View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4193_low_6 (Length: 586)
Name: NF4193_low_6
Description: NF4193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4193_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 170 - 575
Target Start/End: Original strand, 34723760 - 34724149
Alignment:
| Q |
170 |
cgctagtaatgtaagaggcggnnnnnnngtgcttggcgcttcttcacttgaataatcattcctgctcatcttactccaccttcactgcaatggctgctca |
269 |
Q |
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| T |
34723760 |
cgctagtaatgtaagaggcagtttttttgtgcttggcgcttcttcacttgaataatcattcctgctcatcttactccaccttcactgcaatggctgctca |
34723859 |
T |
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| Q |
270 |
cgcaaaggacgaagcgcacctaaacgcaacaatcctgaaacacatccgtttatttgaggctattcatttagagctacagactcgtcagctatctctgtcg |
369 |
Q |
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| T |
34723860 |
cgcaaaggacgaagcgcacctaaacgcaacaatcccgaaacacatccgtttatttgaggctattcatttagagctacagactcgtcagctatctctgtcg |
34723959 |
T |
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| Q |
370 |
catgatccaataaaggtaacacctttgcatgttgctcgttcttttttgttatcgttcnnnnnnngtttcctgagaatttggattataatgataatgataa |
469 |
Q |
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| T |
34723960 |
catgatccaataaaggtaacacctttgcatgttgctcgttctttttt----------------tgtttcctgagaatttggattataatgataatgataa |
34724043 |
T |
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| Q |
470 |
tatggtgtttattttctgtagtctcctgggacgaagcatggatgcaagctttgcattggaccctgcactaccacagaaaacgaatgtgccttgtttgttg |
569 |
Q |
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| T |
34724044 |
tatggtgtttgttttatgtagtctcctgggacgaagcatggatgcaagctttgcattggaccctgcactaccacagaaaacgtatgtgccttgtttgttg |
34724143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 34723591 - 34723689
Alignment:
| Q |
1 |
cttttcggaaaggaatttacccacgagtagaactcatgcatttgccacgatgtagaggtgagtttatccatttgaagtcatcttaaagcccaaaaccga |
99 |
Q |
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| T |
34723591 |
cttttcggaaaggaatttacccacgagtagaactcatgcatttgccacgatgtagaggtgagtttatccatttgaagtcatcttaaagcccaaaaccga |
34723689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 486 - 537
Target Start/End: Original strand, 15121140 - 15121191
Alignment:
| Q |
486 |
tgtagtctcctgggacgaagcatggatgcaagctttgcattggaccctgcac |
537 |
Q |
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| T |
15121140 |
tgtagtctcttgagacggagtatggatgcaagctttgcattggaccctgcac |
15121191 |
T |
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