||| ||||||| |||||||||||  ||||||||||||||||||||||||||    
T  16434002 atttattgaatatctaatgtatttgatctataatatatatcaaatacattaa 16433951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 228
Target Start/End: Original strand, 32650127 - 32650182
Alignment:
Q  173 tttttagattttttgaataactaatgtatttagtctataatatatatcaaatacat 228  Q
    ||||||||||| ||||||| ||||| ||||||||||||| |||||| |||||||||    
T  32650127 tttttagatttattgaatacctaatatatttagtctatattatataccaaatacat 32650182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 193 - 231
Target Start/End: Complemental strand, 9605456 - 9605418
Alignment:
Q  193 ctaatgtatttagtctataatatatatcaaatacattaa 231  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  9605456 ctaatgtatttggtctataatatatatcaaatacattaa 9605418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 216
Target Start/End: Complemental strand, 5483976 - 5483931
Alignment:
Q  171 actttttagattttttgaataactaatgtatttagtctataatata 216  Q
    ||||||||||||  |||||||| |||||||||||||||| ||||||    
T  5483976 actttttagattcgttgaataattaatgtatttagtctaaaatata 5483931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 230
Target Start/End: Complemental strand, 27159159 - 27159122
Alignment:
Q  193 ctaatgtatttagtctataatatatatcaaatacatta 230  Q
    |||||||||||  |||||||||||||||||||||||||    
T  27159159 ctaatgtatttgatctataatatatatcaaatacatta 27159122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 228
Target Start/End: Complemental strand, 8235490 - 8235435
Alignment:
Q  173 tttttagattttttgaataactaatgtatttagtctataatatatatcaaatacat 228  Q
    ||||||||||| |||||||| |||| ||||| |||||||||||| |||||||||||    
T  8235490 tttttagatttattgaataattaatatatttggtctataatataaatcaaatacat 8235435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 227
Target Start/End: Original strand, 12676144 - 12676198
Alignment:
Q  173 tttttagattttttgaataactaatgtatttagtctataatatatatcaaataca 227  Q
    ||||||||||  |||||||||||||||||||  ||| ||||||| ||||||||||    
T  12676144 tttttagattcattgaataactaatgtatttgatctgtaatataaatcaaataca 12676198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 228
Target Start/End: Original strand, 30778052 - 30778086
Alignment:
Q  194 taatgtatttagtctataatatatatcaaatacat 228  Q
    |||||||||||||||||||||||||||| ||||||    
T  30778052 taatgtatttagtctataatatatatcacatacat 30778086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 208
Target Start/End: Complemental strand, 34445372 - 34445335
Alignment:
Q  171 actttttagattttttgaataactaatgtatttagtct 208  Q
    ||||||||||||| ||||||||||||||||||| ||||    
T  34445372 actttttagatttattgaataactaatgtatttggtct 34445335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 228
Target Start/End: Complemental strand, 5002258 - 5002198
Alignment:
Q  168 tttactttttagattttttgaataactaatgtatttagtctataatatatatcaaatacat 228  Q
    |||||||||||||||| |||| ||| | |||||| | ||||| |||||| |||||||||||    
T  5002258 tttactttttagatttattgagtaattgatgtatcttgtctaaaatatagatcaaatacat 5002198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 232
Target Start/End: Complemental strand, 8047731 - 8047691
Alignment:
Q  192 actaatgtatttagtctataatatatatcaaatacattaat 232  Q
    |||||||||| || |||||||||||||||| ||||||||||    
T  8047731 actaatgtatctaatctataatatatatcagatacattaat 8047691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 206
Target Start/End: Original strand, 26221036 - 26221088
Alignment:
Q  154 attacaaacaaaactttactttttagattttttgaataactaatgtatttagt 206  Q
    |||| |||||||||||||||||||||||   |||||||| |||||||| ||||    
T  26221036 attataaacaaaactttactttttagatacattgaataattaatgtatctagt 26221088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 154 - 232
Target Start/End: Complemental strand, 4132515 - 4132437
Alignment:
Q  154 attacaaacaaaactttactttttagattttttgaataactaatgtatttagtctataatatatatcaaatacattaat 232  Q
    |||| ||||||||||| |||||||||||   |||||||  ||||||||||||||||||||| |||  | ||||||||||    
T  4132515 attataaacaaaacttaactttttagatacattgaatatttaatgtatttagtctataataaatactatatacattaat 4132437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 208
Target Start/End: Original strand, 39854730 - 39854786
Alignment:
Q  152 caattacaaacaaaactttactttttagattttttgaataactaatgtatttagtct 208  Q
    |||||| ||| |||| |||| ||||||||||| || |||||||||||||||||||||    
T  39854730 caattataaataaaattttagtttttagatttatttaataactaatgtatttagtct 39854786  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 211
Target Start/End: Complemental strand, 37624373 - 37624335
Alignment:
Q  173 tttttagattttttgaataactaatgtatttagtctata 211  Q
    |||||||||| ||||||||||||||||||||||| ||||    
T  37624373 tttttagattctttgaataactaatgtatttagtttata 37624335  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 40362086 - 40362028
Alignment:
