View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4193_low_57 (Length: 250)

Name: NF4193_low_57
Description: NF4193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4193_low_57
NF4193_low_57
[»] chr4 (19 HSPs)
chr4 (179-238)||(47516405-47516464)
chr4 (179-239)||(23978329-23978389)
chr4 (179-230)||(8013303-8013353)
chr4 (179-230)||(37911772-37911822)
chr4 (179-230)||(46070735-46070786)
chr4 (179-238)||(53848346-53848405)
chr4 (179-239)||(17187015-17187075)
chr4 (179-230)||(40410988-40411039)
chr4 (176-230)||(40553659-40553711)
chr4 (179-228)||(8178452-8178501)
chr4 (179-239)||(39078016-39078076)
chr4 (179-237)||(42915390-42915448)
chr4 (179-228)||(32012513-32012562)
chr4 (176-240)||(32410208-32410270)
chr4 (189-230)||(55937899-55937940)
chr4 (179-239)||(35529530-35529590)
chr4 (179-227)||(49080145-49080193)
chr4 (179-239)||(52712937-52712997)
chr4 (179-230)||(55580534-55580586)
[»] chr3 (24 HSPs)
chr3 (179-230)||(38401267-38401318)
chr3 (179-230)||(21214128-21214179)
chr3 (179-230)||(10114799-10114850)
chr3 (179-246)||(34022492-34022559)
chr3 (179-230)||(22456188-22456239)
chr3 (179-230)||(22479234-22479285)
chr3 (179-222)||(54725783-54725826)
chr3 (179-237)||(27876095-27876153)
chr3 (179-224)||(23209460-23209505)
chr3 (179-239)||(10251889-10251949)
chr3 (179-239)||(35963014-35963074)
chr3 (183-239)||(36189192-36189248)
chr3 (179-218)||(14752407-14752446)
chr3 (184-227)||(26207711-26207754)
chr3 (179-238)||(29676910-29676969)
chr3 (179-238)||(41935502-41935560)
chr3 (179-230)||(45347850-45347901)
chr3 (179-230)||(46819936-46819987)
chr3 (179-230)||(47444156-47444207)
chr3 (179-237)||(33974758-33974816)
chr3 (179-220)||(32070144-32070185)
chr3 (179-238)||(6784216-6784272)
chr3 (179-230)||(7615099-7615153)
chr3 (179-239)||(30454905-30454964)
[»] chr1 (31 HSPs)
chr1 (179-227)||(41063633-41063681)
chr1 (179-238)||(16661397-16661455)
chr1 (179-227)||(5858593-5858641)
chr1 (182-230)||(13291701-13291749)
chr1 (179-230)||(45840269-45840321)
chr1 (179-230)||(25185550-25185601)
chr1 (179-230)||(44512612-44512663)
chr1 (179-241)||(15959880-15959942)
chr1 (179-224)||(7397602-7397647)
chr1 (179-231)||(37538698-37538749)
chr1 (179-218)||(6786719-6786758)
chr1 (179-222)||(15912097-15912140)
chr1 (179-218)||(16854017-16854056)
chr1 (179-230)||(29488634-29488685)
chr1 (179-238)||(32624215-32624274)
chr1 (179-230)||(38942664-38942715)
chr1 (179-230)||(40935836-40935887)
chr1 (179-230)||(40960697-40960748)
chr1 (179-218)||(46542863-46542902)
chr1 (179-230)||(47600280-47600331)
chr1 (179-230)||(49924305-49924356)
chr1 (179-218)||(50665139-50665178)
chr1 (206-240)||(2126219-2126253)
chr1 (206-239)||(32623960-32623993)
chr1 (179-240)||(46949197-46949258)
chr1 (179-215)||(4672784-4672820)
chr1 (179-239)||(6787231-6787291)
chr1 (179-239)||(25990626-25990685)
chr1 (206-242)||(43667254-43667290)
chr1 (179-211)||(46804752-46804784)
chr1 (179-239)||(52841668-52841728)
[»] scaffold0565 (1 HSPs)
scaffold0565 (179-230)||(6093-6144)
[»] chr8 (13 HSPs)
chr8 (179-230)||(5217279-5217330)
chr8 (179-224)||(17713116-17713161)
chr8 (179-237)||(24510905-24510963)
chr8 (179-237)||(36537940-36537998)
chr8 (179-227)||(41426181-41426229)
chr8 (179-230)||(41791681-41791733)
chr8 (179-230)||(11043946-11043997)
chr8 (179-230)||(24612701-24612752)
chr8 (179-218)||(34890415-34890454)
chr8 (179-225)||(17314723-17314768)
chr8 (179-211)||(8107860-8107892)
chr8 (179-227)||(29147458-29147505)
chr8 (179-230)||(41362867-41362923)
[»] chr5 (10 HSPs)
chr5 (179-238)||(28906950-28907008)
chr5 (179-238)||(28943345-28943403)
chr5 (179-244)||(24439446-24439511)
chr5 (179-230)||(8146625-8146675)
chr5 (179-238)||(30893572-30893631)
chr5 (179-230)||(35462938-35462989)
chr5 (179-218)||(42273531-42273570)
chr5 (179-237)||(25840726-25840784)
chr5 (179-240)||(842775-842835)
chr5 (179-239)||(37562971-37563031)
[»] chr2 (13 HSPs)
chr2 (179-239)||(13822979-13823040)
chr2 (179-226)||(32009995-32010042)
chr2 (179-230)||(38070886-38070936)
chr2 (179-239)||(21539634-21539694)
chr2 (179-239)||(26998198-26998257)
chr2 (179-230)||(9709404-9709454)
chr2 (179-230)||(15068632-15068683)
chr2 (179-218)||(19263981-19264020)
chr2 (179-218)||(33198874-33198913)
chr2 (179-239)||(44442011-44442073)
chr2 (179-240)||(6110409-6110470)
chr2 (206-238)||(4891850-4891882)
chr2 (179-239)||(29514693-29514753)
[»] chr7 (10 HSPs)
chr7 (179-239)||(22624034-22624094)
chr7 (179-218)||(6190927-6190966)
chr7 (179-222)||(30082257-30082300)
chr7 (179-230)||(41815871-41815922)
chr7 (179-230)||(44600331-44600382)
chr7 (179-218)||(47778654-47778693)
chr7 (179-239)||(25944437-25944497)
chr7 (189-241)||(35181066-35181118)
chr7 (179-211)||(38260223-38260255)
chr7 (179-239)||(41890438-41890498)
[»] chr6 (8 HSPs)
chr6 (179-230)||(4987830-4987881)
chr6 (179-222)||(5300813-5300856)
chr6 (179-230)||(5822242-5822292)
chr6 (179-230)||(5881973-5882023)
chr6 (179-239)||(31887342-31887402)
chr6 (179-230)||(4031874-4031925)
chr6 (180-230)||(16013612-16013664)
chr6 (179-211)||(1130425-1130457)
[»] scaffold0330 (1 HSPs)
scaffold0330 (179-239)||(3048-3108)


Alignment Details
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 179 - 238
Target Start/End: Original strand, 47516405 - 47516464
Alignment:
Q  179 tataatttgggacaaagaaaatgagtgttttttgcttataatttaggacggattgagtat 238  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||    
T  47516405 tataatttgggacaaagaaaatgtgtgttttttgcttataatttgggacggatggagtat 47516464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 179 - 239
Target Start/End: Original strand, 23978329 - 23978389
Alignment:
Q  179 tataatttgggacaaagaaaatgagtgttttttgcttataatttaggacggattgagtata 239  Q
    |||||||||||| ||||||||||||| |||||||||||||||||||||||||  |||||||    
T  23978329 tataatttgggataaagaaaatgagttttttttgcttataatttaggacggagggagtata 23978389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 179 - 230
Target Start/End: Original strand, 8013303 - 8013353
Alignment:
Q  179 tataatttgggacaaagaaaatgagtgttttttgcttataatttaggacgga 230  Q
    |||||||||||||||||||||||||| ||||||||||||||||| |||||||    
