View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4194_low_4 (Length: 352)

Name: NF4194_low_4
Description: NF4194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4194_low_4
NF4194_low_4
[»] chr8 (20 HSPs)
chr8 (133-328)||(23488724-23488919)
chr8 (98-336)||(5074381-5074620)
chr8 (50-239)||(23488923-23489111)
chr8 (95-328)||(11732590-11732824)
chr8 (121-328)||(38225455-38225663)
chr8 (94-328)||(42950337-42950572)
chr8 (101-328)||(42026946-42027174)
chr8 (98-288)||(16997093-16997286)
chr8 (216-336)||(41480624-41480745)
chr8 (152-328)||(18385779-18385954)
chr8 (98-237)||(41480735-41480875)
chr8 (98-225)||(7905633-7905760)
chr8 (98-223)||(34153454-34153578)
chr8 (98-225)||(42950583-42950710)
chr8 (173-336)||(42373332-42373496)
chr8 (245-328)||(34153358-34153441)
chr8 (121-207)||(42027203-42027289)
chr8 (122-223)||(38225676-38225777)
chr8 (123-237)||(5074277-5074391)
chr8 (121-236)||(23488610-23488726)
[»] chr2 (10 HSPs)
chr2 (124-336)||(29469541-29469756)
chr2 (99-328)||(36937640-36937870)
chr2 (117-336)||(26407420-26407640)
chr2 (134-328)||(29166738-29166935)
chr2 (98-237)||(36937504-36937642)
chr2 (98-237)||(26407630-26407770)
chr2 (152-298)||(25961135-25961282)
chr2 (94-174)||(30786444-30786524)
chr2 (141-212)||(18143963-18144034)
chr2 (163-224)||(29166947-29167008)
[»] chr3 (25 HSPs)
chr3 (98-336)||(45708570-45708809)
chr3 (98-328)||(46163819-46164049)
chr3 (98-337)||(33140276-33140516)
chr3 (121-336)||(55213988-55214204)
chr3 (133-328)||(32808183-32808380)
chr3 (135-336)||(2051504-2051706)
chr3 (98-336)||(12088989-12089228)
chr3 (92-276)||(36012603-36012788)
chr3 (141-336)||(26244988-26245183)
chr3 (106-326)||(3157669-3157889)
chr3 (162-336)||(26122081-26122257)
chr3 (98-237)||(33140505-33140645)
chr3 (97-237)||(26121950-26122091)
chr3 (98-225)||(46164060-46164187)
chr3 (97-237)||(26244857-26244998)
chr3 (121-237)||(26244184-26244301)
chr3 (97-237)||(43031125-43031262)
chr3 (98-225)||(32808394-32808523)
chr3 (98-237)||(43804116-43804256)
chr3 (98-193)||(39840636-39840731)
chr3 (98-207)||(12089251-12089359)
chr3 (121-212)||(12015030-12015121)
chr3 (92-154)||(27812176-27812238)
chr3 (170-207)||(3157919-3157956)
chr3 (133-193)||(7565626-7565685)
[»] chr4 (26 HSPs)
chr4 (98-336)||(51103494-51103733)
chr4 (97-337)||(35251514-35251755)
chr4 (98-336)||(22886417-22886659)
chr4 (98-336)||(22938081-22938323)
chr4 (123-328)||(4892523-4892727)
chr4 (121-327)||(4872684-4872890)
chr4 (125-336)||(43049228-43049437)
chr4 (125-336)||(54511445-54511654)
chr4 (182-336)||(34932186-34932341)
chr4 (98-328)||(45302323-45302554)
chr4 (97-237)||(4892384-4892525)
chr4 (97-225)||(4872545-4872672)
chr4 (227-337)||(40681566-40681676)
chr4 (97-237)||(51103363-51103504)
chr4 (98-226)||(39864090-39864218)
chr4 (94-180)||(35004468-35004554)
chr4 (217-325)||(42077140-42077249)
chr4 (162-237)||(45302552-45302628)
chr4 (123-237)||(22886649-22886764)
chr4 (123-237)||(22938313-22938428)
chr4 (107-178)||(40681720-40681791)
chr4 (124-225)||(35251411-35251512)
chr4 (179-239)||(42077249-42077310)
chr4 (135-198)||(44137403-44137466)
chr4 (98-210)||(34932055-34932168)
chr4 (98-150)||(13432803-13432855)
[»] chr5 (10 HSPs)
chr5 (99-336)||(36150733-36150970)
chr5 (99-336)||(13932689-13932927)
chr5 (95-336)||(8999656-8999901)
chr5 (98-237)||(36150960-36151100)
chr5 (225-336)||(20730458-20730572)
chr5 (97-193)||(17990742-17990838)
chr5 (123-198)||(22843767-22843842)
chr5 (98-165)||(32508907-32508974)
chr5 (92-156)||(11275832-11275896)
chr5 (126-194)||(22843902-22843969)
[»] chr1 (18 HSPs)
chr1 (141-328)||(27133990-27134178)
chr1 (98-336)||(4067009-4067246)
chr1 (98-336)||(33321165-33321404)
chr1 (98-336)||(23329296-23329535)
chr1 (107-328)||(49784530-49784750)
chr1 (106-337)||(34535418-34535655)
chr1 (121-278)||(38208279-38208437)
chr1 (139-237)||(4066923-4067019)
chr1 (110-193)||(27133831-27133914)
chr1 (95-174)||(49784816-49784895)
chr1 (134-237)||(33321071-33321175)
chr1 (98-193)||(7481195-7481290)
chr1 (96-194)||(20993852-20993950)
chr1 (101-145)||(31063232-31063276)
chr1 (96-187)||(2464189-2464280)
chr1 (98-193)||(28504688-28504783)
chr1 (97-175)||(2464053-2464131)
chr1 (121-158)||(38208526-38208563)
[»] chr7 (22 HSPs)
chr7 (98-328)||(35315842-35316073)
chr7 (98-328)||(47195-47426)
chr7 (120-328)||(33190020-33190228)
chr7 (98-328)||(26073281-26073512)
chr7 (98-328)||(26097068-26097299)
chr7 (141-321)||(527461-527641)
chr7 (98-237)||(32047233-32047373)
chr7 (98-337)||(7511079-7511306)
chr7 (98-237)||(33189882-33190022)
chr7 (121-237)||(35316071-35316188)
chr7 (98-237)||(26073143-26073283)
chr7 (123-237)||(25658412-25658527)
chr7 (107-193)||(5964242-5964328)
chr7 (98-237)||(26096930-26097070)
chr7 (225-336)||(25658517-25658627)
chr7 (98-193)||(36642607-36642702)
chr7 (98-184)||(21297713-21297799)
chr7 (120-203)||(32056648-32056730)
chr7 (121-194)||(5964012-5964086)
chr7 (244-313)||(36642760-36642829)
chr7 (127-193)||(32056866-32056932)
chr7 (141-198)||(6080048-6080105)
[»] chr6 (12 HSPs)
chr6 (95-328)||(16434801-16435034)
chr6 (101-336)||(67469-67705)
chr6 (122-336)||(10388348-10388565)
chr6 (216-336)||(30847754-30847875)
chr6 (97-237)||(10388217-10388358)
chr6 (98-237)||(67339-67479)
chr6 (98-203)||(6714521-6714625)
chr6 (94-237)||(30847620-30847764)
chr6 (121-194)||(30122816-30122889)
chr6 (101-233)||(3687627-3687763)
chr6 (251-305)||(30122481-30122535)
chr6 (164-238)||(3687820-3687895)
[»] scaffold0024 (2 HSPs)
scaffold0024 (110-264)||(70764-70919)
scaffold0024 (124-208)||(70614-70698)
[»] scaffold0081 (1 HSPs)
scaffold0081 (246-312)||(8603-8669)
[»] scaffold0022 (1 HSPs)
scaffold0022 (96-193)||(122548-122645)


Alignment Details
Target: chr8 (Bit Score: 152; Significance: 2e-80; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 133 - 328
Target Start/End: Complemental strand, 23488919 - 23488724
Alignment:
Q  133 aaattctcaaattggtctctgactctttgaataactcaaaatggtctctgtctttgtcaaatatttgtcagattggtccttgactctattagtgttttgt 232  Q
    ||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  23488919 aaattctcaaattggtccctgactctatgaataattcaaaatggtctctgtctttgtcaaatatttctcagattggtccttgactctattagtgttttgt 23488820  T
Q  233 attttgagtgttaatgactcaatgtcttttggatattatttagtggctaatgacataatattttttggatcttatttggtacgctaatgacttaaa 328  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||  ||||| ||||||||||| |||| ||||||||||||    
T  23488819 attttgagtgttaatgactcaatgtcttttggatattatttagtggttagtgacataatggtttttagatcttatttgatacgttaatgacttaaa 23488724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 98 - 336
Target Start/End: Complemental strand, 5074620 - 5074381
Alignment:
Q  98 gagtaaatcatcaaattgatccatgtctttgtacgaaattctcaaattggtctctgactctttgaataactcaaaatggtctctgtctttgtcaaatatt 197  Q
    ||||||| |||||||||||||||| ||||||||| ||||||||||||||||| ||| |||| | ||||||||||||||||| ||||||||||||||| ||    
T  5074620 gagtaaaccatcaaattgatccatatctttgtaccaaattctcaaattggtccctgtctctattaataactcaaaatggtccctgtctttgtcaaatgtt 5074521  T
Q  198 tgtcagattggtccttgactctattag-tgttttgtattttgagtgttaatgactcaatgtcttttggatattatttagtggctaatgacataatatttt 296  Q
    | |||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||   ||    
T  5074520 tttcagattggttcctgactctattagttgttttgtattttgagtgttaatgactcaatgtcttttggatattatttggtggttaatggcataatgcctt 5074421  T
Q  297 ttggatcttatttggtacgctaatgacttaaagtacaaaa 336  Q
     | |||| ||||||||||| |||||  ||||| |||||||    
T  5074420 ctcgatcatatttggtacgttaatggtttaaaatacaaaa 5074381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 50 - 239
Target Start/End: Complemental strand, 23489111 - 23488923
Alignment:
Q  50 gcaattgaaaggggcacatgactgttggttgaattagaggaattaaacgagtaaatcatcaaattgatccatgtctttgtacgaaattctcaaattggtc 149  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||| |||||||||||||||||    
T  23489111 gcaattgaaaggg-cacgtgactgttggttgaattagaggaattaaatgagtaaatcaccaaattgatccttgtctttgtaccaaattctcaaattggtc 23489013  T
Q  150 tctgactctttgaataactcaaaatggtctctgtctttgtcaaatatttgtcagattggtccttgactctattagtgttttgtattttga 239  Q
      ||||||| |||||||||||||||||||  |||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||    
T  23489012 catgactctatgaataactcaaaatggtcattgtctttgtcaaatgtttctcaaattggtccttgactctattagtgttttgtattttga 23488923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 95 - 328
Target Start/End: Original strand, 11732590 - 11732824
Alignment:
Q  95 aacgagtaaatcatcaaattgatccatgtctttgtacgaaattctcaaattggtctctgactctttgaataactcaaaatggtctctgtctttgtcaaat 194  Q
    |||||||||| |||||||||  | ||||||||||||| ||||| |||| |||||| |||||||| | ||||| ||||||||||||||||| |||| || |    
T  11732590 aacgagtaaaccatcaaattagtacatgtctttgtaccaaattttcaatttggtcactgactctattaataattcaaaatggtctctgtcattgtgaagt 11732689  T
Q  195 atttgtcagattggtccttgactctattagt-gttttgtattttgagtgttaatgactcaatgtcttttggatattatttagtggctaatgacataatat 293  Q
     ||| | ||||||||| ||||||||||| || |||||||||||||||||||||||||||||| || |||| |||||||||||||| ||||| ||||||      
T  11732690 gtttcttagattggtctttgactctatttgttgttttgtattttgagtgttaatgactcaatatcatttgaatattatttagtggttaatggcataatgc 11732789  T
Q  294 tttttggatcttatttggtacgctaatgacttaaa 328  Q
     ||||||||||||||||||||| ||||| ||||||    
T  11732790 attttggatcttatttggtacgttaatggcttaaa 11732824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 121 - 328
Target Start/End: Original strand, 38225455 - 38225663
Alignment:
Q  121 tgtctttgtacgaaattctcaaattggtctctgactctttgaataactcaaaatggtctctgtctttgtcaaatatttgtcagattggtccttgactcta 220  Q
    ||||||||||| |||||||||| |||||| || ||||| | ||||||||||||||||||  || |||||||||||||| |||||||||||  ||||||||    
T  38225455 tgtctttgtaccaaattctcaatttggtcccttactctattaataactcaaaatggtcttggtatttgtcaaatatttttcagattggtctctgactcta 38225554  T
Q  221 ttag-tgttttgtattttgagtgttaatgactcaatgtcttttggatattatttagtggctaatgacataatattttttggatcttatttggtacgctaa 319  Q
    |||| ||||||| ||||| |||||||||| ||||||||||||||||||||||| ||| | |||||||||||||  ||||||||| |||||||| ||  ||    
T  38225555 ttagttgttttgcattttaagtgttaatggctcaatgtcttttggatattattcagttgttaatgacataataccttttggatcctatttggtgcgtcaa 38225654  T
Q  320 tgacttaaa 328  Q
    |||||||||    
T  38225655 tgacttaaa 38225663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 94 - 328
Target Start/End: Original strand, 42950337 - 42950572
Alignment:
Q  94 aaacgagtaaatcatcaaattgatccatgtctttgtacgaaattctcaaattggtctctgactctttgaataactcaaaatggtctctgtctttgtcaaa 193  Q
    ||||||||||| |||||||||| | | ||||||||||  ||||| |||| ||| || || ||| | | |||||||||||||| ||| || | ||||||||    
T  42950337 aaacgagtaaaccatcaaattggttcttgtctttgtatcaaattttcaatttgatccctaactttattaataactcaaaatgatctatgccgttgtcaaa 42950436  T
Q  194 tatttgtcagattggtccttgactctattagt-gttttgtattttgagtgttaatgactcaatgtcttttggatattatttagtggctaatgacataata 292  Q
    | ||| |||||||||||| | ||||| ||| | |||||||||||||||||||||||  ||||||||||||| ||||||||||||||||||| |||||||     
T  42950437 tgtttctcagattggtccctaactctgttaattgttttgtattttgagtgttaatggttcaatgtcttttgaatattatttagtggctaataacataatg 42950536  T
Q  293 ttttttggatcttatttggtacgctaatgacttaaa 328  Q
    | |||||||||||||||| |||| |||| |||||||    
T  42950537 tcttttggatcttatttgatacgttaataacttaaa 42950572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 101 - 328
Target Start/End: Original strand, 42026946 - 42027174
Alignment:
Q  101 taaatcatcaaattgatccatgtctttgtacgaaattctcaaattggtctctgactctttgaataactcaaaatggtctctgtctttgtcaaatatttgt 200  Q
    ||||||| ||||||||||  ||||||| ||| ||||| | ||||||||| | |||| | | |||||||||||||| | |  ||||||||||||  ||| |    
T  42026946 taaatcaccaaattgatcattgtctttttaccaaatttttaaattggtccccgactttattaataactcaaaatgtttttcgtctttgtcaaacctttct 42027045  T
Q  201 cagattggtccttgactctattagt-gttttgtattttgagtgttaatgactcaatgtcttttggatattatttagtggctaatgacataatattttttg 299  Q
    || |||| ||| ||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||   |||||    
T  42027046 caaattgatccgtgactctattaattgttttgtattttgagttttaatgactcaatgtcttttggatattatttagtggtttatgacataatgccttttg 42027145  T
Q  300 gatcttatttggtacgctaatgacttaaa 328  Q
    ||||||||||| |||  ||||||||||||    
T  42027146 gatcttatttgatacattaatgacttaaa 42027174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 98 - 288