Q  170 tactttttagattttttgaataactaatgtatttagtctataatatatatcaaatacat 228  Q
    |||||||||| ||| |||||| | |||||||||| ||||| |||||| |||||||||||    
T  40362086 tactttttaggtttattgaatgattaatgtatttggtctacaatataaatcaaatacat 40362028  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 230
Target Start/End: Complemental strand, 27697379 - 27697318
Alignment:
Q  169 ttactttttagattttttgaataactaatgtatttagtctataatatatatcaaatacatta 230  Q
    ||||||||||| ||  ||||||| |||| ||||||||| |||||| ||||||||||||||||    
T  27697379 ttactttttaggttggttgaatacctaacgtatttagtttataatctatatcaaatacatta 27697318  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 171 - 226
Target Start/End: Original strand, 9502901 - 9502956
Alignment:
Q  171 actttttagattttttgaataactaatgtatttagtctataatatatatcaaatac 226  Q
    ||||||||||||  || || | ||||||||||| ||||||||||||||||||||||    
T  9502901 actttttagattcattcaacacctaatgtatttggtctataatatatatcaaatac 9502956  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 228
Target Start/End: Complemental strand, 29290879 - 29290836
Alignment:
Q  185 ttgaataactaatgtatttagtctataatatatatcaaatacat 228  Q
    |||||||||| ||||||||||||||||||||| |||| ||||||    
T  29290879 ttgaataacttatgtatttagtctataatatagatcagatacat 29290836  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 231
Target Start/End: Original strand, 49733642 - 49733713
Alignment:
Q  162 caaaactttactttttagattttttgaataactaatgtatttagtctataatatatat--caaatacattaa 231  Q
    |||||| | ||||||||||||| |||||||  ||||||||| ||  ||||||||||||  ||||||||||||    
T  49733642 caaaacataactttttagatttattgaatacttaatgtattgagcatataatatatataccaaatacattaa 49733713  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 231
Target Start/End: Complemental strand, 30857342 - 30857280
Alignment:
Q  169 ttactttttagattttttgaataactaatgtatttagtctataatatatatcaaatacattaa 231  Q
    ||||||||||||||| ||||||  ||||| |||||  | ||||||||||| ||||||||||||    
T  30857342 ttactttttagatttattgaatgcctaatatatttgatgtataatatataccaaatacattaa 30857280  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 230
Target Start/End: Original strand, 4578239 - 4578276
Alignment:
Q  193 ctaatgtatttagtctataatatatatcaaatacatta 230  Q
    ||||||||||| ||||||||||||||| ||||||||||    
T  4578239 ctaatgtatttggtctataatatatatgaaatacatta 4578276  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 232
Target Start/End: Original strand, 7693063 - 7693127
Alignment:
Q  168 tttactttttagattttttgaataactaatgtatttagtctataatatatatcaaatacattaat 232  Q
    |||||||||| ||||  ||| |||| | |||||||||||||||| | |||| |||||||||||||    
T  7693063 tttacttttttgattcattgcataaatgatgtatttagtctatattttataccaaatacattaat 7693127  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 228
Target Start/End: Original strand, 10396822 - 10396882
Alignment:
Q  168 tttactttttagattttttgaataactaatgtatttagtctataatatatatcaaatacat 228  Q
    |||||||||||||||  ||||||||||||||||| | ||||||| | || | |||||||||    
T  10396822 tttactttttagattaattgaataactaatgtatatggtctatattctaaaccaaatacat 10396882  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 230
Target Start/End: Original strand, 43447896 - 43447932
Alignment:
Q  194 taatgtatttagtctataatatatatcaaatacatta 230  Q
    |||| |||||||||||||||||||||||| |||||||    
T  43447896 taatttatttagtctataatatatatcaagtacatta 43447932  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 228
Target Start/End: Original strand, 40532837 - 40532871
Alignment:
Q  194 taatgtatttagtctataatatatatcaaatacat 228  Q
    |||||||||| ||||||||||||||||||||||||    
T  40532837 taatgtatttggtctataatatatatcaaatacat 40532871  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 232
Target Start/End: Complemental strand, 6458658 - 6458589
Alignment:
Q  163 aaaactttactttttagattttttgaataactaatgtatttagtctataatatatatcaaatacattaat 232  Q
    |||| |||| ||||||||||| |||| ||| |  |||||||  ||||||||||| |||||||||||||||    
T  6458658 aaaaatttaatttttagatttattgattaatttttgtatttgatctataatatagatcaaatacattaat 6458589  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 232
Target Start/End: Original strand, 28248966 - 28249027
Alignment:
Q  171 actttttagattttttgaataactaatgtatttagtctataatatatatcaaatacattaat 232  Q
    ||||||| ||||  ||| |||| |||||||||||||||||| | |||| |||||||||||||    
T  28248966 acttttttgattaattgcataaataatgtatttagtctatattctataccaaatacattaat 28249027  T

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Target: scaffold0020 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 227
Target Start/End: Original strand, 133673 - 133729
Alignment:
Q  171 actttttagattttttgaataactaatgtatttagtctataatatatatcaaataca 227  Q
    ||||||||||||  |||| |||||||||||| | |||||||||| |||||| |||||    
T  133673 actttttagattgattgagtaactaatgtatctggtctataatacatatcagataca 133729  T

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