T  8013303 tataatttgggacaaagaaaatgagt-ttttttgcttataatttgggacgga 8013353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 179 - 230
Target Start/End: Complemental strand, 37911822 - 37911772
Alignment:
Q  179 tataatttgggacaaagaaaatgagtgttttttgcttataatttaggacgga 230  Q
    |||||||||||||||||||||||||| |||||||||||||||||| ||||||    
T  37911822 tataatttgggacaaagaaaatgagt-ttttttgcttataatttaagacgga 37911772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 179 - 230
Target Start/End: Original strand, 46070735 - 46070786
Alignment:
Q  179 tataatttgggacaaagaaaatgagtgttttttgcttataatttaggacgga 230  Q
    ||||||||||||||||||||||| || ||||||||||||||||| |||||||    
T  46070735 tataatttgggacaaagaaaatgggttttttttgcttataatttgggacgga 46070786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 179 - 238
Target Start/End: Complemental strand, 53848405 - 53848346
Alignment:
Q  179 tataatttgggacaaagaaaatgagtgttttttgcttataatttaggacggattgagtat 238  Q
    ||||||||||||||||||| |||||| |||||| |||||||||| |||||||| ||||||    
T  53848405 tataatttgggacaaagaagatgagtttttttttcttataatttgggacggatggagtat 53848346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 179 - 239
Target Start/End: Original strand, 17187015 - 17187075
Alignment:
Q  179 tataatttgggacaaagaaaatgagtgttttttgcttataatttaggacggattgagtata 239  Q
    |||| ||||||||||||||||||||| ||||||||||||| | |||||||||  |||||||    
T  17187015 tatattttgggacaaagaaaatgagttttttttgcttatattataggacggagggagtata 17187075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 179 - 230
Target Start/End: Complemental strand, 40411039 - 40410988
Alignment:
Q  179 tataatttgggacaaagaaaatgagtgttttttgcttataatttaggacgga 230  Q
    |||||||||| ||||||||||| ||| |||||| ||||||||||||||||||    
T  40411039 tataatttggaacaaagaaaataagtttttttttcttataatttaggacgga 40410988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 230
Target Start/End: Complemental strand, 40553711 - 40553659
Alignment:
Q  176 gcatataatttgggacaaagaaaatgagtgttttttgcttataatttaggacgga 230  Q
    |||||||||||||||||||||||||||  |||||||||||||| ||| |||||||    
T  40553711 gcatataatttgggacaaagaaaatga--gttttttgcttatattttgggacgga 40553659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 179 - 228
Target Start/End: Original strand, 8178452 - 8178501
Alignment:
Q  179 tataatttgggacaaagaaaatgagtgttttttgcttataatttaggacg 228  Q
    ||||||||| |||||||||||||| | |||||| ||||||||||||||||    
T  8178452 tataatttgagacaaagaaaatgaattttttttccttataatttaggacg 8178501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 239
Target Start/End: Complemental strand, 39078076 - 39078016
Alignment:
Q  179 tataatttgggacaaagaaaatgagtgttttttgcttataatttaggacggattgagtata 239  Q
    |||| ||||||||||||||||||||| ||||||||||||| | | |||||||  |||||||    
T  39078076 tatattttgggacaaagaaaatgagttttttttgcttatattgtgggacggagggagtata 39078016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 237
Target Start/End: Complemental strand, 42915448 - 42915390
Alignment:
Q  179 tataatttgggacaaagaaaatgagtgttttttgcttataatttaggacggattgagta 237  Q
    |||| ||||||||||||||||| ||| ||||||||||||| || | ||||||| |||||    
T  42915448 tatattttgggacaaagaaaattagttttttttgcttatatttcaagacggatggagta 42915390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 228
Target Start/End: Original strand, 32012513 - 32012562
Alignment:
Q  179 tataatttgggacaaagaaaatgagtgttttttgcttataatttaggacg 228  Q
    |||| |||| |||||||||||||||  ||||||||||||| |||||||||    
T  32012513 tatattttgagacaaagaaaatgagatttttttgcttatattttaggacg 32012562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 240
Target Start/End: Complemental strand, 32410270 - 32410208
Alignment:
Q  176 gcatataatttgggacaaagaaaatgagtgttttttgcttataatttaggacggattgagtataa 240  Q
    |||||||||||| |||||| ||||||| | |||||  ||||||||||||||||||  ||||||||    
T  32410270 gcatataatttgagacaaaaaaaatgaattttttt--cttataatttaggacggagagagtataa 32410208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 230
Target Start/End: Original strand, 55937899 - 55937940
Alignment:
Q  189 gacaaagaaaatgagtgttttttgcttataatttaggacgga 230  Q
    |||||||||||||||  ||||||||||||| |||||||||||    
T  55937899 gacaaagaaaatgagatttttttgcttatattttaggacgga 55937940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 239
Target Start/End: Complemental strand, 35529590 - 35529530
Alignment:
Q  179 tataatttgggacaaagaaaatgagtgttttttgcttataatttaggacggattgagtata 239  Q
    |||| |||||||||||||||||| || ||||||||||||| | | |||||||  |||||||    
T  35529590 tatattttgggacaaagaaaatgcgttttttttgcttatactatgggacggagggagtata 35529530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 227
Target Start/End: Complemental strand, 49080193 - 49080145
Alignment:
Q  179 tataatttgggacaaagaaaatgagtgttttttgcttataatttaggac 227  Q
    |||||||||||||| ||||||| ||| |||||| | |||||||||||||    
T  49080193 tataatttgggacagagaaaataagttttttttacgtataatttaggac 49080145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 239
Target Start/End: Complemental strand, 52712997 - 52712937
Alignment:
Q  179 tataatttgggacaaagaaaatgagtgttttttgcttataatttaggacggattgagtata 239  Q
    |||| |||| ||||||||| |||||  ||||||||||||| |||||||||||  |||||||    
T  52712997 tatattttgagacaaagaatatgagatttttttgcttatattttaggacggagggagtata 52712937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 230
Target Start/End: Complemental strand, 55580586 - 55580534
Alignment:
Q  179 tataatttgggacaaagaaaatgag-tgttttttgcttataatttaggacgga 230  Q
    |||| |||||||||||||||||||| | ||||||||||||| | |||||||||    
T  55580586 tatattttgggacaaagaaaatgagtttttttttgcttatattataggacgga 55580534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 179 - 230
Target Start/End: Complemental strand, 38401318 - 38401267
Alignment:
Q  179 tataatttgggacaaagaaaatgagtgttttttgcttataatttaggacgga 230  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  38401318 tataatttgggacaaagaaaatgagttttttttgcttataatttaggacgga 38401267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 179 - 230
Target Start/End: Complemental strand, 21214179 - 21214128
Alignment:
Q  179 tataatttgggacaaagaaaatgagtgttttttgcttataatttaggacgga 230  Q