Target Start/End: Original strand, 16997093 - 16997286
Alignment:
Q  98 gagtaaatcatcaaattgatccatgtctttgtacgaaattctcaaattggtctctgactctttgaataactcaaaatggtctctgtctttgtcaaatatt 197  Q
    ||||||| |||||||||| ||| | ||||||||| ||||| |||| |||||  || ||||| | |||||||||||||||||| |||||||||||||| ||    
T  16997093 gagtaaaccatcaaattggtccctatctttgtaccaaattatcaatttggttcctaactctattaataactcaaaatggtctttgtctttgtcaaatgtt 16997192  T
Q  198 tgtcagattggtc--cttgactctattag-tgttttgtattttgagtgttaatgactcaatgtcttttggatattatttagtggctaatgacat 288  Q
    | |||  ||||||  | |||||||||||| ||||||||||||||||| ||||||  ||||||||||||| |||||||||||||| |||||||||    
T  16997193 tctcatgttggtccacatgactctattagttgttttgtattttgagttttaatggttcaatgtcttttgaatattatttagtggttaatgacat 16997286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 216 - 336
Target Start/End: Original strand, 41480624 - 41480745
Alignment:
Q  216 ctctattagt-gttttgtattttgagtgttaatgactcaatgtcttttggatattatttagtggctaatgacataatattttttggatcttatttggtac 314  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||| ||| | ||||||||||||||    
T  41480624 ctctattagttgttttgtattttgagtgttaatgactcaatgtcttttgaatattatttagtggttaatggcataatatctttcgaatcttatttggtac 41480723  T
Q  315 gctaatgacttaaagtacaaaa 336  Q
    | |||||||||||| |||||||    
T  41480724 gttaatgacttaaaatacaaaa 41480745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 152 - 328
Target Start/End: Original strand, 18385779 - 18385954
Alignment:
Q  152 tgactctttgaataactcaaaatggtctctgtctttgtcaaatatttgtcagattggtccttgactctattagt-gttttgtattttgagtgttaatgac 250  Q
    ||||||| | ||||||||||||| ||||  |||||||||||| |||| ||||||||||||   |||| |||| | |||||||||||| ||||||||||||    
T  18385779 tgactctattaataactcaaaattgtct--gtctttgtcaaacatttatcagattggtccccaactccattaattgttttgtattttaagtgttaatgac 18385876  T
Q  251 tcaatgtcttttggatattatttagtggctaatgacataatattttttggatcttatttggtacgctaatgacttaaa 328  Q
    ||||| ||||||| |||||||||||||| |||||||||||| | ||||| ||||||||||||||  |||||| |||||    
T  18385877 tcaatatcttttgaatattatttagtggttaatgacataatgtcttttgaatcttatttggtacattaatgatttaaa 18385954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 98 - 237
Target Start/End: Complemental strand, 41480875 - 41480735
Alignment:
Q  98 gagtaaatcatcaaattgatccatgtctttgtacgaaattctcaaattggtctctgactctttgaataactcaaaatggtctctgtctttgtcaaatatt 197  Q
    |||||||||||||| ||  ||| | ||||||||| ||||||||| |||| || |||||| | | ||||||||||||||||  |||||||||||||| |||    
T  41480875 gagtaaatcatcaatttagtccctatctttgtaccaaattctcatattgttccctgactttattaataactcaaaatggttactgtctttgtcaaacatt 41480776  T
Q  198 tgtcagattggtccttgactctattag-tgttttgtatttt 237  Q
    | ||| |||| |||||||||||||||| |||||||||||||    
T  41480775 tttcatattgatccttgactctattagttgttttgtatttt 41480735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 98 - 225
Target Start/End: Original strand, 7905633 - 7905760
Alignment:
Q  98 gagtaaatcatcaaattgatccatgtctttgtacgaaattctcaaattggtctctgactctttgaataactcaaaatggtctctgtctttgtcaaatatt 197  Q
    ||||||| |||||||||  | | ||||||||||| ||||| ||||||| ||| |||||||| | |||||||||||||| ||||||||||| |||||  ||    
T  7905633 gagtaaaccatcaaattacttcctgtctttgtaccaaattttcaaattagtccctgactctattaataactcaaaatgatctctgtctttatcaaacgtt 7905732  T
Q  198 tgtcagattggtccttgactctattagt 225  Q
    | |||||||||||| || ||||||||||    
T  7905733 tttcagattggtccctggctctattagt 7905760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 98 - 223
Target Start/End: Complemental strand, 34153578 - 34153454
Alignment:
Q  98 gagtaaatcatcaaattgatccatgtctttgtacgaaattctcaaattggtctctgactctttgaataactcaaaatggtctctgtctttgtcaaatatt 197  Q
    ||||||| || ||||||||||  ||| ||||||| ||||| |||||||||||| ||||||| | |||||||||||||| | | |||||||||||||  ||    
T  34153578 gagtaaaccaccaaattgatcactgtttttgtaccaaattatcaaattggtctatgactctattaataactcaaaatgat-tatgtctttgtcaaacgtt 34153480  T
Q  198 tgtcagattggtccttgactctatta 223  Q
    | ||| |||||| |||||||||||||    
T  34153479 tctcaaattggttcttgactctatta 34153454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 98 - 225
Target Start/End: Complemental strand, 42950710 - 42950583
Alignment:
Q  98 gagtaaatcatcaaattgatccatgtctttgtacgaaattctcaaattggtctctgactctttgaataactcaaaatggtctctgtctttgtcaaatatt 197  Q
    ||||||| ||||| |||  || |||||||||||  ||||| | |||| ||||||||||||| | |||||||||||||||||  ||||||||||||| |||    
T  42950710 gagtaaaccatcagattagtctatgtctttgtattaaatttttaaataggtctctgactctattaataactcaaaatggtcattgtctttgtcaaacatt 42950611  T
Q  198 tgtcagattggtccttgactctattagt 225  Q
    | ||| |||| ||  |||||||||||||    
T  42950610 tctcatattgatctctgactctattagt 42950583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 173 - 336
Target Start/End: Complemental strand, 42373496 - 42373332
Alignment:
Q  173 atggtctctgtctttgtcaaatatttgtcagattggtccttgactctattagt-gttttgtattttgagtgttaatgactcaatgtcttttggatattat 271  Q
    ||||||||| |||||||||||  ||| |   ||| ||| |||||||||||| | |||| ||||||||||||||||||  ||||| | ||||  |||||||    
T  42373496 atggtctctatctttgtcaaacttttctataatttgtctttgactctattacttgtttagtattttgagtgttaatggttcaatattttttaaatattat 42373397  T
Q  272 ttagtggctaatgacataatattttttggatcttatttggtacgctaatgacttaaagtacaaaa 336  Q
    ||| ||| | |||  ||||| | |||||||| ||||||| || | |||||||||||| |||||||    
T  42373396 ttaatggttcatggaataatgtcttttggatgttatttgatatgttaatgacttaaaatacaaaa 42373332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 245 - 328
Target Start/End: Original strand, 34153358 - 34153441
Alignment:
Q  245 aatgactcaatgtcttttggatattatttagtggctaatgacataatattttttggatcttatttggtacgctaatgacttaaa 328  Q
    |||||||| || |||||||||||||||||||||| ||||| ||||||   |||||||||||||||| |||  ||||| ||||||    
T  34153358 aatgactctatctcttttggatattatttagtggttaatggcataatgcattttggatcttatttgatacattaatggcttaaa 34153441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 121 - 207
Target Start/End: Complemental strand, 42027289 - 42027203
Alignment:
Q  121 tgtctttgtacgaaattctcaaattggtctctgactctttgaataactcaaaatggtctctgtctttgtcaaatatttgtcagattg 207  Q
    ||||||| ||| ||||||| |||||||||||||||||| | ||||||| ||||||||   |||||||||||||| ||| ||| ||||    
T  42027289 tgtctttatacaaaattcttaaattggtctctgactctattaataacttaaaatggttcttgtctttgtcaaatctttctcaaattg 42027203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 122 - 223
Target Start/End: Complemental strand, 38225777 - 38225676
Alignment:
Q  122 gtctttgtacgaaattctcaaattggtctctgactctttgaataactcaaaatggtctctgtctttgtcaaatatttgtcagattggtccttgactctat 221  Q
    |||||| ||| ||||| ||||||||||| |||||||| | ||||| | ||||||||   ||||||||||||| |||  ||| |||||||| |||||||||    
T  38225777 gtctttataccaaattatcaaattggtccctgactctattaataatttaaaatggttcatgtctttgtcaaacattcctcatattggtccctgactctat 38225678  T
Q  222 ta 223  Q
    ||    
T  38225677 ta 38225676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 123 - 237
Target Start/End: Original strand, 5074277 - 5074391
Alignment:
Q  123 tctttgtacgaaattctcaaattggtctctgactctttgaataactcaaaatggtctctgtctttgtcaaatatttgtcagattggtccttgactctatt 222  Q
    ||||||||  ||||| | ||||||||| || ||||| |||||||||||||||  |||||||||||||||||| ||| ||| |||| |||  || | ||||    
T  5074277 tctttgtatcaaatttttaaattggtc-ctaactctatgaataactcaaaataatctctgtctttgtcaaatgtttctcaaattgatccccgattttatt 5074375  T
Q  223 ag-tgttttgtatttt 237  Q
    || |||||||||||||    
T  5074376 agctgttttgtatttt 5074391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 121 - 236
Target Start/End: Original strand, 23488610 - 23488726
Alignment:
Q  121 tgtctttgtacgaaattctcaaattggtctctgactctttgaataactcaaaatggtctctgtctttgtcaaatatttgtcagattggtccttgactcta 220  Q
    ||||||| ||| ||||| || ||||  || |||| ||| ||||||||||||||||||  ||| ||||||||||| ||| | |||||| | ||  |||||     
T  23488610 tgtctttctaccaaattttctaattaatcactgattctatgaataactcaaaatggttcctgactttgtcaaatgtttcttagattgattctatactctc 23488709  T
Q  221 ttag-tgttttgtattt 236  Q
    |||| ||||||||||||    
T  23488710 ttagttgttttgtattt 23488726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 125; Significance: 2e-64; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 124 - 336
Target Start/End: Original strand, 29469541 - 29469756
Alignment:
Q  124 ctttgtacgaaattctcaaattggtctctgactctttgaataactcaaaatggtctctgtctttgtcaaatatttgtcagattggtcct--tgactctat 221  Q
    |||||||| |||||||||||||||||  ||||||| | ||||||||||||||||| ||||||||||||||| ||| ||||||| ||||   |||||||||    
T  29469541 ctttgtaccaaattctcaaattggtcattgactctattaataactcaaaatggtcgctgtctttgtcaaatgtttctcagattagtccccctgactctat 29469640  T
Q  222 tagt-gttttgtattttgagtgttaatgactcaatgtcttttggatattatttagtggctaatgacataatattttttggatcttatttggtacgctaat 320  Q
    || | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||| ||||||||||| |||| ||||    
T  29469641 taattgttttgtattttgagtgttaatgactcaatgtcttttggatattatttagtggttaatgacataatgtcttttcgatcttatttgatacgttaat 29469740  T
Q  321 gacttaaagtacaaaa 336  Q
    |||||||| |||||||    
T  29469741 gacttaaaatacaaaa 29469756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 99 - 328
Target Start/End: Complemental strand, 36937870 - 36937640
Alignment:
Q  99 agtaaatcatcaaattgatccatgtctttgtacgaaattctcaaattggtctctgactctttgaataactcaaaatggtctctgtctttgtcaaatattt 198  Q
    |||||| |||||||||| | | ||||||||||| |||||||||| ||||||  ||||||| | ||||||| |||||||||||||||||||| |||| |||    
T  36937870 agtaaaccatcaaattggttcttgtctttgtaccaaattctcaatttggtccttgactctattaataactgaaaatggtctctgtctttgtgaaatgttt 36937771  T
Q  199 gtcagattggtccttgactctattagt-gttttgtattttgagtgttaatgactcaatgtcttttggatattatttagtggctaatgacataatattttt 297  Q
     ||| |||| ||| ||||||||||||| |||||||||||||||||||||||||||| | |||||| ||||||||||||||| ||||||||||||   |||    
T  36937770 ctcaaattgatccctgactctattagttgttttgtattttgagtgttaatgactcagtatcttttagatattatttagtggttaatgacataatgccttt 36937671  T
Q  298 tggatcttatttggtacgctaatgacttaaa 328  Q
    |||||||||||||||||| | ||| ||||||    
T  36937670 tggatcttatttggtacgttgatggcttaaa 36937640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 117 - 336
Target Start/End: Original strand, 26407420 - 26407640
Alignment:
Q  117 tccatgtctttgtacgaaattctcaaattggtctctgactctttgaataactcaaaatggtctctgtctttgtcaaatatttgtcagattggtccttgac 216  Q
    ||||||||||||||| ||||| |||||||||| || |||||| | ||||||||||||||||| ||||||||||||||  ||| |||||||||||| || |    
T  26407420 tccatgtctttgtaccaaattttcaaattggtttcagactctattaataactcaaaatggtccctgtctttgtcaaacttttctcagattggtccatgtc 26407519  T
Q  217 tctattag-tgttttgtattttgagtgttaatgactcaatgtcttttggatattatttagtggctaatgacataatattttttggatcttatttggtacg 315  Q
    |||||||| || |||||||||||||||||||||  ||||| ||||||| |||||||||||||| |||||   ||||   ||| |||||||||||||||||    
T  26407520 tctattagttgatttgtattttgagtgttaatggttcaatatcttttgaatattatttagtggttaatggtctaatgcctttcggatcttatttggtacg 26407619  T
Q  316 ctaatgacttaaagtacaaaa 336  Q
     |||| ||||||| |||||||    
T  26407620 ttaataacttaaaatacaaaa 26407640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 134 - 328
Target Start/End: Original strand, 29166738 - 29166935
Alignment:
Q  134 aattctcaaattggtctctgactctttgaataactcaaaatggtctctgtctttgtcaaatatttgtc--agattggtccttgactctattagt-gtttt 230  Q
    |||||| || |||||| | |||||| | |||||||||||| ||||  ||||||||| |||| ||| ||  ||||||| || ||| ||||||||| |||||    
T  29166738 aattcttaatttggtccccgactctattaataactcaaaacggtccttgtctttgtgaaatgtttctctcagattgggccctgagtctattagttgtttt 29166837  T
Q  231 gtattttgagtgttaatgactcaatgtcttttggatattatttagtggctaatgacataatattttttggatcttatttggtacgctaatgacttaaa 328  Q
    |||||| |||||||||||||| ||||||||||| |||||||||||||| |||||  |||||   ||||||||||||||| ||||| ||||||||||||    
T  29166838 gtatttcgagtgttaatgacttaatgtcttttgaatattatttagtggttaatggtataatgccttttggatcttatttagtacgttaatgacttaaa 29166935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 98 - 237
Target Start/End: Original strand, 36937504 - 36937642
Alignment:
Q  98 gagtaaatcatcaaattgatccatgtctttgtacgaaattctcaaattggtctctgactctttgaataactcaaaatggtctctgtctttgtcaaatatt 197  Q
    ||||||| || ||||||  ||| | ||||||||| |||||||||||||||||||||||||| | ||||||||  |||||||| ||||||||||||| |||    
T  36937504 gagtaaaccaccaaattagtccctatctttgtaccaaattctcaaattggtctctgactctattaataactc--aatggtctttgtctttgtcaaacatt 36937601  T
