View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4194_high_9 (Length: 236)
Name: NF4194_high_9
Description: NF4194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4194_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 7660713 - 7660493
Alignment:
| Q |
1 |
tagtatgcattatttgtagcacaagttatcaattccctcacaaatttaatctaaagccacctaagacacagttattgaatagtaatatccataattctat |
100 |
Q |
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| T |
7660713 |
tagtatgcattatttgtagcacaagttatcaattccctcacaaatttaatctaaagccacctaagacacagttattgaatagtaatatctataattctat |
7660614 |
T |
|
| Q |
101 |
atagtagttgaccatcacttccttcataaaaggaatatatcatgtaatgtgctgtaactaaataaatactatattatcattaacatttccgaaccaatag |
200 |
Q |
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| T |
7660613 |
atagtagttgaccatcacttccttcataaaaggaatatatcatgtaatgtgctgtaactaagtaaatactatattatcattaacatttccgaaccaatag |
7660514 |
T |
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| Q |
201 |
aaccagcattcttaaccaaac |
221 |
Q |
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| T |
7660513 |
aaccagcattcttaaccaaac |
7660493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 125
Target Start/End: Complemental strand, 7663154 - 7663125
Alignment:
| Q |
96 |
tctatatagtagttgaccatcacttccttc |
125 |
Q |
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| T |
7663154 |
tctatatagtagttgaccatcacttccttc |
7663125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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