    |||||||||||||||||||||||||| |||||||||||||||||| ||||||    
T  21214179 tataatttgggacaaagaaaatgagttttttttgcttataatttaagacgga 21214128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 179 - 230
Target Start/End: Complemental strand, 10114850 - 10114799
Alignment:
Q  179 tataatttgggacaaagaaaatgagtgttttttgcttataatttaggacgga 230  Q
    ||||||||| |||||||||||||| | |||||||||||||||||||||||||    
T  10114850 tataatttgagacaaagaaaatgaattttttttgcttataatttaggacgga 10114799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 179 - 246
Target Start/End: Complemental strand, 34022559 - 34022492
Alignment:
Q  179 tataatttgggacaaagaaaatgagtgttttttgcttataatttaggacggattgagtataatatacc 246  Q
    |||| |||| |||||||||||||||  ||||||||||||| |||||||||||| |||||| |||||||    
T  34022559 tatattttgagacaaagaaaatgagatttttttgcttatattttaggacggatggagtattatatacc 34022492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 179 - 230
Target Start/End: Original strand, 22456188 - 22456239
Alignment:
Q  179 tataatttgggacaaagaaaatgagtgttttttgcttataatttaggacgga 230  Q
    |||||||||||| ||||||||||||| |||||| |||||||||| |||||||    
T  22456188 tataatttgggataaagaaaatgagttttttttacttataatttgggacgga 22456239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 179 - 230
Target Start/End: Original strand, 22479234 - 22479285
Alignment:
Q  179 tataatttgggacaaagaaaatgagtgttttttgcttataatttaggacgga 230  Q
    |||||||||||||||||||||||| | |||||| |||||||||| |||||||    
T  22479234 tataatttgggacaaagaaaatgaattttttttacttataattttggacgga 22479285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 179 - 222
Target Start/End: Original strand, 54725783 - 54725826
Alignment:
Q  179 tataatttgggacaaagaaaatgagtgttttttgcttataattt 222  Q
    |||||||||||||||||||||||| | |||||||||||||||||    
T  54725783 tataatttgggacaaagaaaatgatttttttttgcttataattt 54725826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 179 - 237
Target Start/End: Original strand, 27876095 - 27876153
Alignment:
Q  179 tataatttgggacaaagaaaatgagtgttttttgcttataatttaggacggattgagta 237  Q
    |||||||| ||| ||||||||||| | |||||| |||||||||||||||||| ||||||    
T  27876095 tataatttaggataaagaaaatgaattttttttacttataatttaggacggagtgagta 27876153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 23209460 - 23209505
Alignment:
Q  179 tataatttgggacaaagaaaatgagtgttttttgcttataatttag 224  Q
    ||||||||  |||||||||||||||| |||||||||||||||||||    
T  23209460 tataatttaagacaaagaaaatgagttttttttgcttataatttag 23209505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 239
Target Start/End: Complemental strand, 10251949 - 10251889
Alignment:
Q  179 tataatttgggacaaagaaaatgagtgttttttgcttataatttaggacggattgagtata 239  Q
    ||||||||| |||||||||||||| | ||||||  |||||||||||||||||  |||||||    
T  10251949 tataatttgagacaaagaaaatgaattttttttagttataatttaggacggagggagtata 10251889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 239
Target Start/End: Complemental strand, 35963074 - 35963014
Alignment:
Q  179 tataatttgggacaaagaaaatgagtgttttttgcttataatttaggacggattgagtata 239  Q
    |||| ||||| ||||||||||||||| ||||||||||||| || ||||||||  |||||||    
T  35963074 tatattttggtacaaagaaaatgagttttttttgcttatatttcaggacggagggagtata 35963014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 239
Target Start/End: Original strand, 36189192 - 36189248
Alignment:
Q  183 atttgggacaaagaaaatgagtgttttttgcttataatttaggacggattgagtata 239  Q
    |||| |||||||||||||| |  |||||||||||||||||||||||||  |||||||    
T  36189192 attttggacaaagaaaatgtgatttttttgcttataatttaggacggagggagtata 36189248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 218
Target Start/End: Original strand, 14752407 - 14752446
Alignment:
Q  179 tataatttgggacaaagaaaatgagtgttttttgcttata 218  Q
    |||| ||||||||||||||||||||| |||||||||||||    
T  14752407 tatattttgggacaaagaaaatgagttttttttgcttata 14752446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 227
Target Start/End: Complemental strand, 26207754 - 26207711
Alignment:
Q  184 tttgggacaaagaaaatgagtgttttttgcttataatttaggac 227  Q
    ||||||||||||||||||||| ||||||||||||| ||| ||||    
T  26207754 tttgggacaaagaaaatgagttttttttgcttatattttgggac 26207711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 238
Target Start/End: Original strand, 29676910 - 29676969
Alignment:
Q  179 tataatttgggacaaagaaaatgagtgttttttgcttataatttaggacggattgagtat 238  Q
    ||||||||||||||||||||||   | ||||||  |||||||||||||||||| ||||||    
T  29676910 tataatttgggacaaagaaaattgatttttttttattataatttaggacggatggagtat 29676969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 238
Target Start/End: Complemental strand, 41935560 - 41935502
Alignment:
Q  179 tataatttgggacaaagaaaatgagtgttttttgcttataatttaggacggattgagtat 238  Q
    |||||||||||||||| ||||||  | |||||| ||||||||||||||||||| ||||||    
T  41935560 tataatttgggacaaaaaaaatgtct-ttttttccttataatttaggacggatggagtat 41935502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 230
Target Start/End: Original strand, 45347850 - 45347901
Alignment:
Q  179 tataatttgggacaaagaaaatgagtgttttttgcttataatttaggacgga 230  Q
    |||| |||| |||||||||||||||  ||||||||||||| |||||||||||    
T  45347850 tatattttgagacaaagaaaatgagatttttttgcttatattttaggacgga 45347901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 230
Target Start/End: Complemental strand, 46819987 - 46819936
Alignment:
Q  179 tataatttgggacaaagaaaatgagtgttttttgcttataatttaggacgga 230  Q
    |||| |||| |||||||||||||||  ||||||||||||| |||||||||||    
T  46819987 tatattttgagacaaagaaaatgagatttttttgcttatattttaggacgga 46819936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 230
Target Start/End: Original strand, 47444156 - 47444207
Alignment:
Q  179 tataatttgggacaaagaaaatgagtgttttttgcttataatttaggacgga 230  Q
    ||||||||||||||||||||||   | ||||||||||||||||| |||||||    
T  47444156 tataatttgggacaaagaaaattgattttttttgcttataatttgggacgga 47444207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 237
Target Start/End: Original strand, 33974758 - 33974816
Alignment:
Q  179 tataatttgggacaaagaaaatgagtgttttttgcttataatttaggacggattgagta 237  Q