Q  198 tgtcagattggtccttgactctattag-tgttttgtatttt 237  Q
    | | |||||||| |||||||||||||| ||||||| |||||    
T  36937602 tcttagattggtacttgactctattagttgttttgcatttt 36937642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 98 - 237
Target Start/End: Complemental strand, 26407770 - 26407630
Alignment:
Q  98 gagtaaatcatcaaattgatccatgtctttgtacgaaattctcaaattggtctctgactctttgaataactcaaaatggtctctgtctttgtcaaatatt 197  Q
    |||||||||||||| ||  ||| ||||||||||| ||||| ||| ||||||| |||||||| | ||||| ||||||||||| |||||||||||||  |||    
T  26407770 gagtaaatcatcaatttagtccctgtctttgtaccaaattttcatattggtccctgactctattaataattcaaaatggtccctgtctttgtcaatcatt 26407671  T
Q  198 tgtcagattggtccttgactctattag-tgttttgtatttt 237  Q
    | |||  ||| |||||||||||||||| |||||||||||||    
T  26407670 tttcatgttgatccttgactctattagttgttttgtatttt 26407630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 152 - 298
Target Start/End: Original strand, 25961135 - 25961282
Alignment:
Q  152 tgactctttgaataactcaaaatggtctctgtctttgtcaaatatttgtcagattggtccttgactctattagt-gttttgtattttgagtgttaatgac 250  Q
    ||||||| | ||||||| ||||||||| |||| ||| |||||  ||| ||| ||| ||| |||||||||||| | |||||||| | | |||||||||| |    
T  25961135 tgactctattaataacttaaaatggtccctgtttttatcaaacgtttctcatattagtctttgactctattaattgttttgtactgtaagtgttaatggc 25961234  T
Q  251 tcaatgtcttttggatattatttagtggctaatgacataatatttttt 298  Q
    ||||||| |||| ||||||||||||||| |||||||||||| ||||||    
T  25961235 tcaatgttttttagatattatttagtggttaatgacataatgtttttt 25961282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 94 - 174
Target Start/End: Complemental strand, 30786524 - 30786444
Alignment:
Q  94 aaacgagtaaatcatcaaattgatccatgtctttgtacgaaattctcaaattggtctctgactctttgaataactcaaaat 174  Q
    ||||||||||| |||||||||||||  ||||||||||| ||| | |||||||| || |||||||| | |||||||||||||    
T  30786524 aaacgagtaaaccatcaaattgatctttgtctttgtaccaaactttcaaattgatccctgactctattaataactcaaaat 30786444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 141 - 212
Target Start/End: Complemental strand, 18144034 - 18143963
Alignment:
Q  141 aaattggtctctgactctttgaataactcaaaatggtctctgtctttgtcaaatatttgtcagattggtcct 212  Q
    |||||||||||||||||| | ||||||||||||||||   ||| |||||||||  ||| |||||||||||||    
T  18144034 aaattggtctctgactctattaataactcaaaatggttcatgtttttgtcaaacgtttatcagattggtcct 18143963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 224
Target Start/End: Complemental strand, 29167008 - 29166947
Alignment:
Q  163 ataactcaaaatggtctctgtctttgtcaaatatttgtcagattggtccttgactctattag 224  Q
    ||||||||||||||||||||| |||||||||  ||| |||||||| ||| | ||| ||||||    
T  29167008 ataactcaaaatggtctctgtttttgtcaaacgtttctcagattgatccctaactatattag 29166947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 124; Significance: 1e-63; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 98 - 336
Target Start/End: Complemental strand, 45708809 - 45708570
Alignment:
Q  98 gagtaaatcatcaaattgatccatgtctttgtacgaaattctcaaattggtctctgactctttgaataactcaaaatggtctctgtctttgtcaaatatt 197  Q
    ||||||||||| |||||| ||||||||||||||| ||| | | ||||||||| |||||| | | ||||||||||||||| ||||||||||||||||  ||    
T  45708809 gagtaaatcattaaattggtccatgtctttgtactaaaattttaaattggtcactgactatgttaataactcaaaatggcctctgtctttgtcaaacgtt 45708710  T
Q  198 tgtcagattggtccttgactctattagt-gttttgtattttgagtgttaatgactcaatgtcttttggatattatttagtggctaatgacataatatttt 296  Q
      ||| |||||||  |||||| |||||| |||||||||||||| |||||||||||||||||||||| ||||||||||||| | |||||||||||| ||||    
T  45708709 cctcaaattggtctctgactcgattagttgttttgtattttgactgttaatgactcaatgtcttttagatattatttagtcgttaatgacataatttttt 45708610  T
Q  297 ttggatcttatttggtacgctaatgacttaaagtacaaaa 336  Q
    ||||||||||||||||||| | |||||||||| |||||||    
T  45708609 ttggatcttatttggtacgttgatgacttaaaatacaaaa 45708570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 98 - 328
Target Start/End: Original strand, 46163819 - 46164049
Alignment:
Q  98 gagtaaatcatcaaattgatccatgtctttgtacgaaattctcaaattggtctctgactctttgaataactcaaaatggtctctgtctttgtcaaatatt 197  Q
    ||||||| |||||| ||| ||| ||||||||||| |||||||||| ||||||   |||||| | ||||||||||||||||| ||||||||||||||| ||    
T  46163819 gagtaaaccatcaagttggtccctgtctttgtaccaaattctcaatttggtccgcgactctattaataactcaaaatggtccctgtctttgtcaaatgtt 46163918  T
Q  198 tgtcagattggtccttgactctattagt-gttttgtattttgagtgttaatgactcaatgtcttttggatattatttagtggctaatgacataatatttt 296  Q
    | |||||||| |||| |||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||| |||||| | ||    
T  46163919 tctcagattgatcct-gactctattaattgttttgtattttgagtgttaatggctcaatgtcttttggatattatttagtagttaatggcataatgtctt 46164017  T
Q  297 ttggatcttatttggtacgctaatgacttaaa 328  Q
    ||||||||||||||||||| ||||| ||||||    
T  46164018 ttggatcttatttggtacgttaatggcttaaa 46164049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 98 - 337
Target Start/End: Original strand, 33140276 - 33140516
Alignment:
Q  98 gagtaaatcatcaaattgatccatgtctttgtacgaaattctcaaattggtctctgactctttgaataactcaaaatggtctctgtctttgtcaaatatt 197  Q
    ||||||||||| || ||| ||||||||||||||  ||||||| ||||| || ||||||||| | |||||||||||||| | | ||||||||||||| |||    
T  33140276 gagtaaatcattaatttggtccatgtctttgtatcaaattcttaaattagtttctgactctattaataactcaaaatgatttttgtctttgtcaaacatt 33140375  T
Q  198 tgtcagattggtccttgactctattagtg-ttttgtattttgagtgttaatgactcaatgtcttttggatattatttagtggctaatgacataatatttt 296  Q
    | ||| ||||||| |  ||| |||||||  |||||||||||||||||||||| || ||||||||||||||||||||||   | ||||||||||||   ||    
T  33140376 tttcaaattggtcatcaactttattagttattttgtattttgagtgttaatgtcttaatgtcttttggatattatttaaccgttaatgacataatgcctt 33140475  T
Q  297 ttggatcttatttggtacgctaatgacttaaagtacaaaat 337  Q
    || |||||||||||||| | |||||||||||| ||||||||    
T  33140476 tttgatcttatttggtatgttaatgacttaaaatacaaaat 33140516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 121 - 336
Target Start/End: Original strand, 55213988 - 55214204
Alignment:
Q  121 tgtctttgtacgaaattctcaaattggtctctgactctttgaataactcaaaatggtctctgtctttgtcaaatatttgtcagattggtccttgactcta 220  Q
    ||||||||||| ||||| |||||||||| ||||| ||| | |||||||||||||||||   ||||||||||||  ||| ||| |||||||   |||||||    
T  55213988 tgtctttgtaccaaattttcaaattggtatctgaatctattaataactcaaaatggtcaaggtctttgtcaaacgtttctcaaattggtctccgactcta 55214087  T
Q  221 ttagtg-ttttgtattttgagtgttaatgactcaatgtcttttggatattatttagtggctaatgacataatattttttggatcttatttggtacgctaa 319  Q
    |||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||| |||| ||||||| | ||||| ||||||||||||| | |||    
T  55214088 ttagtggttttgcattttgagtgttaatgattcaatgtcttttggatattatttagtggttaataacataatgtcttttgaatcttatttggtatgttaa 55214187  T
Q  320 tgacttaaagtacaaaa 336  Q
    | |||| || |||||||    
T  55214188 tcacttcaaatacaaaa 55214204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 133 - 328
Target Start/End: Original strand, 32808183 - 32808380
Alignment:
Q  133 aaattctcaaattggtctctgactctttgaataactcaaaatggtctctgtctttgtcaaatatttgtcagattggtccttgac-tctattagt-gtttt 230  Q
    ||||| ||||||||||| |||||||| | |||||||||||||| |||||||||||||||||| ||| ||| |||||||  |||| ||||||||| |||||    
T  32808183 aaattttcaaattggtccctgactctattaataactcaaaatgatctctgtctttgtcaaatgtttctcaaattggtctctgacctctattagttgtttt 32808282  T
Q  231 gtattttgagtgttaatgactcaatgtcttttggatattatttagtggctaatgacataatattttttggatcttatttggtacgctaatgacttaaa 328  Q
    |||||||||||||||||   |||||||||||||||||||||||||||| ||||  |||||| | |||||||||||||||| |||| ||| | ||||||    
T  32808283 gtattttgagtgttaatagttcaatgtcttttggatattatttagtggttaatagcataatgtcttttggatcttatttgatacgttaagggcttaaa 32808380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 135 - 336
Target Start/End: Original strand, 2051504 - 2051706
Alignment:
Q  135 attctcaaattggtctctgactctttgaataactcaaaatggtctctgtctttgtcaaatatttgtcagattggtccttgactctattagt-gttttgta 233  Q
    |||||||||||||||||||||||| | |||||||||||||||||  | |||||||||||  ||| ||| ||||||| |||  ||||||||| ||||||||    
T  2051504 attctcaaattggtctctgactctgttaataactcaaaatggtccttatctttgtcaaacgtttctcatattggtcattgtttctattagttgttttgta 2051603  T
Q  234 ttttgagtgttaatgactcaatgtcttttggatattatttagtggctaatgacataatattttttggatcttatttggtacgctaatgacttaaagtaca 333  Q
    ||||||| |||||||  |||||| ||||| |||| |||||||||| | || ||||||| | ||||||||||||||||||||| ||||| |||||| ||||    
T  2051604 ttttgagggttaatggttcaatgccttttagataatatttagtggttgataacataatgtcttttggatcttatttggtacgttaatggcttaaaataca 2051703  T
Q  334 aaa 336  Q
    |||    
T  2051704 aaa 2051706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 98 - 336
Target Start/End: Original strand, 12088989 - 12089228
Alignment:
Q  98 gagtaaatcatcaaattgatccatgtctttgtacgaaattctcaaattggtctctgactctttgaataactcaaaatggtctctgtctttgtcaaatatt 197  Q
    ||||||||||| |||||| || |||| ||||||| ||||| | ||||||||| |||||| | | ||||| ||||||||||   ||| ||| |||||  ||    
T  12088989 gagtaaatcattaaattggtctatgtttttgtaccaaatttttaaattggtccctgactttattaataattcaaaatggttcatgtatttatcaaaattt 12089088  T
Q  198 tgtcagattggtccttgactctattagt-gttttgtattttgagtgttaatgactcaatgtcttttggatattatttagtggctaatgacataatatttt 296  Q
    | | ||||| ||||  |||||||||||| |||||||||||||||||||||||  | |||||||||||||||||||||||||| ||||| ||||||   ||    
T  12089089 ttttagattagtccccgactctattagttgttttgtattttgagtgttaatggttaaatgtcttttggatattatttagtggttaatgtcataatgcctt 12089188  T
Q  297 ttggatcttatttggtacgctaatgacttaaagtacaaaa 336  Q
    | | |||||||||| |||| |||||||||||| |||||||    
T  12089189 tagaatcttatttgatacgttaatgacttaaaatacaaaa 12089228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 92 - 276
Target Start/End: Complemental strand, 36012788 - 36012603
Alignment:
Q  92 ttaaacgagtaaatcatcaaattgatccatgtctttgtacgaaattctcaaattggtctctgactctttgaataactcaaaatggtctctgtctttgtca 191  Q
    ||||| ||||||||||  |||||| ||  ||||||||||| ||||| |||||||| ||||||||||| | ||||||||||||||||| |||||||| |||    
T  36012788 ttaaatgagtaaatcactaaattggtctctgtctttgtaccaaattatcaaattgatctctgactctattaataactcaaaatggtccctgtctttttca 36012689  T
Q  192 aatatttgtcagattggtccttgactctattag-tgttttgtattttgagtgttaatgactcaatgtcttttggatattatttagt 276  Q
    ||  ||| ||| |||||| | |||   |||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  36012688 aacgtttctcaaattggttcctgatcttattagttgttttgtattttgagtattaatgactcaatgtcttttgaatattatttagt 36012603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 141 - 336
Target Start/End: Complemental strand, 26245183 - 26244988
Alignment:
Q  141 aaattggtctctgactctttgaataactcaaaatggtctctgtctttgtcaaatatttgtcagattggtccttgactctattagt-gttttgtattttga 239  Q
    |||||||| ||||||| | | |||||||||||||| | | ||||||||| |||  ||| | |||||||||| | |||||| || | |||| |||||||||    
T  26245183 aaattggt-tctgactttattaataactcaaaatgatttatgtctttgttaaaggttttttagattggtccctaactctaataattgtttcgtattttga 26245085  T
Q  240 gtgttaatgactcaatgtcttttggatattatttagtggctaatgacataatattttttggatcttatttggtacgctaatgacttaaagtacaaaa 336  Q
     || |||||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||||||||||||||  || ||||||||| |||||||    
T  26245084 atggtaatgactcaatgtcttttgaatattatttagtggttaatgacataatgttttttggatcttatttggtacattagtgacttaaaatacaaaa 26244988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 106 - 326
Target Start/End: Original strand, 3157669 - 3157889
Alignment:
Q  106 catcaaattgatccatgtctttgtacgaaattctcaaattggtctctgactctttgaataactcaaaatggtctctgtctttgtcaaatatttgtcagat 205  Q
    |||||| ||| ||| ||||||||||| |||||||||  || |||  | ||||| | ||||| | ||||||||   | |||||||||||| ||| ||||||    
T  3157669 catcaagttggtccttgtctttgtaccaaattctcagtttcgtccataactctattaataatttaaaatggttcttttctttgtcaaatgtttctcagat 3157768  T
Q  206 tggtccttgactctattagt-gttttgtattttgagtgttaatgactcaatgtcttttggatattatttagtggctaatgacataatattttttggatct 304  Q
     |||||| |||||||||| | ||||| |||||||||||||||||  ||||||| |||||||||||||||||||  |||||||||||| | ||||||||||    
T  3157769 cggtcct-gactctattaattgttttttattttgagtgttaatggttcaatgttttttggatattatttagtgattaatgacataatgtcttttggatct 3157867  T
Q  305 tatttggtacgctaatgactta 326  Q
    ||||||||| | ||||| ||||    
T  3157868 tatttggtatgttaatggctta 3157889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 162 - 336
Target Start/End: Complemental strand, 26122257 - 26122081
