View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4193_low_66 (Length: 238)
Name: NF4193_low_66
Description: NF4193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4193_low_66 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 34723391 - 34723610
Alignment:
| Q |
18 |
ctaaacaggttgggtatcccatcttcacagctttaaacacacaaatccacatacaaatacactatgctatactctctaatctgtttgcgcttgatgtagg |
117 |
Q |
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| T |
34723391 |
ctaaacaggttgggtatcccatcttcagagctttaaacacacaaatccacatacaaatacactatgctatactctctaatccgtttgcgcttgatgtagg |
34723490 |
T |
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| Q |
118 |
cagaattggccgtgcgtattgaagatgaagtggcgcggaagaaaggtttaataagaacagtgtagatttgagatctagtgtctaattgacttgaaatata |
217 |
Q |
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| T |
34723491 |
cag-actggctgcgcgtattgaagatgaagtggcgcgaaagaaaggtttaataagaagagtgtagatttgagatctagtgtctgattgacttgaaatata |
34723589 |
T |
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| Q |
218 |
ccttttcggaaaggaatttac |
238 |
Q |
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| T |
34723590 |
ccttttcggaaaggaatttac |
34723610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 132 - 233
Target Start/End: Original strand, 18490167 - 18490268
Alignment:
| Q |
132 |
cgtattgaagatgaagtggcgcggaagaaaggtttaataagaacagtgtagatttgagatctagtgtctaattgacttgaaatataccttttcggaaagg |
231 |
Q |
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| T |
18490167 |
cgtattgaagatgaaatgacgcgcaagaaatgttcaatgggaatagtacagatttgatatctagtgtctaattgactcaaattataccttttcggaatgg |
18490266 |
T |
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| Q |
232 |
aa |
233 |
Q |
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| T |
18490267 |
aa |
18490268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 132 - 230
Target Start/End: Original strand, 28287353 - 28287451
Alignment:
| Q |
132 |
cgtattgaagatgaagtggcgcggaagaaaggtttaataagaacagtgtagatttgagatctagtgtctaattgacttgaaatataccttttcggaaag |
230 |
Q |
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| T |
28287353 |
cgtattgaagatgaagttgcgcgcaagaaatgttcaatgaaaatggtgcagatttgatatctggtgtctgattgattcgaattatacattttcggaaag |
28287451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 132 - 230
Target Start/End: Original strand, 2262371 - 2262469
Alignment:
| Q |
132 |
cgtattgaagatgaagtggcgcggaagaaaggtttaataagaacagtgtagatttgagatctagtgtctaattgacttgaaatataccttttcggaaag |
230 |
Q |
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| T |
2262371 |
cgtattgaagatgaagtggcgcgtaacaaaagttcaatgagaataatgcagatttggcatctagtgtcggattgactcgaattatacctttttggaaag |
2262469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 133 - 231
Target Start/End: Complemental strand, 29019588 - 29019490
Alignment:
| Q |
133 |
gtattgaagatgaagtggcgcggaagaaaggtttaataagaacagtgtagatttgagatctagtgtctaattgacttgaaatataccttttcggaaagg |
231 |
Q |
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| T |
29019588 |
gtattgaagatgaagtgtcatgcaaaaaaagtttaatgagaatagtgcagatttgacatctgttgtccgaatgacttgaaatatacctttttggaaagg |
29019490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 165
Target Start/End: Original strand, 10779517 - 10779551
Alignment:
| Q |
131 |
gcgtattgaagatgaagtggcgcggaagaaaggtt |
165 |
Q |
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| T |
10779517 |
gcgtattgaagatgaagtggcgcgcaagaaaggtt |
10779551 |
T |
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