    |||| |||| |||||||||||||||  ||||||||||||| | |||||||||| |||||    
T  33974758 tatattttgagacaaagaaaatgagatttttttgcttatattataggacggatggagta 33974816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 220
Target Start/End: Complemental strand, 32070185 - 32070144
Alignment:
Q  179 tataatttgggacaaagaaaatgagtgttttttgcttataat 220  Q
    |||||||||||| ||||||||||||| |||||| ||||||||    
T  32070185 tataatttgggagaaagaaaatgagttttttttacttataat 32070144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 238
Target Start/End: Complemental strand, 6784272 - 6784216
Alignment:
Q  179 tataatttgggacaaagaaaatgagtgttttttgcttataatttaggacggattgagtat 238  Q
    |||||||||||||||  ||||||||| |||||| |||||||||| |||||||| ||||||    
T  6784272 tataatttgggacaa--aaaatgagt-tttttttcttataatttgggacggatggagtat 6784216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 230
Target Start/End: Original strand, 7615099 - 7615153
Alignment:
Q  179 tataatttgggacaaagaaaatgagtgtttttt---gcttataatttaggacgga 230  Q
    |||||||| ||||||||||||||||| ||||||    ||||||||||||||||||    
T  7615099 tataatttaggacaaagaaaatgagttttttttttcccttataatttaggacgga 7615153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 239
Target Start/End: Original strand, 30454905 - 30454964
Alignment:
Q  179 tataatttgggacaaagaaaatgagtgttttttgcttataatttaggacggattgagtata 239  Q
    ||||||||||||||||||||||| || |||||| |||||||||| ||| |||  |||||||    
T  30454905 tataatttgggacaaagaaaatgggt-ttttttccttataatttgggatggaaggagtata 30454964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 179 - 227
Target Start/End: Complemental strand, 41063681 - 41063633
Alignment:
Q  179 tataatttgggacaaagaaaatgagtgttttttgcttataatttaggac 227  Q
    |||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  41063681 tataatttgggacaaataaaatgagttttttttgcttataatttaggac 41063633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 179 - 238
Target Start/End: Complemental strand, 16661455 - 16661397
Alignment:
Q  179 tataatttgggacaaagaaaatgagtgttttttgcttataatttaggacggattgagtat 238  Q
    |||||||||||| ||||||||||||| |||||||||||||||||| ||||||| ||||||    
T  16661455 tataatttgggataaagaaaatgagt-ttttttgcttataatttaagacggatagagtat 16661397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 179 - 227
Target Start/End: Original strand, 5858593 - 5858641
Alignment:
Q  179 tataatttgggacaaagaaaatgagtgttttttgcttataatttaggac 227  Q
    |||||||||||| ||||||||||||| ||||||||||||||||| ||||    
T  5858593 tataatttgggataaagaaaatgagttttttttgcttataatttgggac 5858641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 182 - 230
Target Start/End: Complemental strand, 13291749 - 13291701
Alignment:
Q  182 aatttgggacaaagaaaatgagtgttttttgcttataatttaggacgga 230  Q
    |||||||||||||||||||||   |||||||||||||||||||||||||    
T  13291749 aatttgggacaaagaaaatgaagtttttttgcttataatttaggacgga 13291701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 179 - 230
Target Start/End: Original strand, 45840269 - 45840321
Alignment:
Q  179 tataatttgggacaaagaaaatgag-tgttttttgcttataatttaggacgga 230  Q
    ||||||||||||||||||||||||| | |||||| ||||||||||||||||||    
T  45840269 tataatttgggacaaagaaaatgagtttttttttacttataatttaggacgga 45840321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 179 - 230
Target Start/End: Original strand, 25185550 - 25185601
Alignment:
Q  179 tataatttgggacaaagaaaatgagtgttttttgcttataatttaggacgga 230  Q
    ||||||||||||||||||||||   | |||||||||||||||||||||||||    
T  25185550 tataatttgggacaaagaaaatagtttttttttgcttataatttaggacgga 25185601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 179 - 230
Target Start/End: Original strand, 44512612 - 44512663
Alignment:
Q  179 tataatttgggacaaagaaaatgagtgttttttgcttataatttaggacgga 230  Q
    |||||||||||||||||||||| | | ||||||||||||||| |||||||||    
T  44512612 tataatttgggacaaagaaaattaattttttttgcttataatataggacgga 44512663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 179 - 241
Target Start/End: Original strand, 15959880 - 15959942
Alignment:
Q  179 tataatttgggacaaagaaaatgagtgttttttgcttataatttaggacggattgagtataat 241  Q
    |||| ||||||||||||||||||||| ||||||||||||| | | |||||||  |||||||||    
T  15959880 tatattttgggacaaagaaaatgagttttttttgcttatattatgggacggagggagtataat 15959942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 179 - 224
Target Start/End: Complemental strand, 7397647 - 7397602
Alignment:
Q  179 tataatttgggacaaagaaaatgagtgttttttgcttataatttag 224  Q
    |||||||||||||||||||||||| | |||||| ||||||||||||    
T  7397647 tataatttgggacaaagaaaatgaattttttttacttataatttag 7397602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 231
Target Start/End: Complemental strand, 37538749 - 37538698
Alignment:
Q  179 tataatttgggacaaagaaaatgagtgttttttgcttataatttaggacggat 231  Q
    |||||||||||||||||||||| ||| |||||| |||||||||| ||||||||    
T  37538749 tataatttgggacaaagaaaataagt-ttttttccttataatttgggacggat 37538698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 218
Target Start/End: Complemental strand, 6786758 - 6786719
Alignment:
Q  179 tataatttgggacaaagaaaatgagtgttttttgcttata 218  Q
    |||| ||||||||||||||||||||| |||||||||||||    
T  6786758 tatattttgggacaaagaaaatgagttttttttgcttata 6786719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 222
Target Start/End: Complemental strand, 15912140 - 15912097
Alignment:
Q  179 tataatttgggacaaagaaaatgagtgttttttgcttataattt 222  Q
    |||||||||| |||||||| |||||| |||||||||||||||||    
T  15912140 tataatttggaacaaagaatatgagttttttttgcttataattt 15912097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 218
Target Start/End: Complemental strand, 16854056 - 16854017
Alignment:
Q  179 tataatttgggacaaagaaaatgagtgttttttgcttata 218  Q
    |||| ||||||||||||||||||||| |||||||||||||    
T  16854056 tatattttgggacaaagaaaatgagttttttttgcttata 16854017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 230
Target Start/End: Complemental strand, 29488685 - 29488634
Alignment:
Q  179 tataatttgggacaaagaaaatgagtgttttttgcttataatttaggacgga 230  Q
    |||| |||| |||||||||||||||  ||||||||||||| |||||||||||    
