View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4193_low_62 (Length: 243)
Name: NF4193_low_62
Description: NF4193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4193_low_62 |
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Alignment Details
Target: chr4 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 22 - 228
Target Start/End: Complemental strand, 48398431 - 48398225
Alignment:
| Q |
22 |
cttgcatattataaaagcaaaaggctaacatcgaaccttacaaaggnnnnnnnttaaaccttaaaataactcgaagaacacaatcgactgcccttaaatg |
121 |
Q |
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|||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
48398431 |
cttgcatattataaaagcaaaaagctaacatcgaaccctacaaaggaaaaaaactaaaccttaaaataactcgaagaacccaatcgactgcccttaaatg |
48398332 |
T |
|
| Q |
122 |
aaactcagcattcttctacatgatacctaatgggtaggaaaacagacaagttaggctttccgaaatacaacacgcctttctcgcttgtactctacttcgt |
221 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48398331 |
aaactcagcattcttctacatgatacctaatgggtgggaaaacagacaagttaggctttccgaaatacaacacgcctttctcgcttgtactctacttcgt |
48398232 |
T |
|
| Q |
222 |
ctctctg |
228 |
Q |
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||||||| |
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| T |
48398231 |
ctctctg |
48398225 |
T |
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