View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4194_low_3 (Length: 369)
Name: NF4194_low_3
Description: NF4194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4194_low_3 |
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| [»] scaffold1432 (1 HSPs) |
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| [»] scaffold0236 (1 HSPs) |
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Alignment Details
Target: scaffold1432 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: scaffold1432
Description:
Target: scaffold1432; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 1349 - 1645
Alignment:
| Q |
1 |
atagagaagtgtcgtatacatggaatggcaacttgaaacgccgccaacgtacactagatttcgaagagaatggaagagcagagattgagaaaggataggg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| || ||||||||||||||||||||||||||| ||||||||| |
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| T |
1349 |
atagagaagtgtcgtatacatggaatggcaacttgaaaaggcgccaacgtacactagatgtcaaagagaatggaagagcagagattgagagaggataggg |
1448 |
T |
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| Q |
101 |
ttcggttatttttattgttagaaattttacttgtaaggccaagaggatgctgaatttagctaaagccgctataatccaattactcaaaatactgtactac |
200 |
Q |
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| T |
1449 |
ttcggttatttttattgtttgaaattttacttgtaaggccaagaggatgctgaatttagctaaagccgctataatccaattactcaaaatactgtactac |
1548 |
T |
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| Q |
201 |
taaaccaagtcactttcaaataccaaacacacccgatacaaactactaaaataaagcaaagcaaaataacaaggaaatcataaaatcaccaacaatg |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |
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| T |
1549 |
taaaccaagtcactttcaaataccaaacacacccgatacaaactactaaaataaagcaaagcaaaataacaaggaaatcataaattcaccaaaaatg |
1645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0236 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: scaffold0236
Description:
Target: scaffold0236; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 348
Target Start/End: Complemental strand, 22024 - 21682
Alignment:
| Q |
1 |
atagagaagtgtcgtatacatggaatggcaacttgaaacgccgccaacgtacactagatttcgaagagaatggaagagcagagattgagaaaggataggg |
100 |
Q |
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||||||||||||||| ||||||||||||||||||||| | | | |||||||||||||| ||| ||| ||||||||| ||||||||||||||| ||||| |
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| T |
22024 |
atagagaagtgtcgtgcacatggaatggcaacttgaaaaggcactaacgtacactagatgtcgtagaaaatggaagatcagagattgagaaagactaggg |
21925 |
T |
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| Q |
101 |
ttcggttatttttattgttagaaattttacttgtaaggccaagaggatgctgaatttagctaaagccgctataatccaattactcaaaatactgtactac |
200 |
Q |
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| T |
21924 |
ttcagttatttttattgtttgaaattttacttgtaaggccaagaggatggtgaatttagctaaagccgctataatccaattactcaaaatact-----ag |
21830 |
T |
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| Q |
201 |
taaaccaagtcactttcaaataccaaacacacccgatacaaactactaaaataaagcaaagcaaaataacaaggaaatcataaaatcaccaacaatgaca |
300 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21829 |
taaaccaaatcactttcaaataccaaacacacccgatacaaactactaaaataaagcaaagcaaaataacaaggaaatcataaaatcaccaacaatgaca |
21730 |
T |
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| Q |
301 |
ttagatctggaatcggatattgatggggtaagaaaaacatggtcttga |
348 |
Q |
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|||||||| |||||||||| ||||||| ||||||||||||| |||||| |
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| T |
21729 |
ttagatcttgaatcggataatgatgggttaagaaaaacatgatcttga |
21682 |
T |
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