T  29488685 tatattttgagacaaagaaaatgagatttttttgcttatattttaggacgga 29488634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 238
Target Start/End: Original strand, 32624215 - 32624274
Alignment:
Q  179 tataatttgggacaaagaaaatgagtgttttttgcttataatttaggacggattgagtat 238  Q
    |||| |||||||||||||||||| || ||||||||||||| | | |||||||| ||||||    
T  32624215 tatattttgggacaaagaaaatgtgttttttttgcttatattatgggacggatggagtat 32624274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 230
Target Start/End: Original strand, 38942664 - 38942715
Alignment:
Q  179 tataatttgggacaaagaaaatgagtgttttttgcttataatttaggacgga 230  Q
    |||| |||| |||||||||||||||  ||||||||||||| |||||||||||    
T  38942664 tatattttgagacaaagaaaatgagatttttttgcttatattttaggacgga 38942715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 230
Target Start/End: Original strand, 40935836 - 40935887
Alignment:
Q  179 tataatttgggacaaagaaaatgagtgttttttgcttataatttaggacgga 230  Q
    |||| |||| |||||||||||||||  ||||||||||||| |||||||||||    
T  40935836 tatattttgagacaaagaaaatgagatttttttgcttatattttaggacgga 40935887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 230
Target Start/End: Original strand, 40960697 - 40960748
Alignment:
Q  179 tataatttgggacaaagaaaatgagtgttttttgcttataatttaggacgga 230  Q
    |||| |||| |||||||||||||||  ||||||||||||| |||||||||||    
T  40960697 tatattttgagacaaagaaaatgagatttttttgcttatattttaggacgga 40960748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 218
Target Start/End: Complemental strand, 46542902 - 46542863
Alignment:
Q  179 tataatttgggacaaagaaaatgagtgttttttgcttata 218  Q
    |||| ||||||||||||||||||||| |||||||||||||    
T  46542902 tatattttgggacaaagaaaatgagttttttttgcttata 46542863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 230
Target Start/End: Original strand, 47600280 - 47600331
Alignment:
Q  179 tataatttgggacaaagaaaatgagtgttttttgcttataatttaggacgga 230  Q
    |||| ||| ||||||||||||||||| ||||||||||||| | |||||||||    
T  47600280 tatactttcggacaaagaaaatgagttttttttgcttatattataggacgga 47600331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 230
Target Start/End: Complemental strand, 49924356 - 49924305
Alignment:
Q  179 tataatttgggacaaagaaaatgagtgttttttgcttataatttaggacgga 230  Q
    |||| |||| |||||||||||||||  ||||||||||||| |||||||||||    
T  49924356 tatattttgagacaaagaaaatgagatttttttgcttatattttaggacgga 49924305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 218
Target Start/End: Complemental strand, 50665178 - 50665139
Alignment:
Q  179 tataatttgggacaaagaaaatgagtgttttttgcttata 218  Q
    |||| ||||||||||||||||||||| |||||||||||||    
T  50665178 tatattttgggacaaagaaaatgagttttttttgcttata 50665139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 240
Target Start/End: Original strand, 2126219 - 2126253
Alignment:
Q  206 ttttttgcttataatttaggacggattgagtataa 240  Q
    ||||||||||||||||| |||||||||||||||||    
T  2126219 ttttttgcttataatttgggacggattgagtataa 2126253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 206 - 239
Target Start/End: Complemental strand, 32623993 - 32623960
Alignment:
Q  206 ttttttgcttataatttaggacggattgagtata 239  Q
    ||||||||||||||||||||||||| ||||||||    
T  32623993 ttttttgcttataatttaggacggaatgagtata 32623960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 240
Target Start/End: Complemental strand, 46949258 - 46949197
Alignment:
Q  179 tataatttgggacaaagaaaatgagtgttttttgcttataatttaggacggattgagtataa 240  Q
    |||| |||| ||||||||| |||||  ||||||||||||| |||||||||||  ||||||||    
T  46949258 tatattttgagacaaagaatatgagatttttttgcttatattttaggacggagggagtataa 46949197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 215
Target Start/End: Complemental strand, 4672820 - 4672784
Alignment:
Q  179 tataatttgggacaaagaaaatgagtgttttttgctt 215  Q
    |||| ||||||||||||||||||||| ||||||||||    
T  4672820 tatattttgggacaaagaaaatgagttttttttgctt 4672784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 239
Target Start/End: Original strand, 6787231 - 6787291
Alignment:
Q  179 tataatttgggacaaagaaaatgagtgttttttgcttataatttaggacggattgagtata 239  Q
    |||| ||||||| ||||||||||||| ||||||||||||| | | |||||||  |||||||    
T  6787231 tatattttgggataaagaaaatgagttttttttgcttatattatgggacggagggagtata 6787291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 239
Target Start/End: Complemental strand, 25990685 - 25990626
Alignment:
Q  179 tataatttgggacaaagaaaatgagtgttttttgcttataatttaggacggattgagtata 239  Q
    |||| |||| ||||||||| |||||| ||||||||||||| |||||||||||  |||||||    
T  25990685 tatattttgagacaaagaatatgagt-ttttttgcttatattttaggacggagggagtata 25990626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 206 - 242
Target Start/End: Complemental strand, 43667290 - 43667254
Alignment:
Q  206 ttttttgcttataatttaggacggattgagtataata 242  Q
    ||||||| |||||||||||||||||| ||||||||||    
T  43667290 ttttttgtttataatttaggacggatggagtataata 43667254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 211
Target Start/End: Original strand, 46804752 - 46804784
Alignment:
Q  179 tataatttgggacaaagaaaatgagtgtttttt 211  Q
    |||||||||||||||||||||||||| ||||||    
T  46804752 tataatttgggacaaagaaaatgagtttttttt 46804784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 239
Target Start/End: Original strand, 52841668 - 52841728
Alignment:
Q  179 tataatttgggacaaagaaaatgagtgttttttgcttataatttaggacggattgagtata 239  Q
    |||||||||  | ||||||||||||| |||||| |||||||||  |||||||| |||||||    
T  52841668 tataatttgaaataaagaaaatgagttttttttccttataattctggacggatggagtata 52841728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0565 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0565
Description:

Target: scaffold0565; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 179 - 230
Target Start/End: Original strand, 6093 - 6144
Alignment:
Q  179 tataatttgggacaaagaaaatgagtgttttttgcttataatttaggacgga 230  Q
    ||||| |||||||||||||||| ||| |||||||||||||||||||||||||    
T  6093 tataacttgggacaaagaaaataagttttttttgcttataatttaggacgga 6144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 179 - 230
Target Start/End: Complemental strand, 5217330 - 5217279
Alignment:
