View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4194_high_2 (Length: 416)

Name: NF4194_high_2
Description: NF4194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4194_high_2
NF4194_high_2
[»] chr6 (2 HSPs)
chr6 (20-400)||(33050989-33051371)
chr6 (91-209)||(33032816-33032936)
[»] chr4 (2 HSPs)
chr4 (118-212)||(8264038-8264132)
chr4 (118-212)||(8277456-8277550)
[»] chr1 (1 HSPs)
chr1 (139-209)||(9901029-9901098)
[»] chr7 (1 HSPs)
chr7 (124-209)||(7975171-7975255)
[»] chr5 (1 HSPs)
chr5 (124-209)||(13838155-13838239)
[»] chr2 (1 HSPs)
chr2 (124-209)||(26543712-26543796)
[»] chr3 (1 HSPs)
chr3 (124-203)||(1293814-1293892)


Alignment Details
Target: chr6 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 20 - 400
Target Start/End: Original strand, 33050989 - 33051371
Alignment:
Q  20 ggttcaaacttgtgtgttatgtacggtgtatcaatgttgcattgtcctatagttttttctcagattttttctcaattacatgttactttgaaatgtattt 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33050989 ggttcaaacttgtgtgttatgtacggtgtatcaatgttgcattgtcctatagttttttctcagattttttctcaattacatgttactttgaaatgtattt 33051088  T
Q  120 tatgggctgtgatgagtcatagagatagtcatgcaccactctgatgtttcaatgctgataattttctcatacccaatatttttctgagcccttcattatc 219  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33051089 tatgggctgtgatgagtcatagagatagtcatgcaccactctcatgtttcaatgctgataattttctcatacccaatatttttctgagcccttcattatc 33051188  T
Q  220 acaccctttgagtttttgcagctatatctaatt--tatactttttatttctttgagaaaatgctaatgacagtggtgatggtattgatccaagaaatttg 317  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  33051189 acaccctttgagtttttgcagctatatctaatttatatactttttatttctttgagaaaatgttaatgacagtggtgatggtattgatccaagaaatttg 33051288  T
Q  318 gacgattctaaatgaaaaatatcctttgtaaagaggtctaaaaataaattttgtataagtgttacaactaattagaactttta 400  Q
    || ||||||||||||||||| ||| || ||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||    
T  33051289 gatgattctaaatgaaaaatttccattttaaagaggtttaaaaataaattttgtatacgtgttacaactaactagaactttta 33051371  T

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Target: chr6; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 91 - 209
Target Start/End: Original strand, 33032816 - 33032936
Alignment:
Q  91 tcaattacatgttactttgaaat--gtattttatgggctgtgatgagtcatagagatagtcatgcaccactctgatgtttcaatgctgataattttctca 188  Q
    |||||||||| ||||| |||| |  ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  33032816 tcaattacatattactctgaattttgtattttattggctatgatgagtcatagagatagtcatgcaccactctgatgtttccgtgctgataattttctca 33032915  T
Q  189 tacccaatatttttctgagcc 209  Q
    |||||| ||||||||||||||    
T  33032916 tacccattatttttctgagcc 33032936  T

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Target: chr4 (Bit Score: 71; Significance: 5e-32; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 118 - 212
Target Start/End: Original strand, 8264038 - 8264132
Alignment:
Q  118 tttatgggctgtgatgagtcatagagatagtcatgcaccactctgatgtttcaatgctgataattttctcatacccaatatttttctgagccctt 212  Q
    |||||||||| |||||| ||||||||||||||||||||||||||||| || || ||||||||||||||||||||||| |||||||||||||||||    
T  8264038 tttatgggctatgatgaatcatagagatagtcatgcaccactctgatattccagtgctgataattttctcatacccattatttttctgagccctt 8264132  T

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Target: chr4; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 118 - 212
Target Start/End: Original strand, 8277456 - 8277550
Alignment:
Q  118 tttatgggctgtgatgagtcatagagatagtcatgcaccactctgatgtttcaatgctgataattttctcatacccaatatttttctgagccctt 212  Q
    |||||||||| |||||| ||||||||||||||||||||||||||||| || || ||||||||||||||||||||||| |||||||||||||||||    
T  8277456 tttatgggctatgatgaatcatagagatagtcatgcaccactctgatattccagtgctgataattttctcatacccattatttttctgagccctt 8277550  T

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Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 139 - 209
Target Start/End: Complemental strand, 9901098 - 9901029
Alignment:
Q  139 tagagatagtcatgcaccactctgatgtttcaatgctgataattttctcatacccaatatttttctgagcc 209  Q
    |||||||||||||||||||||||||| || |  ||||||||||||||||||||||| ||||||||||||||    
T  9901098 tagagatagtcatgcaccactctgat-ttcctgtgctgataattttctcatacccattatttttctgagcc 9901029  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 124 - 209
Target Start/End: Original strand, 7975171 - 7975255
Alignment:
Q  124 ggctgtgatgagtcatagagatagtcatgcaccactctgatgtttcaatgctgataattttctcatacccaatatttttctgagcc 209  Q
    |||| |||||| |||||||||||||||||||||||| |||| || |  ||||||||| ||||| ||||||| |||||||| |||||    
T  7975171 ggctatgatgaatcatagagatagtcatgcaccactttgat-ttcctgtgctgataactttcttatacccattatttttcagagcc 7975255  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 124 - 209
Target Start/End: Complemental strand, 13838239 - 13838155
Alignment:
Q  124 ggctgtgatgagtcatagagatagtcatgcaccactctgatgtttcaatgctgataattttctcatacccaatatttttctgagcc 209  Q
    |||| |||||| |||||||||||||||||||||||| |||| || |  ||||||||| ||||| ||||||| |||||||| |||||    
T  13838239 ggctatgatgaatcatagagatagtcatgcaccactttgat-ttcctgtgctgataactttcttatacccattatttttcagagcc 13838155  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 124 - 209
Target Start/End: Complemental strand, 26543796 - 26543712
Alignment:
Q  124 ggctgtgatgagtcatagagatagtcatgcaccactctgatgtttcaatgctgataattttctcatacccaatatttttctgagcc 209  Q
    |||| |||||| |||||||||||||||||||||||| |||| || |  ||||||||| ||||| ||||||| |||||||| |||||    
T  26543796 ggctatgatgaatcatagagatagtcatgcaccactttgat-ttcctgtgctgataactttcttatacccattatttttcagagcc 26543712  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 124 - 203
Target Start/End: Complemental strand, 1293892 - 1293814
Alignment:
Q  124 ggctgtgatgagtcatagagatagtcatgcaccactctgatgtttcaatgctgataattttctcatacccaatatttttc 203  Q
    |||| |||||| |||||||||||||||||||||||| |||| || |  ||||||||| ||||| ||||||| ||||||||    
T  1293892 ggctatgatgaatcatagagatagtcatgcaccactttgat-ttcctgtgctgataactttcttatacccattatttttc 1293814  T

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