Alignment:
Q  162 aataactcaaaatggtctctgtctttgtcaaatatttgtcagattggtccttgactctattagt-gttttgtattttgagtgttaatgactcaatgtctt 260  Q
    ||||||| |||||| | | ||| ||||||||| |||| | |||||||||| | |||||| || | |||| |||||||||||| |||||||||||||||||    
T  26122257 aataacttaaaatgatttatgtttttgtcaaacattttttagattggtccctaactctaataattgtttggtattttgagtggtaatgactcaatgtctt 26122158  T
Q  261 ttggatattatttagtggctaatgacataat-attttttggatcttatttggtacgctaatgacttaaagtacaaaa 336  Q
    |||||||||||||||||| |||||| | | |  ||||||||||||||||||||||  |||||| ||||| |||||||    
T  26122157 ttggatattatttagtggttaatgagagagtgtttttttggatcttatttggtacattaatgatttaaaatacaaaa 26122081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 98 - 237
Target Start/End: Complemental strand, 33140645 - 33140505
Alignment:
Q  98 gagtaaatcatcaaattgatccatgtctttgtacgaaattctcaaattggtctctgactctttgaataactcaaaatggtctctgtctttgtcaaatatt 197  Q
    ||||||||||  |||||| ||| ||||||||||| |||| ||||||||| ||||||||||| | ||||||||||||||||| |||||||||||||| |||    
T  33140645 gagtaaatcactaaattggtccttgtctttgtaccaaatgctcaaattgatctctgactctattaataactcaaaatggtcactgtctttgtcaaacatt 33140546  T
Q  198 tgtcagattggtccttgactctattag-tgttttgtatttt 237  Q
    | ||||||||||||  |||||| |||| | |||||||||||    
T  33140545 tctcagattggtccccgactcttttagttattttgtatttt 33140505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 97 - 237
Target Start/End: Original strand, 26121950 - 26122091
Alignment:
Q  97 cgagtaaatcatcaaattgatccatgtctttgtacgaaattctcaaattggtctctgactctttgaataactcaaaatggtctctgtctttgtcaaatat 196  Q
    ||||||||| |||| |||| ||  ||||||| ||| |||||||||||||||||  ||||||| | |||||| ||||||||| |||||||||||||||| |    
T  26121950 cgagtaaattatcacattggtcactgtctttataccaaattctcaaattggtccatgactctattaataacacaaaatggtatctgtctttgtcaaatgt 26122049  T
Q  197 ttgtcagattggtccttgactctattag-tgttttgtatttt 237  Q
    || | |||||||||| |||||||||||| |||||||||||||    
T  26122050 ttcttagattggtccatgactctattagttgttttgtatttt 26122091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 98 - 225
Target Start/End: Complemental strand, 46164187 - 46164060
Alignment:
Q  98 gagtaaatcatcaaattgatccatgtctttgtacgaaattctcaaattggtctctgactctttgaataactcaaaatggtctctgtctttgtcaaatatt 197  Q
    ||||||| || |||||||  || ||||||||||  ||||||||||||| ||| |||||||| | ||||||||||||||||||||||||||||||||  ||    
T  46164187 gagtaaaccaccaaattggaccctgtctttgtatcaaattctcaaattagtccctgactctattaataactcaaaatggtctctgtctttgtcaaacgtt 46164088  T
Q  198 tgtcagattggtccttgactctattagt 225  Q
    | ||| |||||||| |||||||||||||    
T  46164087 tctcatattggtccctgactctattagt 46164060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 97 - 237
Target Start/End: Original strand, 26244857 - 26244998
Alignment:
Q  97 cgagtaaatcatcaaattgatccatgtctttgtacgaaattctcaaattggtctctgactctttgaataactcaaaatggtctctgtctttgtcaaatat 196  Q
    ||||||||| || |||||| ||  ||||||||||| ||||| | |||||||||  ||||||| | |||||  ||||||||||||||||||||||||||||    
T  26244857 cgagtaaattattaaattggtcagtgtctttgtaccaaatttttaaattggtccatgactctattaataaaacaaaatggtctctgtctttgtcaaatat 26244956  T
Q  197 ttgtcagattggtccttgactctatt-agtgttttgtatttt 237  Q
    || |||||||||||  |||||||||| | |||||||||||||    
T  26244957 ttatcagattggtcagtgactctattaattgttttgtatttt 26244998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 121 - 237
Target Start/End: Original strand, 26244184 - 26244301
Alignment:
Q  121 tgtctttgtacgaaattctcaaattggtctctgactctttgaataactcaaaatggtctctgtctttgtcaaatatttgtcagattggtccttgactcta 220  Q
    ||||||||||  ||||| | |||||| ||  ||||||| | |||||| |||||||||||||||||||||| ||| ||| |||||||||||||||||||||    
T  26244184 tgtctttgtaacaaatttttaaattgatccatgactctattaataacacaaaatggtctctgtctttgtccaatgtttctcagattggtccttgactcta 26244283  T
Q  221 ttag-tgttttgtatttt 237  Q
    |||| |||||||||||||    
T  26244284 ttagttgttttgtatttt 26244301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 97 - 237
Target Start/End: Original strand, 43031125 - 43031262
Alignment:
Q  97 cgagtaaatcatcaaattgatccatgtctttgtacgaaattctcaaattggtctctgactctttgaataactcaaaatggtctctgtctttgtcaaatat 196  Q
    |||||||||| | ||||||||||||| |||||||  ||||| | ||||||||| | |||||| | ||||||| |||||||||| ||    ||||||| ||    
T  43031125 cgagtaaatcgttaaattgatccatgactttgtatcaaatttttaaattggtcacggactctattaataacttaaaatggtctttg----tgtcaaacat 43031220  T
Q  197 ttgtcagattggtccttgactctattag-tgttttgtatttt 237  Q
    || ||||||||||||||||||||||||| ||||||| |||||    
T  43031221 ttatcagattggtccttgactctattagttgttttgcatttt 43031262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 98 - 225
Target Start/End: Complemental strand, 32808523 - 32808394
Alignment:
Q  98 gagtaaatcatcaaattgatccatgtctttgtacgaaattctcaaattggtctctgactctttga--ataactcaaaatggtctctgtctttgtcaaata 195  Q
    |||||||||| ||||||| ||  ||||||||||| ||| | |||||||||||  || |||| | |  ||||||||||||||||||| |||||||||||      
T  32808523 gagtaaatcaccaaattggtctctgtctttgtaccaaaatttcaaattggtccttggctctattatgataactcaaaatggtctctatctttgtcaaacg 32808424  T
Q  196 tttgtcagattggtccttgactctattagt 225  Q
    ||| |||||||||||| |||||||||||||    
T  32808423 tttctcagattggtccctgactctattagt 32808394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 98 - 237
Target Start/End: Complemental strand, 43804256 - 43804116
Alignment:
Q  98 gagtaaatcatcaaattgatccatgtctttgtacgaaattctcaaattggtctctgactctttgaataactcaaaatggtctctgtctttgtcaaatatt 197  Q
    |||||||||||||||||| ||  |||||||| || ||||| | |||||||||  | ||| | | ||||| |||||||||||  |||||||||||||| ||    
T  43804256 gagtaaatcatcaaattggtctttgtctttgcaccaaatttttaaattggtccttaactttattaataattcaaaatggtcattgtctttgtcaaatgtt 43804157  T
Q  198 tgtcagattggtccttgactctattag-tgttttgtatttt 237  Q
    | |||||||||||  ||| |||||||| |||||||||||||    
T  43804156 tctcagattggtctctgaatctattagttgttttgtatttt 43804116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 98 - 193
Target Start/End: Original strand, 39840636 - 39840731
Alignment:
Q  98 gagtaaatcatcaaattgatccatgtctttgtacgaaattctcaaattggtctctgactctttgaataactcaaaatggtctctgtctttgtcaaa 193  Q
    |||||||| ||||||||||||| |||||||||| |  ||||||||||| |||||||||||| | ||||  ||||||| |||  ||| |||||||||    
T  39840636 gagtaaattatcaaattgatccctgtctttgtaagtgattctcaaattagtctctgactctattaatatttcaaaatagtcattgtttttgtcaaa 39840731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 98 - 207
Target Start/End: Complemental strand, 12089359 - 12089251
Alignment:
Q  98 gagtaaatcatcaaattgatccatgtctttgtacgaaattctcaaattggtctctgactctttgaataactcaaaatggtctctgtctttgtcaaatatt 197  Q
    ||||||||||| |||||  ||||||| ||||||| ||||||| ||||||||   ||||||| | |||||||| ||| |||| || ||||||||||| |||    
T  12089359 gagtaaatcattaaatttgtccatgtttttgtaccaaattcttaaattggttcttgactctattaataactctaaa-ggtccctctctttgtcaaacatt 12089261  T
Q  198 tgtcagattg 207  Q
    | ||||||||    
T  12089260 tttcagattg 12089251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 121 - 212
Target Start/End: Complemental strand, 12015121 - 12015030
Alignment:
Q  121 tgtctttgtacgaaattctcaaattggtctctgactctttgaataactcaaaatggtctctgtctttgtcaaatatttgtcagattggtcct 212  Q
    ||||||||||| |||||||||| ||| || |  ||||| | ||||||||||||| |||||| | |||||| || |||| ||| |||||||||    
T  12015121 tgtctttgtaccaaattctcaatttgatccccaactctattaataactcaaaatagtctctatttttgtctaacatttctcaaattggtcct 12015030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 154
Target Start/End: Original strand, 27812176 - 27812238
Alignment:
Q  92 ttaaacgagtaaatcatcaaattgatccatgtctttgtacgaaattctcaaattggtctctga 154  Q
    |||||||||||||  |||||||||||| ||||||||||| |  ||||| ||||| ||||||||    
T  27812176 ttaaacgagtaaactatcaaattgatcaatgtctttgtaagtcattcttaaattagtctctga 27812238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 207
Target Start/End: Complemental strand, 3157956 - 3157919
Alignment:
Q  170 aaaatggtctctgtctttgtcaaatatttgtcagattg 207  Q
    |||||||||||||||||||||||| |||| ||||||||    
T  3157956 aaaatggtctctgtctttgtcaaacatttttcagattg 3157919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 193
Target Start/End: Original strand, 7565626 - 7565685
Alignment:
Q  133 aaattctcaaattggtctctgactctttgaataactcaaaatggtctctgtctttgtcaaa 193  Q
    ||||||||||||||||| | |||||| | |||||||||||||| | ||| |||||||||||    
T  7565626 aaattctcaaattggtccc-gactctattaataactcaaaatgatatctatctttgtcaaa 7565685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 120; Significance: 2e-61; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 98 - 336
Target Start/End: Complemental strand, 51103733 - 51103494
Alignment:
Q  98 gagtaaatcatcaaattgatccatgtctttgtacgaaattctcaaattggtctctgactctttgaataactcaaaatggtctctgtctttgtcaaatatt 197  Q
    ||||||| |||||||||| ||| | ||||||||| ||||| ||||||||||| |||||||| | ||||||||||||| |||||||||||| ||||| |||    
T  51103733 gagtaaaccatcaaattggtccctatctttgtaccaaattttcaaattggtcactgactctattaataactcaaaatagtctctgtctttatcaaacatt 51103634  T
Q  198 tgtcagattggtccttgactctattag-tgttttgtattttgagtgttaatgactcaatgtcttttggatattatttagtggctaatgacataatatttt 296  Q
    | ||| |||||| | ||| |||||||| ||||||||||||||||||||||||  |||||||||||||||||||||||||||| | | || |||||   ||    
T  51103633 tctcaaattggttcatgattctattagttgttttgtattttgagtgttaatggttcaatgtcttttggatattatttagtggttgaggatataatgcctt 51103534  T
Q  297 ttggatcttatttggtacgctaatgacttaaagtacaaaa 336  Q
    |||| ||||||||||||||||||||||||||| |||||||    
T  51103533 ttgggtcttatttggtacgctaatgacttaaaatacaaaa 51103494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 97 - 337
Target Start/End: Complemental strand, 35251755 - 35251514
Alignment:
Q  97 cgagtaaatcatcaaattgatccatgtctttgtacgaaattctcaaattggtctctgactctttgaataactcaaaatggtctctgtctttgtcaaatat 196  Q
    |||||||| || ||||||| ||| ||||||||||| |||||||||| |||||| || ||||| | ||||||| | |||||||| ||||||| |||||| |    
T  35251755 cgagtaaaccaccaaattggtccctgtctttgtaccaaattctcaatttggtccctaactctattaataacttataatggtctttgtctttctcaaatgt 35251656  T
Q  197 ttgtcagattggtccttgactctattagt-gttttgtattttgagtgttaatgactcaatgtcttttggatattatttagtggctaatgacataatattt 295  Q
    || |||||||||||  ||||||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |||| | |    
T  35251655 ttctcagattggtctctgactctattagttgttttttattttgagtgttaataactcaatgtcttttggatattatttagtggttaatgacgtaatgtct 35251556  T
Q  296 tttggatcttatttggtacgctaatgacttaaagtacaaaat 337  Q
    ||||||||||||||||||   |||||||||||| | ||||||    
T  35251555 tttggatcttatttggtatcttaatgacttaaaatgcaaaat 35251514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 98 - 336
Target Start/End: Original strand, 22886417 - 22886659
Alignment:
Q  98 gagtaaatcatcaaattgatccatgtctttgtacgaaattctcaaattggtctctgactcttt---gaataactcaaaatggtctctgtctttgtcaaat 194  Q
    |||||||||||||||||| | ||||| ||||||| ||||||| ||||||||  |||||| | |    ||||||||||||| ||   ||||||||||||||    
T  22886417 gagtaaatcatcaaattggttcatgtatttgtaccaaattcttaaattggttcctgactttattaataataactcaaaatagtacttgtctttgtcaaat 22886516  T
Q  195 atttgtcagattggtccttgactctattag-tgttttgtattttgagtgttaatgactcaatgtcttttggatattatttagtggctaatgacataatat 293  Q
     ||| ||||||| |||  | | |||||||| ||||||||||||| |||||| ||| |||||||||||||| |||||||||||||| |||||| ||||| |    
T  22886517 gtttctcagattagtctctaattctattagttgttttgtatttttagtgttcatggctcaatgtcttttgaatattatttagtggttaatgatataatgt 22886616  T
Q  294 tttttggatcttatttggtacgctaatgacttaaagtacaaaa 336  Q
     |||||||||||||||| |||| |||||||||||| |||||||    
T  22886617 gttttggatcttatttgttacgttaatgacttaaaatacaaaa 22886659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 98 - 336
Target Start/End: Original strand, 22938081 - 22938323
Alignment:
Q  98 gagtaaatcatcaaattgatccatgtctttgtacgaaattctcaaattggtctctgactcttt---gaataactcaaaatggtctctgtctttgtcaaat 194  Q
    |||||||||||||||||| | ||||| ||||||| ||||||| ||||||||  |||||| | |    ||||||||||||| ||   ||||||||||||||    
T  22938081 gagtaaatcatcaaattggttcatgtatttgtaccaaattcttaaattggttcctgactttattaataataactcaaaatagtacttgtctttgtcaaat 22938180  T
Q  195 atttgtcagattggtccttgactctattag-tgttttgtattttgagtgttaatgactcaatgtcttttggatattatttagtggctaatgacataatat 293  Q
     ||| ||||||| |||  | | |||||||| ||||||||||||| |||||| ||| |||||||||||||| |||||||||||||| |||||| ||||| |    
T  22938181 gtttctcagattagtctctaattctattagttgttttgtatttttagtgttcatggctcaatgtcttttgaatattatttagtggttaatgatataatgt 22938280  T