Q  179 tataatttgggacaaagaaaatgagtgttttttgcttataatttaggacgga 230  Q
    |||||||||| ||||||||||||||| ||||||||||||| |||||||||||    
T  5217330 tataatttggtacaaagaaaatgagttttttttgcttatagtttaggacgga 5217279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 179 - 224
Target Start/End: Complemental strand, 17713161 - 17713116
Alignment:
Q  179 tataatttgggacaaagaaaatgagtgttttttgcttataatttag 224  Q
    |||||||||||||||||||||||||| |||||| ||||||||||||    
T  17713161 tataatttgggacaaagaaaatgagttttttttacttataatttag 17713116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 179 - 237
Target Start/End: Original strand, 24510905 - 24510963
Alignment:
Q  179 tataatttgggacaaagaaaatgagtgttttttgcttataatttaggacggattgagta 237  Q
    |||| ||||||||||||||||||||  ||||||||||||||||| |||| ||| |||||    
T  24510905 tatattttgggacaaagaaaatgagatttttttgcttataatttgggacagatggagta 24510963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 179 - 237
Target Start/End: Complemental strand, 36537998 - 36537940
Alignment:
Q  179 tataatttgggacaaagaaaatgagtgttttttgcttataatttaggacggattgagta 237  Q
    |||| |||| |||||||||||||||  ||||||||||||| |||||||||||| |||||    
T  36537998 tatattttgagacaaagaaaatgagatttttttgcttatattttaggacggatggagta 36537940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 227
Target Start/End: Complemental strand, 41426229 - 41426181
Alignment:
Q  179 tataatttgggacaaagaaaatgagtgttttttgcttataatttaggac 227  Q
    |||| ||||||||||||||||||||  ||||||||||||||||| ||||    
T  41426229 tatattttgggacaaagaaaatgagatttttttgcttataattttggac 41426181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 230
Target Start/End: Original strand, 41791681 - 41791733
Alignment:
Q  179 tataatttgggacaaagaaaatgagtgtttt-ttgcttataatttaggacgga 230  Q
    |||||||| ||||||||||||| ||| |||| |||||||||||||||||||||    
T  41791681 tataatttaggacaaagaaaataagtttttttttgcttataatttaggacgga 41791733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 230
Target Start/End: Complemental strand, 11043997 - 11043946
Alignment:
Q  179 tataatttgggacaaagaaaatgagtgttttttgcttataatttaggacgga 230  Q
    |||| |||| |||||||||||||||  ||||||||||||| |||||||||||    
T  11043997 tatattttgagacaaagaaaatgagatttttttgcttatattttaggacgga 11043946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 230
Target Start/End: Original strand, 24612701 - 24612752
Alignment:
Q  179 tataatttgggacaaagaaaatgagtgttttttgcttataatttaggacgga 230  Q
    |||| |||| |||||||||||||||  ||||||||||||| |||||||||||    
T  24612701 tatattttgagacaaagaaaatgagatttttttgcttatattttaggacgga 24612752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 218
Target Start/End: Original strand, 34890415 - 34890454
Alignment:
Q  179 tataatttgggacaaagaaaatgagtgttttttgcttata 218  Q
    |||| ||||||||||||||||||||| |||||||||||||    
T  34890415 tatattttgggacaaagaaaatgagttttttttgcttata 34890454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 225
Target Start/End: Complemental strand, 17314768 - 17314723
Alignment:
Q  179 tataatttgggacaaagaaaatgagtgttttttgcttataatttagg 225  Q
    |||||||||| ||||||||||||||| |||||| |||||||||||||    
T  17314768 tataatttggaacaaagaaaatgagt-ttttttccttataatttagg 17314723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 211
Target Start/End: Original strand, 8107860 - 8107892
Alignment:
Q  179 tataatttgggacaaagaaaatgagtgtttttt 211  Q
    |||| ||||||||||||||||||||||||||||    
T  8107860 tatattttgggacaaagaaaatgagtgtttttt 8107892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 227
Target Start/End: Original strand, 29147458 - 29147505
Alignment:
Q  179 tataatttgggacaaagaaaatgagtgttttttgcttataatttaggac 227  Q
    |||||||| ||| |||||| |||||| ||||||||||||||||||||||    
T  29147458 tataatttaggataaagaatatgagt-ttttttgcttataatttaggac 29147505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 230
Target Start/End: Original strand, 41362867 - 41362923
Alignment:
Q  179 tataatttgggacaaagaaaatgag-----tgttttttgcttataatttaggacgga 230  Q
    |||||||||||||||||||||| ||     | |||||||||||||||||||||||||    
T  41362867 tataatttgggacaaagaaaataagtttttttttttttgcttataatttaggacgga 41362923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 179 - 238
Target Start/End: Complemental strand, 28907008 - 28906950
Alignment:
Q  179 tataatttgggacaaagaaaatgagtgttttttgcttataatttaggacggattgagtat 238  Q
    |||||||||||| ||||||||||||| |||||||||||||||||| ||||||| ||||||    
T  28907008 tataatttgggataaagaaaatgagt-ttttttgcttataatttaagacggatagagtat 28906950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 179 - 238
Target Start/End: Complemental strand, 28943403 - 28943345
Alignment:
Q  179 tataatttgggacaaagaaaatgagtgttttttgcttataatttaggacggattgagtat 238  Q
    |||||||||||| ||||||||||||| |||||||||||||||||| ||||||| ||||||    
T  28943403 tataatttgggataaagaaaatgagt-ttttttgcttataatttaagacggatagagtat 28943345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 179 - 244
Target Start/End: Complemental strand, 24439511 - 24439446
Alignment:
Q  179 tataatttgggacaaagaaaatgagtgttttttgcttataatttaggacggattgagtataatata 244  Q
    |||| |||| ||||||||||||||   |||||||||||||||||||||||||  |||||| |||||    
T  24439511 tatattttgcgacaaagaaaatgaaatttttttgcttataatttaggacggagagagtattatata 24439446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 230
Target Start/End: Complemental strand, 8146675 - 8146625
Alignment:
Q  179 tataatttgggacaaagaaaatgagtgttttttgcttataatttaggacgga 230  Q
    |||||||||||||||| ||||||||| ||||||| || ||||||||||||||    
T  8146675 tataatttgggacaaaaaaaatgagt-ttttttgtttgtaatttaggacgga 8146625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 238
Target Start/End: Original strand, 30893572 - 30893631
Alignment:
Q  179 tataatttgggacaaagaaaatgagtgttttttgcttataatttaggacggattgagtat 238  Q
    |||||||||||||||| |||| |||| |||| | |||||||||||| |||||| ||||||    
T  30893572 tataatttgggacaaaaaaaaagagttttttcttcttataatttagtacggatggagtat 30893631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 230
Target Start/End: Original strand, 35462938 - 35462989
Alignment:
Q  179 tataatttgggacaaagaaaatgagtgttttttgcttataatttaggacgga 230  Q
