View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4193_low_58 (Length: 249)
Name: NF4193_low_58
Description: NF4193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4193_low_58 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 35 - 239
Target Start/End: Complemental strand, 45913511 - 45913309
Alignment:
| Q |
35 |
atatgacaataacaaagtggtataataaacagaagacaaatgacaaattttcactatttagaataaatgaatttgtgtaatttttattttaaaaatagta |
134 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |
|
|
| T |
45913511 |
atatgacaataacaaagtggta--ataaacagaagacaaatgacaaattttcactatttagaataaatgaatttctgaaatttttattttaaaaatagta |
45913414 |
T |
|
| Q |
135 |
atagtataaaagttgtttgcatttgttcaatagggtagaatggagtcaaattacatgtcataacatccattttttaaatgtacctagattattattccac |
234 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45913413 |
atagtataaaagttgtttgcattagttctatagggtagaatggagtcaaattacatgtcataacatccattttttaaatgtacctagattattattccac |
45913314 |
T |
|
| Q |
235 |
ttcat |
239 |
Q |
| |
|
||||| |
|
|
| T |
45913313 |
ttcat |
45913309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University