Q  294 tttttggatcttatttggtacgctaatgacttaaagtacaaaa 336  Q
     |||||||||||||||| |||| |||||||||||| |||||||    
T  22938281 gttttggatcttatttgttacgttaatgacttaaaatacaaaa 22938323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 123 - 328
Target Start/End: Complemental strand, 4892727 - 4892523
Alignment:
Q  123 tctttgtacgaaattctcaaattggtctctgactctttgaataactcaaaatggtctctgtctttgtcaaatatttgtcagattggtccttgactctatt 222  Q
    ||||||||| |||||||||| |||||| | |||||| |  | || |||||||||||| ||||||||| |||| ||| ||||||||||||  |||||||||    
T  4892727 tctttgtaccaaattctcaatttggtcccagactctatttacaattcaaaatggtctttgtctttgtgaaatgtttctcagattggtccacgactctatt 4892628  T
Q  223 ag-tgttttgtattttgagtgttaatgactcaatgtcttttggatattatttagtggctaatgacataatattttttggatcttatttggtacgctaatg 321  Q
    || ||||||||||||||||||||||||  ||| |||||||||||||||||||||||  ||||| |  ||| ||||||||||||||||||||||| || ||    
T  4892627 agttgttttgtattttgagtgttaatggttcactgtcttttggatattatttagtgtttaatggc--aatgttttttggatcttatttggtacgttagtg 4892530  T
Q  322 acttaaa 328  Q
     ||||||    
T  4892529 gcttaaa 4892523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 121 - 327
Target Start/End: Complemental strand, 4872890 - 4872684
Alignment:
Q  121 tgtctttgtacgaaattctcaaattggtctctgactctttgaataactcaaaatggtctctgtctttgtcaaatatttgtcagattggtccttgactcta 220  Q
    ||||||||||| ||||||| || ||| | | || |||| | ||||||| |||||| ||||||||||| | || | ||| ||| |||||||  ||||||||    
T  4872890 tgtctttgtaccaaattctaaatttgatttttgcctctattaataacttaaaatgatctctgtctttatgaagtgtttctcatattggtctctgactcta 4872791  T
Q  221 ttagt-gttttgtattttgagtgttaatgactcaatgtcttttggatattatttagtggctaatgacataatattttttggatcttatttggtacgctaa 319  Q
    ||||| ||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||| || ||| | ||||| ||||||||| ||||| |||    
T  4872790 ttagttgttttgtattttgggtgttaatggctcaatgtcttttgtatattatttagtggctaatggca-aatgtcttttgaatcttatttagtacgttaa 4872692  T
Q  320 tgacttaa 327  Q
    ||||||||    
T  4872691 tgacttaa 4872684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 125 - 336
Target Start/End: Complemental strand, 43049437 - 43049228
Alignment:
Q  125 tttgtacgaaattctcaaattggtctctgactctttgaataactcaaaatggtctctgtctttgtcaaatatttgtcagattggtccttgactctattag 224  Q
    ||||||| ||||||| |||||| ||||||| ||| | ||||| ||||||||||   ||| |||||||||  ||| |||||||| ||  ||||||||||||    
T  43049437 tttgtaccaaattcttaaattgatctctgagtctattaataattcaaaatggt---tgtttttgtcaaacgtttctcagattgatctctgactctattag 43049341  T
Q  225 t-gttttgtattttgagtgttaatgactcaatgtcttttggatattatttagtggctaatgacataatattttttggatcttatttggtacgctaatgac 323  Q
    | |||||||||||| | |||||||   |||||||||||||||||||||||||||| ||||||||||||   |||| ||||||||||| |||  |||||||    
T  43049340 ttgttttgtatttttaatgttaatagttcaatgtcttttggatattatttagtggttaatgacataatgccttttagatcttatttgatacattaatgac 43049241  T
Q  324 ttaaagtacaaaa 336  Q
    ||||| |||||||    
T  43049240 ttaaaatacaaaa 43049228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 125 - 336
Target Start/End: Complemental strand, 54511654 - 54511445
Alignment:
Q  125 tttgtacgaaattctcaaattggtctctgactctttgaataactcaaaatggtctctgtctttgtcaaatatttgtcagattggtccttgactctattag 224  Q
    ||||||| ||||||| |||||||||   || ||| | ||||| |||||||||||| | |||| ||||||  ||| | | |||||||| ||||||||||||    
T  54511654 tttgtaccaaattcttaaattggtccacgaatctattaataattcaaaatggtctatatcttagtcaaacgttttttaaattggtccctgactctattag 54511555  T
Q  225 -tgttttgtattttgagtgttaatgactcaatgtcttttggatattatttagtggctaatgacataatattttttggatcttatttggtacgctaatgac 323  Q
     ||||||||||||||||| ||| |   |||| ||||||||||||||||||||| | |||||| ||||||| ||||||||||||| || |||| ||||||     
T  54511554 ctgttttgtattttgagtattagt---tcaacgtcttttggatattatttagtcgttaatgatataatatcttttggatcttatctgatacgttaatgat 54511458  T
Q  324 ttaaagtacaaaa 336  Q
    ||||| |||||||    
T  54511457 ttaaaatacaaaa 54511445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 182 - 336
Target Start/End: Complemental strand, 34932341 - 34932186
Alignment:
Q  182 gtctttgtcaaatatttgtcagattggtccttgactctattagtgt-tttgtattttgagtgttaatgactcaatgtcttttggatattatttagtggct 280  Q
    ||||||||||||  | | ||| |||||||| |||||||||||||   ||| ||||||||||||||||| |||||||||||||| |||||||||||||| |    
T  34932341 gtctttgtcaaacttgtctcaaattggtccatgactctattagttactttatattttgagtgttaatggctcaatgtcttttgaatattatttagtggtt 34932242  T
Q  281 aatgacataatattttttggatcttatttggtacgctaatgacttaaagtacaaaa 336  Q
    ||||| |||||   |||||||||||||||| |||  |||||| ||||| |||||||    
T  34932241 aatgatataatgccttttggatcttatttgatacattaatgagttaaaatacaaaa 34932186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 98 - 328
Target Start/End: Original strand, 45302323 - 45302554
Alignment:
Q  98 gagtaaatcatcaaattgatccatgtctttgtacgaaattctcaaattggtctctgactctttgaataactcaaaatggtctctgtctttgtcaaatatt 197  Q
    ||||||| |||||||||||||| | ||||| ||  ||||||| || ||| || ||||||||   ||||| |||||||  || |||||||||| |||| ||    
T  45302323 gagtaaaccatcaaattgatccctctctttatatcaaattcttaatttgatccctgactctactaataattcaaaatattcactgtctttgtgaaatgtt 45302422  T
Q  198 tgtcagattggtccttgactctattagt-gttttgtattttgagtgttaatgactcaatgtcttttggatattatttagtggctaatgacataatatttt 296  Q
    | ||| |||||||  | ||||||||||| ||||||||||||||| ||||||    || |||||||||||||||||| ||||| ||||| ||||||   ||    
T  45302423 tctcaaattggtctctaactctattagttgttttgtattttgagcgttaatagtccagtgtcttttggatattattcagtggttaatgtcataatgcatt 45302522  T
Q  297 ttggatcttatttggtacgctaatgacttaaa 328  Q
    ||| |||||||||| || | ||||||||||||    
T  45302523 ttgaatcttatttgatatgttaatgacttaaa 45302554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 97 - 237
Target Start/End: Original strand, 4892384 - 4892525
Alignment:
Q  97 cgagtaaatcatcaaattgatccatgtctttgtacgaaattctcaaattggtctctgactctttgaataactcaaaatggtctctgtctttgtcaaatat 196  Q
    |||||||| || ||||||| ||  ||||||||||| ||||||| ||||| ||||| |||||| | ||||||||||||||||  |||||||||||||| ||    
T  4892384 cgagtaaaccaccaaattggtctctgtctttgtaccaaattcttaaattagtctccgactctattaataactcaaaatggttactgtctttgtcaaacat 4892483  T
Q  197 ttgtcagattggtccttgactctattag-tgttttgtatttt 237  Q
    || | |||||||||| |||||||||||| ||||||| |||||    
T  4892484 ttcttagattggtccctgactctattagttgttttgcatttt 4892525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 97 - 225
Target Start/End: Original strand, 4872545 - 4872672
Alignment:
Q  97 cgagtaaatcatcaaattgatccatgtctttgtacgaaattctcaaattggtctctgactctttgaataactcaaaatggtctctgtctttgtcaaatat 196  Q
    |||||||| || |||| |||||  ||||||||||| ||||||| |||||| ||||| ||||| | |||||||||||||| |||||||||||||||||  |    
T  4872545 cgagtaaaccaccaaactgatctttgtctttgtaccaaattcttaaattgatctctaactctattaataactcaaaatgatctctgtctttgtcaaacgt 4872644  T
Q  197 ttgtcagattggtccttgactctattagt 225  Q
    || | |||||| ||| |||||||||||||    
T  4872645 ttct-agattgatccctgactctattagt 4872672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 227 - 337
Target Start/End: Original strand, 40681566 - 40681676
Alignment:
Q  227 ttttgtattttgagtgttaatgactcaatgtcttttggatattatttagtggctaatgacataatattttttggatcttatttggtacgctaatgactta 326  Q
    |||||||||||||||||||||  ||||||||||| ||||||||||||| |||  | ||||||||| | ||||| |||||| ||| |||  ||||||||||    
T  40681566 ttttgtattttgagtgttaatagctcaatgtcttatggatattatttaatggtcagtgacataatgtcttttgaatcttaattgatacattaatgactta 40681665  T
Q  327 aagtacaaaat 337  Q
    || ||||||||    
T  40681666 aaatacaaaat 40681676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 97 - 237
Target Start/End: Original strand, 51103363 - 51103504
Alignment:
Q  97 cgagtaaatcatcaaattgatccatgtctttgtacgaaattctcaaattggtctctgactctttgaataactcaaaatggtctctgtctttgtcaaatat 196  Q
    |||||||||||  |||||| ||  ||||||||||| ||||||||||||||||| |||||||| | ||||| |||||||||||  || ||||||||||  |    
T  51103363 cgagtaaatcactaaattggtctctgtctttgtaccaaattctcaaattggtccctgactctattaataattcaaaatggtcattgcctttgtcaaaagt 51103462  T
Q  197 ttgtcagattggtccttgactctattag-tgttttgtatttt 237  Q
    || || |||||||| |  |||||||||| | |||||||||||    
T  51103463 ttctcggattggtcttcaactctattagttcttttgtatttt 51103504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 98 - 226
Target Start/End: Original strand, 39864090 - 39864218
Alignment:
Q  98 gagtaaatcatcaaattgatccatgtctttgtacgaaattctcaaattggtctctgactctttgaataactcaaaatggtctctgtctttgtcaaatatt 197  Q
    ||||||||||| |||||| ||  ||||||||||| ||||| | ||||||||| | |||||| | |||||||||||||| || ||||||||||||||  ||    
T  39864090 gagtaaatcattaaattggtctctgtctttgtaccaaatttttaaattggtccccgactctattaataactcaaaatgatccctgtctttgtcaaacttt 39864189  T
Q  198 tgtcagattggtccttgactctattagtg 226  Q
    | ||| |||||||  || |||||||||||    
T  39864190 tctcatattggtctctgtctctattagtg 39864218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 94 - 180
Target Start/End: Original strand, 35004468 - 35004554
Alignment:
Q  94 aaacgagtaaatcatcaaattgatccatgtctttgtacgaaattctcaaattggtctctgactctttgaataactcaaaatggtctc 180  Q
    |||||||||||||| ||| || |||| ||||||||||| ||||||||| ||||||| |||||||| | ||||||||||||| |||||    
T  35004468 aaacgagtaaatcaccaatttaatccctgtctttgtaccaaattctcatattggtccctgactctattaataactcaaaatagtctc 35004554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 217 - 325
Target Start/End: Original strand, 42077140 - 42077249
Alignment:
Q  217 tctattagt-gttttgtattttgagtgttaatgactcaatgtcttttggatattatttagtggctaatgacataatattttttggatcttatttggtacg 315  Q
    ||||||||| ||||||||||||||||| ||||| |||||||| ||||| |||||||||||||  ||||  ||||||   |||| |||||||||| ||||     
T  42077140 tctattagttgttttgtattttgagtgataatggctcaatgttttttgaatattatttagtgattaatagcataatgcattttcgatcttatttagtaca 42077239  T
Q  316 ctaatgactt 325  Q
     |||||||||    
T  42077240 ttaatgactt 42077249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 162 - 237
Target Start/End: Complemental strand, 45302628 - 45302552
Alignment:
Q  162 aataactcaaaatggtctctgtctttgtcaaatatttgtcagattggtccttgactctattag-tgttttgtatttt 237  Q
    ||||| |||||||||| ||||||||||||||| |||| ||| |||||||| |||||||||||| ||||||| |||||    
T  45302628 aataattcaaaatggtttctgtctttgtcaaacatttttcatattggtccctgactctattagttgttttgcatttt 45302552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 123 - 237
Target Start/End: Complemental strand, 22886764 - 22886649
Alignment:
Q  123 tctttgtacgaaattctcaaattggtctctgactctttgaataactcaaaatggtctctgtctttgtcaaatatttgtcagattggtccttgactctatt 222  Q
    ||||||||  ||||| | |||||||||| ||||||| | ||||| ||||||| || ||| |||||||||||  ||| | ||||||||| | |||||||||    
T  22886764 tctttgtatcaaatttttaaattggtctttgactctattaataattcaaaatagtttctatctttgtcaaacgttttttagattggtcttcgactctatt 22886665  T
Q  223 a-gtgttttgtatttt 237  Q
    |  |||||||||||||    
T  22886664 acttgttttgtatttt 22886649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 123 - 237
Target Start/End: Complemental strand, 22938428 - 22938313
Alignment:
Q  123 tctttgtacgaaattctcaaattggtctctgactctttgaataactcaaaatggtctctgtctttgtcaaatatttgtcagattggtccttgactctatt 222  Q
    ||||||||  ||||| | |||||||||| ||||||| | ||||| ||||||| || ||| |||||||||||  ||| | ||||||||| | |||||||||    
T  22938428 tctttgtatcaaatttttaaattggtctttgactctattaataattcaaaatagtttctatctttgtcaaacgttttttagattggtcttcgactctatt 22938329  T
Q  223 a-gtgttttgtatttt 237  Q
    |  |||||||||||||    
T  22938328 acttgttttgtatttt 22938313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 107 - 178
Target Start/End: Complemental strand, 40681791 - 40681720
Alignment:
Q  107 atcaaattgatccatgtctttgtacgaaattctcaaattggtctctgactctttgaataactcaaaatggtc 178  Q
    ||||||||| | |||||||||||||  |||||||||||||||| |||| ||| | ||||||| |||||||||    
T  40681791 atcaaattggttcatgtctttgtaccgaattctcaaattggtccctgattctattaataacttaaaatggtc 40681720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 124 - 225
Target Start/End: Original strand, 35251411 - 35251512
Alignment:
Q  124 ctttgtacgaaattctcaaattggtctctgactctttgaataactcaaaatggtctctgtctttgtcaaatatttgtcagattggtccttgactctatta 223  Q
    |||||||| ||||| | |||||||| |  || ||| | |||||||||||||||| | |||||||||||||||||| | |||||| ||  |||| ||||||    
T  35251411 ctttgtactaaatttttaaattggtttaggattctattaataactcaaaatggtttatgtctttgtcaaatattttttagattgatctctgacgctatta 35251510  T