    |||| |||| |||||||||||||||  ||||||||||||| |||||||||||    
T  35462938 tatattttgagacaaagaaaatgagatttttttgcttatattttaggacgga 35462989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 218
Target Start/End: Complemental strand, 42273570 - 42273531
Alignment:
Q  179 tataatttgggacaaagaaaatgagtgttttttgcttata 218  Q
    |||| ||||||||||||||||||||| |||||||||||||    
T  42273570 tatattttgggacaaagaaaatgagttttttttgcttata 42273531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 237
Target Start/End: Complemental strand, 25840784 - 25840726
Alignment:
Q  179 tataatttgggacaaagaaaatgagtgttttttgcttataatttaggacggattgagta 237  Q
    |||| |||||||||||||||||| || ||||||||||||| || | ||||||| |||||    
T  25840784 tatattttgggacaaagaaaatgtgttttttttgcttatatttcaagacggatggagta 25840726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 240
Target Start/End: Original strand, 842775 - 842835
Alignment:
Q  179 tataatttgggacaaagaaaatgagtgttttttgcttataatttaggacggattgagtataa 240  Q
    |||| |||||||||||||||||| || ||||||||||||||| ||||| |||  ||||||||    
T  842775 tatattttgggacaaagaaaatgtgt-ttttttgcttataatctaggaaggagggagtataa 842835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 239
Target Start/End: Original strand, 37562971 - 37563031
Alignment:
Q  179 tataatttgggacaaagaaaatgagtgttttttgcttataatttaggacggattgagtata 239  Q
    |||| |||||||| ||||||||| || ||||||||||||| | | |||||||| |||||||    
T  37562971 tatattttgggacgaagaaaatgtgttttttttgcttatattatgggacggatggagtata 37563031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 179 - 239
Target Start/End: Original strand, 13822979 - 13823040
Alignment:
Q  179 tataatttgggacaaagaaaatgag-tgttttttgcttataatttaggacggattgagtata 239  Q
    |||| |||||||||||||||||||| | |||||| ||||||||||||||||||| |||||||    
T  13822979 tatattttgggacaaagaaaatgagattttttttacttataatttaggacggatggagtata 13823040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 179 - 226
Target Start/End: Complemental strand, 32010042 - 32009995
Alignment:
Q  179 tataatttgggacaaagaaaatgagtgttttttgcttataatttagga 226  Q
    |||||||||| ||||||||||||| | |||||||||||||||||||||    
T  32010042 tataatttggaacaaagaaaatgaattttttttgcttataatttagga 32009995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 179 - 230
Target Start/End: Complemental strand, 38070936 - 38070886
Alignment:
Q  179 tataatttgggacaaagaaaatgagtgttttttgcttataatttaggacgga 230  Q
    |||||||||||||||||||||||||| |||||| |||||||||| |||||||    
T  38070936 tataatttgggacaaagaaaatgagt-ttttttccttataatttgggacgga 38070886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 239
Target Start/End: Complemental strand, 21539694 - 21539634
Alignment:
Q  179 tataatttgggacaaagaaaatgagtgttttttgcttataatttaggacggattgagtata 239  Q
    |||| |||| |||||||||||||||  ||||||||||||| |||||||||||  |||||||    
T  21539694 tatattttgagacaaagaaaatgagatttttttgcttatattttaggacggagggagtata 21539634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 239
Target Start/End: Complemental strand, 26998257 - 26998198
Alignment:
Q  179 tataatttgggacaaagaaaatgagtgttttttgcttataatttaggacggattgagtata 239  Q
    |||||||| ||||||||||||||| | |||||||||||||||||| ||||||  |||||||    
T  26998257 tataatttaggacaaagaaaatgaat-ttttttgcttataatttaagacggagggagtata 26998198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 230
Target Start/End: Complemental strand, 9709454 - 9709404
Alignment:
Q  179 tataatttgggacaaagaaaatgagtgttttttgcttataatttaggacgga 230  Q
    |||||||||||||||||||||||  | ||||||||||||||||| |||||||    
T  9709454 tataatttgggacaaagaaaatg-tttttttttgcttataatttgggacgga 9709404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 230
Target Start/End: Complemental strand, 15068683 - 15068632
Alignment:
Q  179 tataatttgggacaaagaaaatgagtgttttttgcttataatttaggacgga 230  Q
    |||| |||| |||||||||||||| | |||||||||||||||||| ||||||    
T  15068683 tatattttgagacaaagaaaatgaattttttttgcttataatttaagacgga 15068632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 218
Target Start/End: Complemental strand, 19264020 - 19263981
Alignment:
Q  179 tataatttgggacaaagaaaatgagtgttttttgcttata 218  Q
    |||| ||||||||||||||||||||| |||||||||||||    
T  19264020 tatattttgggacaaagaaaatgagttttttttgcttata 19263981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 218
Target Start/End: Original strand, 33198874 - 33198913
Alignment:
Q  179 tataatttgggacaaagaaaatgagtgttttttgcttata 218  Q
    |||| ||||||||||||||||||||| |||||||||||||    
T  33198874 tatattttgggacaaagaaaatgagttttttttgcttata 33198913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 239
Target Start/End: Complemental strand, 44442073 - 44442011
Alignment:
Q  179 tataatttgggacaaagaaaatgag--tgttttttgcttataatttaggacggattgagtata 239  Q
    |||||||||||||||||||||||||  | ||||||  |||||||||||||||||  |||||||    
T  44442073 tataatttgggacaaagaaaatgagtttattttttatttataatttaggacggagggagtata 44442011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 240
Target Start/End: Original strand, 6110409 - 6110470
Alignment:
Q  179 tataatttgggacaaagaaaatgagtgttttttgcttataatttaggacggattgagtataa 240  Q
    |||| |||||||||||||||||| || ||||||||||||| | | |||||||  ||||||||    
T  6110409 tatattttgggacaaagaaaatgtgttttttttgcttatattatgggacggagggagtataa 6110470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 206 - 238
Target Start/End: Original strand, 4891850 - 4891882
Alignment:
Q  206 ttttttgcttataatttaggacggattgagtat 238  Q
    |||||||||||||||||||||||||| ||||||    
T  4891850 ttttttgcttataatttaggacggatggagtat 4891882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 239
Target Start/End: Original strand, 29514693 - 29514753
Alignment:
Q  179 tataatttgggacaaagaaaatgagtgttttttgcttataatttaggacggattgagtata 239  Q
    |||| |||| ||||||||| |||||  ||||||||||||| |||||||||||  |||||||    
T  29514693 tatattttgagacaaagaatatgagatttttttgcttatattttaggacggagcgagtata 29514753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 179 - 239
Target Start/End: Original strand, 22624034 - 22624094
Alignment:
Q  179 tataatttgggacaaagaaaatgagtgttttttgcttataatttaggacggattgagtata 239  Q
