View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4194_low_1 (Length: 712)
Name: NF4194_low_1
Description: NF4194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4194_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 419; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 263 - 697
Target Start/End: Complemental strand, 11681253 - 11680820
Alignment:
| Q |
263 |
catctcgtagaacatacatagagaagacttcaacctagacaactccatttccaggaaaggactttgacctcttccatcaattcctcaacatctatcccct |
362 |
Q |
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| T |
11681253 |
catctcgtagaacatacatagagaagacttcaacctagacaactccatttccaggaaaggactttgacctcttccatcaattcctcaacatctatcccct |
11681154 |
T |
|
| Q |
363 |
tatcataagaaaaatcattccatttcgcgcctttcatatagccgcatgcgaaataagccaatagcctttttccaatttcttttaaggacaccatccaaca |
462 |
Q |
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| T |
11681153 |
tatcataa-aaaaatcattccatttcgcgcctttcatatagccgcatgccaaataagccaatagcctttttccaatttcttttaaggacaccatccaaca |
11681055 |
T |
|
| Q |
463 |
aatactcagtttgaatcaatgagttcagtggtgtgatgagattgacccttaactaagagaatcatttcgcccacaataaggcagtaaccggctagtgcag |
562 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11681054 |
aatactcagtttgaatcaatgagttcagtggtgtgatgagattgacccttaactaagagaatcatttcgcccacaataaggcagtaaccggctagtgcag |
11680955 |
T |
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| Q |
563 |
gaaaaggtgaagggcagtctcctctccattggttcaaaaaacacattcaactgcaacctcaagatcgaaacaaataaacgtttatccctgccatgactaa |
662 |
Q |
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| T |
11680954 |
gaaaaggtgaagggcagtctcctctccattggttcaaaaaacacattcatctgcaacctcaagatcgaaacaaataaacgtttatccctgccatgactaa |
11680855 |
T |
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| Q |
663 |
attctaaccaagataaaagatctaccgataatttt |
697 |
Q |
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| T |
11680854 |
attctaaccaagataaaagatctaccgataatttt |
11680820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 21 - 252
Target Start/End: Complemental strand, 11681538 - 11681305
Alignment:
| Q |
21 |
aattaaatcggacaagaaggtcaaaacaagttaaaaagactcggcaacaacagcggtaaaactggtgcgaagaaac--ggaccagcacaccaaaacagaa |
118 |
Q |
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|||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
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| T |
11681538 |
aattaaatagtacaagaaggccaaaacaagttaaaaagactcggcaacaacagcggtaaaactggtgcgaagaaacaggggccagcacaccaaaacagaa |
11681439 |
T |
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| Q |
119 |
cagcaagcctaaactgctaaaacatcaaagacaaacagtgaaaaccccagcaaaaccagcacaaaccgcagcatctcagcaaaaggtccatgcacccttc |
218 |
Q |
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| T |
11681438 |
cagcaagcctaaactgctaaaacatcaaagacaaacagtcaaaaacccagcaaaactagcacaaaccgcagcatcacagcaaaaggtccatgcacccttc |
11681339 |
T |
|
| Q |
219 |
agagacagctgaaccaaaacacaaagctacgact |
252 |
Q |
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| T |
11681338 |
agagacagctgaaccaaaacacaaagctacgact |
11681305 |
T |
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