Q  224 gt 225  Q
    ||    
T  35251511 gt 35251512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 179 - 239
Target Start/End: Complemental strand, 42077310 - 42077249
Alignment:
Q  179 tctgtctttgtcaaatatttgtcagattggtccttgactctattag-tgttttgtattttga 239  Q
    |||||||||||||||  ||| ||||||||||| | ||||||||||| |||||||||||||||    
T  42077310 tctgtctttgtcaaacgtttttcagattggtcatcgactctattagttgttttgtattttga 42077249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 135 - 198
Target Start/End: Original strand, 44137403 - 44137466
Alignment:
Q  135 attctcaaattggtctctgactctttgaataactcaaaatggtctctgtctttgtcaaatattt 198  Q
    ||||||||||| |||||||||||| | ||||  ||||||| || ||||||||||||||| ||||    
T  44137403 attctcaaattagtctctgactctattaatatttcaaaatagtatctgtctttgtcaaaaattt 44137466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 210
Target Start/End: Original strand, 34932055 - 34932168
Alignment:
Q  98 gagtaaatcatcaaattgatccatgtctttgtacgaaattctcaaattggtctctgactcttt---gaataactcaaaatggtctctgtctttgtcaaat 194  Q
    |||||||||| ||||||| ||||||||||| |||| ||| |  ||| |||||||||||| | |    |||||||||||||||  | ||||||||||||||    
T  34932055 gagtaaatcaccaaattggtccatgtctttatacgtaatacctaaactggtctctgactatattaataataactcaaaatgg--tgtgtctttgtcaaat 34932152  T
Q  195 atttgtcagattggtc 210  Q
     ||| ||| |||||||    
T  34932153 gtttatcatattggtc 34932168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 150
Target Start/End: Complemental strand, 13432855 - 13432803
Alignment:
Q  98 gagtaaatcatcaaattgatccatgtctttgtacgaaattctcaaattggtct 150  Q
    |||||||||| ||||||||||| |||||||||| |  ||||||||||| ||||    
T  13432855 gagtaaatcaccaaattgatccctgtctttgtaagtcattctcaaattagtct 13432803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 119; Significance: 9e-61; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 99 - 336
Target Start/End: Original strand, 36150733 - 36150970
Alignment:
Q  99 agtaaatcatcaaattgatccatgtctttgtacgaaattctcaaattggtctctgactctttgaataactcaaaatggtctctgtcttt-gtcaaatatt 197  Q
    ||||||||| ||||||| ||| | ||| ||||| ||||||||||||||||| || ||||| ||||||||||||||||||   ||||||| ||||||| ||    
T  36150733 agtaaatcaccaaattggtccctatctatgtactaaattctcaaattggtccctaactctatgaataactcaaaatggttcatgtcttttgtcaaatgtt 36150832  T
Q  198 tgtcagattggtccttgactctattagtgttttgtattttgagtgttaatgactcaatgtcttttggatattatttagtggctaatgacataatattttt 297  Q
    | ||||||| |||  || ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||| ||||||  ||||    
T  36150833 tctcagatttgtcactggctctattagtgttttgtattt-gagtgttattgactcaatgtcttttggatattatttagtggttaatggcataatgctttt 36150931  T
Q  298 tggatcttatttggtacgctaatgacttaaagtacaaaa 336  Q
    |||||||||||||||||  |||||||||||| |||||||    
T  36150932 tggatcttatttggtacattaatgacttaaaatacaaaa 36150970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 99 - 336
Target Start/End: Complemental strand, 13932927 - 13932689
Alignment:
Q  99 agtaaatcatcaaattgatccatgtctttgtacgaaattctcaaattggtctct-gactctttgaataactcaaaatggtctctgtctttgtcaaatatt 197  Q
    |||||| |||||||||| ||| | | ||||||| |||||||||||||| | ||| |||||| | |||||||||||||||||  |||||||||||||  ||    
T  13932927 agtaaaccatcaaattggtccctatttttgtactaaattctcaaattgat-tctcgactctattaataactcaaaatggtcaatgtctttgtcaaacgtt 13932829  T
Q  198 tgtcagattggtccttgactctattagtg-ttttgtattttgagtgttaatgactcaatgtcttttggatattatttagtggctaatgacataatatttt 296  Q
    | |||||||| |||  ||||||||||||  |||||||||||||||||||||| |||||| ||||||  ||| |||||||||| |||||||||||||| ||    
T  13932828 tctcagattgatccacgactctattagttattttgtattttgagtgttaatggctcaatatctttttaatactatttagtggttaatgacataatatatt 13932729  T
Q  297 ttggatcttatttggtacgctaatgacttaaagtacaaaa 336  Q
    ||| ||||||||||||||| |||||||||||| |||||||    
T  13932728 ttgaatcttatttggtacgataatgacttaaaatacaaaa 13932689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 95 - 336
Target Start/End: Complemental strand, 8999901 - 8999656
Alignment:
Q  95 aacgagtaaatcatcaaattgatccatgtctttgtacgaaattctcaaattggtctctgactctttgaataactcaaaatggtctctgtctttgtcaaat 194  Q
    |||||||||| ||||||||||||   ||||||||||  |||||||||| ||||||| ||||||  | ||| | |||||||||||  || || | ||||||    
T  8999901 aacgagtaaaccatcaaattgattattgtctttgtatcaaattctcaatttggtctgtgactccattaatgattcaaaatggtccatgcctctatcaaat 8999802  T
Q  195 atttgtcagattggtccttgactctattagt----gttttgtattttgagtgttaatgactcaatgtcttttggatattatttagtggctaatgacataa 290  Q
      || | |||||| ||| |||||||||||||    ||||| ||||| ||  |||||||  |||||||||||||||||||||||| ||| |||||  ||||    
T  8999801 gcttctgagattgatccctgactctattagttgttgttttatatttcgaacgttaatggttcaatgtcttttggatattatttaatggttaatgttataa 8999702  T
Q  291 tattttttggatcttatttggtacgctaatgacttaaagtacaaaa 336  Q
    ||  |||||||| |||||||||||| |||||| || || |||||||    
T  8999701 taccttttggattttatttggtacggtaatgatttgaaatacaaaa 8999656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 98 - 237
Target Start/End: Complemental strand, 36151100 - 36150960
Alignment:
Q  98 gagtaaatcatcaaattgatccatgtctttgtacgaaattctcaaattggtctctgactctttgaataactcaaaatggtctctgtctttgtcaaatatt 197  Q
    |||||||||| || |||| ||| ||| ||||||| ||||||||||||||||  || ||||| ||||||||||||||||||||||||||||||||||  ||    
T  36151100 gagtaaatcaccatattggtccttgtatttgtaccaaattctcaaattggttcctaactctatgaataactcaaaatggtctctgtctttgtcaaacgtt 36151001  T
Q  198 tgtcagattggtccttgactctattag-tgttttgtatttt 237  Q
    | ||| |||| |||  |||||| |||| |||||||||||||    
T  36151000 tctcaaattgatccccgactctcttagttgttttgtatttt 36150960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 225 - 336
Target Start/End: Original strand, 20730458 - 20730572
Alignment:
Q  225 tgttttgtattttgagtgttaatgactcaatgtctt---ttggatattatttagtggctaatgacataatattttttggatcttatttggtacgctaatg 321  Q
    ||||||||||||||||||| ||||  ||||||||||   |||||||||||||||||| ||||||||||||   || ||||||||||||  |||| |||||    
T  20730458 tgttttgtattttgagtgtcaatggttcaatgtcttcttttggatattatttagtggttaatgacataatgcattatggatcttatttaatacgttaatg 20730557  T
Q  322 acttaaagtacaaaa 336  Q
     |||||| |||||||    
T  20730558 gcttaaaatacaaaa 20730572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 97 - 193
Target Start/End: Original strand, 17990742 - 17990838
Alignment:
Q  97 cgagtaaatcatcaaattgatccatgtctttgtacgaaattctcaaattggtctctgactctttgaataactcaaaatggtctctgtctttgtcaaa 193  Q
    |||||||| || ||||||| ||  |||||| |||  |||||||||| |||||| |||||||| | |||||||||||||||||| ||| |||||||||    
T  17990742 cgagtaaaccaccaaattggtcattgtcttcgtatcaaattctcaatttggtccctgactctattaataactcaaaatggtctttgtttttgtcaaa 17990838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 123 - 198
Target Start/End: Original strand, 22843767 - 22843842
Alignment:
Q  123 tctttgtacgaaattctcaaattggtctctgactctttgaataactcaaaatggtctctgtctttgtcaaatattt 198  Q
    ||||||||| ||||| |||| |||||| || | ||| | ||||| |||||||||||||||||||||||||||||||    
T  22843767 tctttgtaccaaattttcaatttggtccctcattctattaataattcaaaatggtctctgtctttgtcaaatattt 22843842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 98 - 165
Target Start/End: Complemental strand, 32508974 - 32508907
Alignment:
Q  98 gagtaaatcatcaaattgatccatgtctttgtacgaaattctcaaattggtctctgactctttgaata 165  Q
    |||||||||||||||||||||||||| |||||| |  | ||||||||| |||| ||||||||| ||||    
T  32508974 gagtaaatcatcaaattgatccatgtttttgtaagtcactctcaaattagtctatgactctttaaata 32508907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 92 - 156
Target Start/End: Complemental strand, 11275896 - 11275832
Alignment:
Q  92 ttaaacgagtaaatcatcaaattgatccatgtctttgtacgaaattctcaaattggtctctgact 156  Q
    ||||| ||||||| ||| |||||| ||||||||||||||    ||||||||||| ||||||||||    
T  11275896 ttaaatgagtaaaccattaaattgttccatgtctttgtaaatcattctcaaattagtctctgact 11275832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 194
Target Start/End: Complemental strand, 22843969 - 22843902
Alignment:
Q  126 ttgtacgaaattctcaaattggtctctgactctttgaataactcaaaatggtctctgtctttgtcaaat 194  Q
    |||||| |||||||||||| ||| || |||||| | ||||||| |||||||||  ||||||||||||||    
T  22843969 ttgtaccaaattctcaaatcggtttc-gactctattaataacttaaaatggtccatgtctttgtcaaat 22843902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 117; Significance: 1e-59; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 141 - 328
Target Start/End: Complemental strand, 27134178 - 27133990
Alignment:
Q  141 aaattggtctctgactctttgaataactcaaaatggtctctgtctttgtcaaatatttgtcagattggtccttgactctattagt-gttttgtattttga 239  Q
    |||||||||| ||||||| | ||||||||||||||||   |||||||||||||| ||| |||||||||||  ||||||||||||| ||||||||||||||    
T  27134178 aaattggtctttgactctattaataactcaaaatggttcatgtctttgtcaaatgtttctcagattggtctctgactctattagttgttttgtattttga 27134079  T
Q  240 gtgttaatgactcaatgtcttttggatattatttagtggctaatgacataatattttttggatcttatttggtacgctaatgacttaaa 328  Q
    |||||||||||||||||| |||||||||||||||||||| ||||| |||||| | ||||||||||||||||||||| ||||||||||||    
T  27134078 gtgttaatgactcaatgtattttggatattatttagtggttaatggcataatgtcttttggatcttatttggtacgttaatgacttaaa 27133990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 98 - 336
Target Start/End: Complemental strand, 4067246 - 4067009
Alignment:
Q  98 gagtaaatcatcaaattgatccatgtctttgtacgaaattctcaaattggtctctgactctttgaataactcaaaatggtctctgtctttgtcaaatatt 197  Q
    ||||||||||||||||||||||   ||||||||| ||||| | |||||||||  ||||||| | ||||||||||||||||| | ||||||||||||| ||    
T  4067246 gagtaaatcatcaaattgatcccc-tctttgtaccaaatttttaaattggtcattgactctattaataactcaaaatggtcac-gtctttgtcaaatgtt 4067149  T
Q  198 tgtcagattggtccttgactctattagt-gttttgtattttgagtgttaatgactcaatgtcttttggatattatttagtggctaatgacataatatttt 296  Q
    | |||||||||||| ||||||| ||| | ||||| ||||||||||||||||| |||||||||||||||||||||||| || |  ||||||||||| | ||    
T  4067148 tctcagattggtccatgactctgttaattgttttttattttgagtgttaatggctcaatgtcttttggatattatttcgtagtaaatgacataatgtctt 4067049  T
Q  297 ttggatcttatttggtacgctaatgacttaaagtacaaaa 336  Q
    ||||||||||||||||||| |||||||||||| |||||||    
T  4067048 ttggatcttatttggtacgttaatgacttaaaatacaaaa 4067009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 98 - 336
Target Start/End: Complemental strand, 33321404 - 33321165
Alignment:
Q  98 gagtaaatcatcaaattgatccatgtctttgtacgaaattctcaaattggtctctgactctttgaataactcaaaatggtctctgtctttgtcaaatatt 197  Q
    |||||||||||||| |||| |  ||| ||||||| ||||| | |||||||| ||||||||| | ||||||||||||| |||   ||||||||||||  ||    
T  33321404 gagtaaatcatcaatttgacctctgtttttgtaccaaatttttaaattggtttctgactctattaataactcaaaatagtccacgtctttgtcaaacttt 33321305  T
Q  198 tgtcagattggtccttgactctattagt-gttttgtattttgagtgttaatgactcaatgtcttttggatattatttagtggctaatgacataatatttt 296  Q
    | ||| ||||||| ||| |||||||| | ||||||||||||||||| |||||||||| |||||||||||||||||||| | | ||||||||| ||   ||    
T  33321304 tttcaaattggtcattgtctctattatttgttttgtattttgagtgataatgactcattgtcttttggatattatttaatcgttaatgacatgatgcctt 33321205  T
Q  297 ttggatcttatttggtacgctaatgacttaaagtacaaaa 336  Q
    ||| || |||||||||||| |||||||||||| |||||||    
T  33321204 ttgaattttatttggtacgttaatgacttaaaatacaaaa 33321165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 98 - 336
Target Start/End: Original strand, 23329296 - 23329535
Alignment:
Q  98 gagtaaatcatcaaattgatccatgtctttgtacgaaattctcaaattggtctctgactctttgaataactcaaaatggtctctgtctttgtcaaatatt 197  Q
    ||||||| |||||||||| | | | ||||||||  |||||||||| |||||  |||||||| | |||| ||| ||||||||||||| |||||||||  ||    
T  23329296 gagtaaaccatcaaattggttcttatctttgtatcaaattctcaatttggttcctgactctattaatacctcgaaatggtctctgtgtttgtcaaacgtt 23329395  T
Q  198 tgtcagattggtccttgactctattagt-gttttgtattttgagtgttaatgactcaatgtcttttggatattatttagtggctaatgacataatatttt 296  Q
      |||||||||||  | ||| ||||||| |||||||||||| |||||||||   ||||||||||| | |||||||||||||| ||||||||||||   ||    
T  23329396 actcagattggtctctaactttattagttgttttgtatttttagtgttaatagttcaatgtctttagaatattatttagtggttaatgacataatgcctt 23329495  T
Q  297 ttggatcttatttggtacgctaatgacttaaagtacaaaa 336  Q
    ||||||||||||||||||  |||||| ||||| |||||||    
T  23329496 ttggatcttatttggtacattaatgatttaaaatacaaaa 23329535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 107 - 328
Target Start/End: Original strand, 49784530 - 49784750
Alignment:
Q  107 atcaaattgatccatgtctttgtacgaaattctcaaattggtctctgactctttgaataactcaaaatggtctctgtctttgtcaaatatttgtcagatt 206  Q
    ||||||||  ||| ||||||||||| ||||| |||| || ||| |||||||| | |||||||||||||||| |  ||||||||||| | ||| |||||||    
T  49784530 atcaaattagtccctgtctttgtactaaattttcaatttagtccctgactctattaataactcaaaatggtat--gtctttgtcaagtgtttctcagatt 49784627  T
Q  207 ggtccttgactctattagt-gttttgtattttgagtgttaatgactcaatgtcttttggatattatttagtggctaatgacataatattttttggatctt 305  Q
    ||||| |||||| |||||| ||||||||||||||||||| |||  ||||||| ||||| ||||||| |||||| ||||| |||||| | ||||| |||||    
T  49784628 ggtccctgactcaattagttgttttgtattttgagtgttgatggttcaatgtgttttgaatattatgtagtggttaatggcataatgtcttttgaatctt 49784727  T
Q  306 atttggtacgctaatgacttaaa 328  Q
    |||  ||||| ||||||||||||    
T  49784728 attaagtacgttaatgacttaaa 49784750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 106 - 337
Target Start/End: Complemental strand, 34535655 - 34535418
Alignment:
Q  106 catcaaattgatccatgtctttgtacgaaattctcaaattggtctctgactctttgaataactcaaaatggtctctgtctttgtcaaatatttgtcagat 205  Q
    |||||||||| ||| | | ||||||| ||||| |||| |||||| |||||| | | |||||||||||||| |   | ||||| ||| || ||| ||||||    
T  34535655 catcaaattggtccctctatttgtactaaattttcaatttggtccctgactttattaataactcaaaatgattcttatctttatcatatgtttctcagat 34535556  T
Q  206 tggtccttgactctattagt------gttttgtattttgagtgttaatgactcaatgtcttttggatattatttagtggctaatgacataatattttttg 299  Q
    |||||  |||||||||||||      ||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||| || ||| ||||||    
T  34535555 tggtcgctgactctattagtttagttgttttgtattttgagtgttaatggctcaatgtcttttgaatattatttagtggttaatgatatgatactttttg 34535456  T
Q  300 gatcttatttggtacgctaatgacttaaagtacaaaat 337  Q
     ||||||||||||||| |||||| ||||| | ||||||    
T  34535455 aatcttatttggtacgttaatgatttaaaatgcaaaat 34535418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 121 - 278
Target Start/End: Original strand, 38208279 - 38208437
Alignment:
Q  121 tgtctttgtacgaaattctcaaattggtctctgactctttgaataactcaaaatggtctctgtctttgtcaaatatttgtcagattggtccttgactcta 220  Q
    ||||||| ||| ||||| | || ||||||||||||||| |  ||||||||||||||| | | |||||||||||||||| ||||||||||| ||||| |||    
T  38208279 tgtctttatactaaatttttaatttggtctctgactctattgataactcaaaatggtttatatctttgtcaaatatttctcagattggtcattgacacta 38208378  T
Q  221 tt-agtgttttgtattttgagtgttaatgactcaatgtcttttggatattatttagtgg 278  Q
    || | | ||||||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  38208379 ttaattattttgtattttgagtgtaaatgactcaatgtctcttggatattatttagtgg 38208437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 139 - 237
Target Start/End: Original strand, 4066923 - 4067019
Alignment:
Q  139 tcaaattggtctctgactctttgaataactcaaaatggtctctgtctttgtcaaatatttgtcagattggtccttgactctattagtgttttgtatttt 237  Q
    ||||||||||| |||||||| | ||||| ||||||||||| ||||||||||||||  ||| ||||||||||| | |||||||| |  ||||||||||||    
T  4066923 tcaaattggtccctgactctattaataattcaaaatggtcactgtctttgtcaaaagtttctcagattggtcatcgactctataa--gttttgtatttt 4067019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 110 - 193
Target Start/End: Original strand, 27133831 - 27133914
Alignment:
Q  110 aaattgatccatgtctttgtacgaaattctcaaattggtctctgactctttgaataactcaaaatggtctctgtctttgtcaaa 193  Q
    |||||| ||| ||||||||||| ||||||| |||||| || |||||| | | |||||||||||||||||| |||||||||||||    
T  27133831 aaattggtccctgtctttgtaccaaattcttaaattgatccctgactttattaataactcaaaatggtctatgtctttgtcaaa 27133914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 95 - 174
Target Start/End: Complemental strand, 49784895 - 49784816
Alignment:
Q  95 aacgagtaaatcatcaaattgatccatgtctttgtacgaaattctcaaattggtctctgactctttgaataactcaaaat 174  Q
    |||||||||| || ||||||| ||||||||||||||| || |||||| ||||||| |||||||| | |||||||||||||    
T  49784895 aacgagtaaaccaccaaattggtccatgtctttgtaccaagttctcatattggtccctgactctattaataactcaaaat 49784816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 134 - 237
Target Start/End: Original strand, 33321071 - 33321175
Alignment:
Q  134 aattctcaaattggtctctgactctttgaataactcaaaatggtctctgtctttgtcaaatatttgtcagattggtccttgactctattag-tgttttgt 232  Q
    ||||||||||||||||  ||||||| | ||||| | |||||| ||||||||||||||||| |||| | | |||| |||  ||||||||||| ||||||||    
T  33321071 aattctcaaattggtcattgactctattaataatttaaaatgatctctgtctttgtcaaacatttcttatattgatccccgactctattagttgttttgt 33321170  T
Q  233 atttt 237  Q
    |||||    
T  33321171 atttt 33321175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 98 - 193
Target Start/End: Complemental strand, 7481290 - 7481195
Alignment:
Q  98 gagtaaatcatcaaattgatccatgtctttgtacgaaattctcaaattggtctctgactctttgaataactcaaaatggtctctgtctttgtcaaa 193  Q
    ||||||| |||||||||| ||  ||| ||||||  ||||||||||| ||||||  |||||| | ||||||| |||||||||||| |||||||||||    
T  7481290 gagtaaaccatcaaattggtctctgtatttgtaacaaattctcaaactggtcttcgactctattaataacttaaaatggtctctatctttgtcaaa 7481195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 194
Target Start/End: Original strand, 20993852 - 20993950
Alignment:
Q  96 acgagtaaatcatcaaattgatccatgtctttgtacgaaattctcaaattggtctctgactctttgaataactcaaaatggtctctgtctttgtcaaat 194  Q
    |||||||||||||||||||||||  | | ||| ||  |||||||||| ||||||  ||| ||| | ||||||||||||| || || |||||||||||||    
T  20993852 acgagtaaatcatcaaattgatctctatttttatataaaattctcaacttggtccatgattctattaataactcaaaatagtttccgtctttgtcaaat 20993950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 145
Target Start/End: Original strand, 31063232 - 31063276
Alignment:
Q  101 taaatcatcaaattgatccatgtctttgtacgaaattctcaaatt 145  Q
    |||||||||||||||||| ||||||||||| | ||||||||||||    
T  31063232 taaatcatcaaattgatcgatgtctttgtaagtaattctcaaatt 31063276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 96 - 187
Target Start/End: Complemental strand, 2464280 - 2464189
Alignment:
Q  96 acgagtaaatcatcaaattgatccatgtctttgtacgaaattctcaaattggtctctgactctttgaataactcaaaatggtctctgtcttt 187  Q
    |||||||||||| ||||||  |   ||| ||||||| |||||||||||||||||  ||||||| | ||||||||||||| |||  |||||||    
T  2464280 acgagtaaatcaccaaattagtttttgtatttgtaccaaattctcaaattggtccatgactctattaataactcaaaatagtcattgtcttt 2464189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 98 - 193
Target Start/End: Original strand, 28504688 - 28504783
Alignment:
Q  98 gagtaaatcatcaaattgatccatgtctttgtacgaaattctcaaattggtctctgactctttgaataactcaaaatggtctctgtctttgtcaaa 193  Q
    |||||||||||||||||  ||  |||||||||| |  ||||||||||| |||| ||||||| | ||||  ||||| | |||||||| |||||||||    
T  28504688 gagtaaatcatcaaattcgtctctgtctttgtaagtcattctcaaattagtctatgactctattaatatttcaaactagtctctgtttttgtcaaa 28504783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 175
Target Start/End: Original strand, 2464053 - 2464131
Alignment:
Q  97 cgagtaaatcatcaaattgatccatgtctttgtacgaaattctcaaattggtctctgactctttgaataactcaaaatg 175  Q
    |||||||| |||||||||| ||||| ||||||||| ||||| | || |||||| | |||||  | ||||||||||||||    
T  2464053 cgagtaaaccatcaaattggtccatatctttgtactaaatttttaatttggtcccagactccattaataactcaaaatg 2464131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 158
Target Start/End: Complemental strand, 38208563 - 38208526
Alignment:
Q  121 tgtctttgtacgaaattctcaaattggtctctgactct 158  Q
    ||||||||||| ||||||||||||||||| ||||||||    
T  38208563 tgtctttgtaccaaattctcaaattggtccctgactct 38208526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 112; Significance: 1e-56; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 98 - 328
Target Start/End: Original strand, 35315842 - 35316073
Alignment:
Q  98 gagtaaatcatcaaattgatccatgtctttgtacgaaattctcaaattggtctctgactctttgaataactcaaaatggtctctgtctttgtcaaatatt 197  Q
    ||||||| || |||||| |||  || |||||||| ||||| |||| | |||| |||||||| | ||||||||||||| |||| |||||||||||||| ||    
T  35315842 gagtaaaccaccaaattaatctctgcctttgtaccaaattgtcaattcggtccctgactctattaataactcaaaatagtctatgtctttgtcaaatgtt 35315941  T
Q  198 tgtcagattggtccttgactctattagt-gttttgtattttgagtgttaatgactcaatgtcttttggatattatttagtggctaatgacataatatttt 296  Q
    | |||||||| ||| ||||||||||||| |||||||||||||||||||| |||| |||||||||||||||||| |||||||| ||||||||||||   ||    
T  35315942 tctcagattgctccctgactctattagttgttttgtattttgagtgttattgacccaatgtcttttggatattttttagtggttaatgacataatgcctt 35316041  T
Q  297 ttggatcttatttggtacgctaatgacttaaa 328  Q
    |||||||||||||| |||| ||||||||||||    
T  35316042 ttggatcttatttgatacgttaatgacttaaa 35316073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 98 - 328
Target Start/End: Complemental strand, 47426 - 47195
Alignment:
Q  98 gagtaaatcatcaaattgatccatgtctttgtacgaaattctcaaattggtctctgactctttgaataactcaaaatggtctctgtctttgtcaaatatt 197  Q
    |||||||| || |||||| ||  | ||||||||| ||||| | |||||||||| || |||| | |||||||||||||| |||||||||||||| || |||    
T  47426 gagtaaattattaaattggtctctatctttgtaccaaattattaaattggtctttgtctctattaataactcaaaatgatctctgtctttgtcgaacatt 47327  T
Q  198 tgtcagattggtccttgactctattagt-gttttgtattttgagtgttaatgactcaatgtcttttggatattatttagtggctaatgacataatatttt 296  Q
    | |||||||||||| ||| ||||||||| ||||||||||||||||||||| | |||||| ||||||| |||||||||||||| |||||| ||||| | ||    
T  47326 tttcagattggtccctgattctattagttgttttgtattttgagtgttaacggctcaatatcttttgaatattatttagtggttaatgatataatgtatt 47227  T
Q  297 ttggatcttatttggtacgctaatgacttaaa 328  Q
    ||| |||||||||| |||| ||||||||||||    
T  47226 ttgaatcttatttgatacgttaatgacttaaa 47195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 120 - 328
Target Start/End: Complemental strand, 33190228 - 33190020
Alignment:
Q  120 atgtctttgtacgaaattctcaaattggtctctgactctttgaataactcaaaatggtctctgtctttgtcaaatatttgtcagattggtccttgactct 219  Q
    |||||||| ||  ||||| |||| ||| || |||||||| | ||||| |||||||||||||||||||||| |||| ||| |||||||||||  |||||||    
T  33190228 atgtctttatatcaaattttcaatttgatccctgactctattaataattcaaaatggtctctgtctttgttaaatgtttctcagattggtctctgactct 33190129  T
Q  220 attagt-gttttgtattttgagtgttaatgactcaatgtcttttggatattatttagtggctaatgacataatattttttggatcttatttggtacgcta 318  Q
    |||||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||| |||||||  |||| |||||||||||||||| ||    
T  33190128 attagttgttttgtattttaagtgttaatgtctcaatgtcttttggatattatttagtggttaatggcataatacatttt-gatcttatttggtacgtta 33190030  T
Q  319 atgacttaaa 328  Q
    | | ||||||    
T  33190029 aaggcttaaa 33190020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 98 - 328
Target Start/End: Complemental strand, 26073512 - 26073281
Alignment:
Q  98 gagtaaatcatcaaattgatccatgtctttgtacgaaattctcaaattggtctctgactctttgaataactcaaaatggtctctgtctttgtcaaatatt 197  Q
    ||||||| |||||||||| ||  ||||||||||| ||||| |||| |||||| |||||||| | ||||| ||||||||||||||||||||||||||| ||    
T  26073512 gagtaaaccatcaaattggtcactgtctttgtaccaaattttcaatttggtccctgactctattaataattcaaaatggtctctgtctttgtcaaatgtt 26073413  T
Q  198 tgtcagattggtccttgactctatt-agtgttttgtattttgagtgttaatgactcaatgtcttttggatattatttagtggctaatgacataatatttt 296  Q
    | | |||||||||  || || |||| | |||||||||||||||||||||  || |||| || |||||||||||||||| ||| | |||  |||||   ||    
T  26073412 tcttagattggtctctgcctttattaattgttttgtattttgagtgttatcgattcaacgtgttttggatattatttactggtttatggaataatgcctt 26073313  T
Q  297 ttggatcttatttggtacgctaatgacttaaa 328  Q
    ||||||||||||||||||| ||||| ||||||    
T  26073312 ttggatcttatttggtacgttaatggcttaaa 26073281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 98 - 328
Target Start/End: Complemental strand, 26097299 - 26097068
Alignment:
Q  98 gagtaaatcatcaaattgatccatgtctttgtacgaaattctcaaattggtctctgactctttgaataactcaaaatggtctctgtctttgtcaaatatt 197  Q
    ||||||| |||||||||| ||  ||||||||||| ||||| |||| |||||| |||||||| | ||||| ||||||||||||||||||||||||||| ||    
T  26097299 gagtaaaccatcaaattggtcactgtctttgtaccaaattttcaatttggtccctgactctattaataattcaaaatggtctctgtctttgtcaaatgtt 26097200  T
Q  198 tgtcagattggtccttgactctatt-agtgttttgtattttgagtgttaatgactcaatgtcttttggatattatttagtggctaatgacataatatttt 296  Q
    | | |||||||||  || || |||| | |||||||||||||||||||||  || |||| || |||||||||||||||| ||| | |||  |||||   ||    
T  26097199 tcttagattggtctctgcctttattaattgttttgtattttgagtgttatcgattcaacgtgttttggatattatttactggtttatggaataatgcctt 26097100  T
Q  297 ttggatcttatttggtacgctaatgacttaaa 328  Q
    ||||||||||||||||||| ||||| ||||||    