    |||||||||||||||||||||||||| |||| |||||||||||| ||| |||  |||||||    
T  22624034 tataatttgggacaaagaaaatgagttttttatgcttataatttgggatggagggagtata 22624094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 218
Target Start/End: Complemental strand, 6190966 - 6190927
Alignment:
Q  179 tataatttgggacaaagaaaatgagtgttttttgcttata 218  Q
    |||| ||||||||||||||||||||| |||||||||||||    
T  6190966 tatattttgggacaaagaaaatgagttttttttgcttata 6190927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 222
Target Start/End: Complemental strand, 30082300 - 30082257
Alignment:
Q  179 tataatttgggacaaagaaaatgagtgttttttgcttataattt 222  Q
    |||| ||||||||||||||||||||  |||||||||||||||||    
T  30082300 tatattttgggacaaagaaaatgagatttttttgcttataattt 30082257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 230
Target Start/End: Original strand, 41815871 - 41815922
Alignment:
Q  179 tataatttgggacaaagaaaatgagtgttttttgcttataatttaggacgga 230  Q
    |||| |||| |||||||||||||||  ||||||||||||| |||||||||||    
T  41815871 tatattttgagacaaagaaaatgagatttttttgcttatattttaggacgga 41815922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 230
Target Start/End: Complemental strand, 44600382 - 44600331
Alignment:
Q  179 tataatttgggacaaagaaaatgagtgttttttgcttataatttaggacgga 230  Q
    |||| |||| |||||||||||||||  ||||||||||||| |||||||||||    
T  44600382 tatattttgagacaaagaaaatgagatttttttgcttatattttaggacgga 44600331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 218
Target Start/End: Complemental strand, 47778693 - 47778654
Alignment:
Q  179 tataatttgggacaaagaaaatgagtgttttttgcttata 218  Q
    |||| ||||||||||||||||||||| |||||||||||||    
T  47778693 tatattttgggacaaagaaaatgagttttttttgcttata 47778654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 239
Target Start/End: Complemental strand, 25944497 - 25944437
Alignment:
Q  179 tataatttgggacaaagaaaatgagtgttttttgcttataatttaggacggattgagtata 239  Q
    |||| ||||||||||||||||||| | ||||||||||||| | | |||||||  |||||||    
T  25944497 tatattttgggacaaagaaaatgaattttttttgcttatattatgggacggagggagtata 25944437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 241
Target Start/End: Complemental strand, 35181118 - 35181066
Alignment:
Q  189 gacaaagaaaatgagtgttttttgcttataatttaggacggattgagtataat 241  Q
    ||||||||| |||||  ||||||||||||| |||||||||||  |||||||||    
T  35181118 gacaaagaatatgagatttttttgcttatattttaggacggagggagtataat 35181066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 211
Target Start/End: Complemental strand, 38260255 - 38260223
Alignment:
Q  179 tataatttgggacaaagaaaatgagtgtttttt 211  Q
    |||||||||||||||||||||||||| ||||||    
T  38260255 tataatttgggacaaagaaaatgagtttttttt 38260223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 239
Target Start/End: Original strand, 41890438 - 41890498
Alignment:
Q  179 tataatttgggacaaagaaaatgagtgttttttgcttataatttaggacggattgagtata 239  Q
    |||| |||| ||||||||| |||||  ||||||||||||| |||||||||||  |||||||    
T  41890438 tatattttgagacaaagaatatgagatttttttgcttatattttaggacggaaggagtata 41890498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 179 - 230
Target Start/End: Complemental strand, 4987881 - 4987830
Alignment:
Q  179 tataatttgggacaaagaaaatgagtgttttttgcttataatttaggacgga 230  Q
    ||||||||||||||||||||||  || |||||| ||||||||||||||||||    
T  4987881 tataatttgggacaaagaaaataggttttttttacttataatttaggacgga 4987830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 179 - 222
Target Start/End: Original strand, 5300813 - 5300856
Alignment:
Q  179 tataatttgggacaaagaaaatgagtgttttttgcttataattt 222  Q
    |||||||||||||||||||||||| | |||||||||||||||||    
T  5300813 tataatttgggacaaagaaaatgaattttttttgcttataattt 5300856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 179 - 230
Target Start/End: Original strand, 5822242 - 5822292
Alignment:
Q  179 tataatttgggacaaagaaaatgagtgttttttgcttataatttaggacgga 230  Q
    |||||||||||||| ||||||||||| ||||||||||||||||| |||||||    
T  5822242 tataatttgggacagagaaaatgagt-ttttttgcttataatttgggacgga 5822292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 179 - 230
Target Start/End: Original strand, 5881973 - 5882023
Alignment:
Q  179 tataatttgggacaaagaaaatgagtgttttttgcttataatttaggacgga 230  Q
    |||||||||||||| ||||||||||| ||||||||||||||||| |||||||    
T  5881973 tataatttgggacagagaaaatgagt-ttttttgcttataatttgggacgga 5882023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 239
Target Start/End: Original strand, 31887342 - 31887402
Alignment:
Q  179 tataatttgggacaaagaaaatgagtgttttttgcttataatttaggacggattgagtata 239  Q
    ||||||||| ||||||||||||||   ||||||||||||| |||||||||||  |||||||    
T  31887342 tataatttgagacaaagaaaatgatatttttttgcttatattttaggacggagggagtata 31887402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 230
Target Start/End: Complemental strand, 4031925 - 4031874
Alignment:
Q  179 tataatttgggacaaagaaaatgagtgttttttgcttataatttaggacgga 230  Q
    ||||||||| || ||||||||||||| |||||| ||||||||||| ||||||    
T  4031925 tataatttgagataaagaaaatgagttttttttacttataatttaagacgga 4031874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 230
Target Start/End: Original strand, 16013612 - 16013664
Alignment:
Q  180 ataatttgggacaaagaaaatgagtgtt--ttttgcttataatttaggacgga 230  Q
    |||||||| |||||||||||||||| ||  |||| ||||||||||||||||||    
T  16013612 ataatttgagacaaagaaaatgagttttaattttccttataatttaggacgga 16013664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 211
Target Start/End: Complemental strand, 1130457 - 1130425
Alignment:
Q  179 tataatttgggacaaagaaaatgagtgtttttt 211  Q
    |||||||||||||||||||||||||| ||||||    
T  1130457 tataatttgggacaaagaaaatgagtttttttt 1130425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0330 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 239
Target Start/End: Complemental strand, 3108 - 3048
Alignment:
Q  179 tataatttgggacaaagaaaatgagtgttttttgcttataatttaggacggattgagtata 239  Q
    |||||||| ||| ||||||||||  | |||||||||||||||||||||||||  |||||||    
T  3108 tataatttaggataaagaaaatggattttttttgcttataatttaggacggagggagtata 3048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University