T  26097099 ttggatcttatttggtacgttaatggcttaaa 26097068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 141 - 321
Target Start/End: Original strand, 527461 - 527641
Alignment:
Q  141 aaattggtctctgactctttgaataactcaaaatggtctctgtctttgtcaaatatttgtcagattggtccttgactctattagt-gttttgtattttga 239  Q
    ||||||||||||| || | | ||||| |||| || ||||||||||||||||||| ||| |||||||||||  ||| | | ||||| ||||||||||||||    
T  527461 aaattggtctctgtctatattaataattcaagattgtctctgtctttgtcaaatgtttctcagattggtcagtgattttgttagttgttttgtattttga 527560  T
Q  240 gtgttaatgactcaatgtcttttggatattatttagtggctaatgacataatattttttggatcttatttggtacgctaatg 321  Q
    |||||||||||||||||| |||| ||||||||||||||| |||||||||||  | ||||| ||||||| | |||||||||||    
T  527561 gtgttaatgactcaatgttttttagatattatttagtggttaatgacataacgtcttttgaatcttatct-gtacgctaatg 527641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 98 - 237
Target Start/End: Original strand, 32047233 - 32047373
Alignment:
Q  98 gagtaaatcatcaaattgatccatgtctttgtacgaaattctcaaattggtctctgactctttgaataactcaaaatggtctctgtctttgtcaaatatt 197  Q
    |||||||||| ||||||| ||| | ||||||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||  ||    
T  32047233 gagtaaatcaccaaattggtccctatctttgtaccaaattctcaaattggtctctgactctattaataactcaaaatggtctctgtctttgtcaaacttt 32047332  T
Q  198 tgtcagattggtccttgactctattag-tgttttgtatttt 237  Q
    | ||| |||  |||   |||||||||| |||||||||||||    
T  32047333 tctcatattattccccaactctattagttgttttgtatttt 32047373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 98 - 337
Target Start/End: Original strand, 7511079 - 7511306
Alignment:
Q  98 gagtaaatcatcaaattgatccatgtctttgtacgaaattctcaaattggtctctgactctttgaataactcaaaatggtctctgtctttgtcaaatatt 197  Q
    ||||||| |||||||||| ||| | ||||||||| |||||||||||||||||  ||||||| | |||||||||||||||||            |||  ||    
T  7511079 gagtaaaccatcaaattggtccctatctttgtaccaaattctcaaattggtcaatgactctgttaataactcaaaatggtc------------aaacgtt 7511166  T
Q  198 tgtcagattggtccttgactctattagt-gttttgtattttgagtgttaatgactcaatgtcttttggatattatttagtggctaatgacataatatttt 296  Q
    | |||||||||||| | ||||||||| | |||||||||||| |||||||||   ||||||||||| | |||||||||||| | ||||||||||||  |||    
T  7511167 tctcagattggtccctaactctattaattgttttgtattttaagtgttaatagttcaatgtcttt-gaatattatttagtagttaatgacataatgcttt 7511265  T
Q  297 ttggatcttatttggtacgctaatgacttaaagtacaaaat 337  Q
    ||  |||||||||  |||| |||||||||||| ||||||||    
T  7511266 ttaaatcttattttatacgttaatgacttaaaatacaaaat 7511306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 98 - 237
Target Start/End: Original strand, 33189882 - 33190022
Alignment:
Q  98 gagtaaatcatcaaattgatccatgtctttgtacgaaattctcaaattggtctctgactctttgaataactcaaaatggtctctgtctttgtcaaatatt 197  Q
    ||||||| ||||||| || ||  ||||||||||| || ||||||||||||||| ||||||| | |||||||||||||||| | ||||||| |||||  ||    
T  33189882 gagtaaaccatcaaactggtctctgtctttgtaccaacttctcaaattggtctttgactctattaataactcaaaatggtatttgtctttatcaaaagtt 33189981  T
Q  198 tgtcagattggtccttgactctattag-tgttttgtatttt 237  Q
    | |||||||||||| |||||||||||| ||||||| |||||    
T  33189982 tctcagattggtccctgactctattagttgttttgcatttt 33190022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 121 - 237
Target Start/End: Complemental strand, 35316188 - 35316071
Alignment:
Q  121 tgtctttgtacgaaattctcaaattggtctctgactctttgaataactcaaaatggtctctgtctttgtcaaatatttgtcagattggtccttgactcta 220  Q
    ||||||||||| ||||||| ||||||||| |||||||| | ||||||||||||||||| |||||||| |||||  ||| |||||||||||| | ||||||    
T  35316188 tgtctttgtaccaaattcttaaattggtccctgactctattaataactcaaaatggtccctgtctttctcaaacgtttctcagattggtccctaactcta 35316089  T
Q  221 ttag-tgttttgtatttt 237  Q
    |||| ||||||| |||||    
T  35316088 ttagttgttttgcatttt 35316071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 98 - 237
Target Start/End: Original strand, 26073143 - 26073283
Alignment:
Q  98 gagtaaatcatcaaattgatccatgtctttgtacgaaattctcaaattggtctctgactctttgaataactcaaaatggtctctgtctttgtcaaatatt 197  Q
    ||||||| || ||||||| | ||||||||||||| ||||| ||||||||  |||| ||||| | ||||||||||||||||| || |||||||||||  ||    
T  26073143 gagtaaaccaccaaattggttcatgtctttgtaccaaattttcaaattgacctctaactctattaataactcaaaatggtcactttctttgtcaaacgtt 26073242  T
Q  198 tgtcagattggtccttgactctattag-tgttttgtatttt 237  Q
    | |||||||||||| || ||||||||| ||||||| |||||    
T  26073243 tctcagattggtccctgcctctattagttgttttgcatttt 26073283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 123 - 237
Target Start/End: Original strand, 25658412 - 25658527
Alignment:
Q  123 tctttgtacgaaattctcaaattggtctctgactctttgaataactcaaaatggtctctgtctttgtcaaatatttgtcagattggtccttgactctatt 222  Q
    ||||||||| ||||||||||||||||| |||||||| | |||||||||||||||||  ||| |||||||||  ||| |||||||| |||| |||| ||||    
T  25658412 tctttgtaccaaattctcaaattggtccctgactctgttaataactcaaaatggtcattgtttttgtcaaacgtttatcagattgctcctcgactttatt 25658511  T
Q  223 ag-tgttttgtatttt 237  Q
    || |||||||||||||    
T  25658512 agttgttttgtatttt 25658527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 107 - 193
Target Start/End: Complemental strand, 5964328 - 5964242
Alignment:
Q  107 atcaaattgatccatgtctttgtacgaaattctcaaattggtctctgactctttgaataactcaaaatggtctctgtctttgtcaaa 193  Q
    ||||||||||||||| ||||| ||| |||||||||| |||||||| |||||||| ||||||||||||||||| |||||||| |||||    
T  5964328 atcaaattgatccatatctttataccaaattctcaatttggtctccgactcttttaataactcaaaatggtcactgtctttatcaaa 5964242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 98 - 237
Target Start/End: Original strand, 26096930 - 26097070
Alignment:
Q  98 gagtaaatcatcaaattgatccatgtctttgtacgaaattctcaaattggtctctgactctttgaataactcaaaatggtctctgtctttgtcaaatatt 197  Q
    ||||||| || ||||||| | ||||||||||||| ||||| ||||||||  |||| ||||| | ||||||||||||||||| || |||||||||||  ||    
T  26096930 gagtaaaccaccaaattggttcatgtctttgtaccaaattttcaaattgacctctaactctattaataactcaaaatggtcactttctttgtcaaacgtt 26097029  T
Q  198 tgtcagattggtccttgactctattag-tgttttgtatttt 237  Q
    | ||| |||||||| || ||||||||| ||||||| |||||    
T  26097030 tctcaaattggtccctgcctctattagttgttttgcatttt 26097070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 225 - 336
Target Start/End: Complemental strand, 25658627 - 25658517
Alignment:
Q  225 tgttttgtattttgagtgttaatgactcaatgtcttttggatattatttagtggctaatgacataatattttttggatcttatttggtacgctaatgact 324  Q
    |||||| |||||||||||||||||| |||| |||||||| |||||||||||||| ||||  |||||| | ||||||||||||||||||||  || || ||    
T  25658627 tgttttatattttgagtgttaatgattcaacgtcttttg-atattatttagtggataattgcataatgtgttttggatcttatttggtactttagtggct 25658529  T
Q  325 taaagtacaaaa 336  Q
    |||| |||||||    
T  25658528 taaaatacaaaa 25658517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 98 - 193
Target Start/End: Original strand, 36642607 - 36642702
Alignment:
Q  98 gagtaaatcatcaaattgatccatgtctttgtacgaaattctcaaattggtctctgactctttgaataactcaaaatggtctctgtctttgtcaaa 193  Q
    ||||||||||| |||||| ||  | ||||||||| ||||| ||||||||||| |||||||| | |||||||||| ||  |||||||||||||||||    
T  36642607 gagtaaatcattaaattggtctctatctttgtaccaaattttcaaattggtccctgactctattaataactcaacatcatctctgtctttgtcaaa 36642702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 98 - 184
Target Start/End: Original strand, 21297713 - 21297799
Alignment:
Q  98 gagtaaatcatcaaattgatccatgtctttgtacgaaattctcaaattggtctctgactctttgaataactcaaaatggtctctgtc 184  Q
    ||||||| |||||||||| ||| ||||||||||| ||||||| || || |||||||||||| | ||||||||||||| |||| ||||    
T  21297713 gagtaaaccatcaaattggtccctgtctttgtaccaaattcttaatttagtctctgactctattaataactcaaaatagtctttgtc 21297799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 120 - 203
Target Start/End: Original strand, 32056648 - 32056730
Alignment:
Q  120 atgtctttgtacgaaattctcaaattggtctctgactctttgaataactcaaaatggtctctgtctttgtcaaatatttgtcag 203  Q
    |||||||||||| ||||| |||| |||||| || ||||| | ||||||| |||||||||| ||||||||||||| |||| ||||    
T  32056648 atgtctttgtaccaaattttcaatttggtccct-actctattaataacttaaaatggtctttgtctttgtcaaacatttctcag 32056730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 121 - 194
Target Start/End: Original strand, 5964012 - 5964086
Alignment:
Q  121 tgtctttgtacgaaattctcaaattggtctctgactctttgaataactcaaa-atggtctctgtctttgtcaaat 194  Q
    ||||||||||| |||||||||| || |||||||||||| | ||||||||||| |||||| |||||| ||| ||||    
T  5964012 tgtctttgtaccaaattctcaatttagtctctgactctattaataactcaaacatggtccctgtctctgttaaat 5964086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 244 - 313
Target Start/End: Complemental strand, 36642829 - 36642760
Alignment:
Q  244 taatgactcaatgtcttttggatattatttagtggctaatgacataatattttttggatcttatttggta 313  Q
    |||||| || |||||||||| |||||||||||||| |||||| ||||| | |||| ||| ||||||||||    
T  36642829 taatgattcgatgtcttttgaatattatttagtggttaatgatataatgtattttagattttatttggta 36642760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 193
Target Start/End: Complemental strand, 32056932 - 32056866
Alignment:
Q  127 tgtacgaaattctcaaattggtctctgactctttgaataactcaaaatggtctctgtctttgtcaaa 193  Q
    ||||| |||||||||| |||||| | |||| | | ||||||| |||||||| |||||||||||||||    
T  32056932 tgtaccaaattctcaatttggtcccggactttattaataacttaaaatggtttctgtctttgtcaaa 32056866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 198
Target Start/End: Complemental strand, 6080105 - 6080048
Alignment:
Q  141 aaattggtctctgactctttgaataactcaaaatggtctctgtctttgtcaaatattt 198  Q
    |||||||||||||||||| | |||||||||||||  ||  ||||||||| ||||||||    
T  6080105 aaattggtctctgactctgttaataactcaaaataatcaatgtctttgttaaatattt 6080048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 111; Significance: 6e-56; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 95 - 328
Target Start/End: Original strand, 16434801 - 16435034
Alignment:
Q  95 aacgagtaaatcatcaaattgatccatgtctttgtacgaaattctcaaattggtctctgactctttgaataactcaaaatggtctctgtctttgtcaaat 194  Q
    |||||||||| |||||||||  ||  | ||||||||| |||||||||||||||||  ||||||| | ||||||| |||||||| |||||||||||||||     
T  16434801 aacgagtaaaccatcaaattagtctctctctttgtaccaaattctcaaattggtca-tgactctattaataactaaaaatggtatctgtctttgtcaaaa 16434899  T
Q  195 atttgtcagattggtccttgactctattag-tgttttgtattttgagtgttaatgactcaatgtcttttggatattatttagtggctaatgacataatat 293  Q
    |||| |||||||||||||||||| |||||| |||||||||||||||||||||||  |||||||| |||||||||||||||||||| ||||   |||||      
T  16434900 atttctcagattggtccttgactttattagttgttttgtattttgagtgttaatagctcaatgtattttggatattatttagtggttaatagtataatgc 16434999  T
Q  294 tttttggatcttatttggtacgctaatgacttaaa 328  Q
     |||| |||||||||||||||| ||||||||||||    
T  16435000 attttagatcttatttggtacgttaatgacttaaa 16435034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 101 - 336
Target Start/End: Complemental strand, 67705 - 67469
Alignment:
Q  101 taaatcatcaaattgatccatgtctttgtacgaaattctcaaattggtctctgactctttgaataactcaaaatggtctctgtctttgtcaaatatttgt 200  Q
    ||||||||||||||| |||  |||||||||| ||||| |||||||||||||||| | | | ||||||||||||| ||||| |||||||||| |  ||| |    
T  67705 taaatcatcaaattggtcccagtctttgtaccaaattttcaaattggtctctgattttattaataactcaaaatagtctccgtctttgtcatacgttttt 67606  T
Q  201 cagattggtccttgactctattag-tgttttgtattttgagtgttaatgactcaatgtcttttggatattatttagtggctaatgacataatattttttg 299  Q
    ||||||||||| |||||||||||| ||||||||||||| |||||||||   |||||| ||||||||||||||||||||| | ||| | ||||   |||||    
T  67605 cagattggtccctgactctattagttgttttgtattttcagtgttaattgatcaatgccttttggatattatttagtggttgatggcctaatgccttttg 67506  T
Q  300 gatcttatttggtacgctaatgacttaaagtacaaaa 336  Q
     ||||||||||||||  |||||| ||||| |||||||    
T  67505 aatcttatttggtacattaatgagttaaaatacaaaa 67469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 122 - 336
Target Start/End: Complemental strand, 10388565 - 10388348
Alignment:
Q  122 gtctttgtacgaaattctcaaattggtctctgactctttgaataactcaaaatggtctctgtctttgtcaaatatttgtcagattggtccttgactctat 221  Q
    |||||||||| | |||||||||||||| ||| ||||| | ||||| |||||||| ||  ||||||||||| || ||| | | || | |||  ||||||||    
T  10388565 gtctttgtaccatattctcaaattggtttctaactctattaataaatcaaaatgatccatgtctttgtcagatgtttcttatatcgatcccggactctat 10388466  T
Q  222 --tagt-gttttgtattttgagtgttaatgactcaatgtcttttggatattatttagtggctaatgacataatattttttggatcttatttggtacgcta 318  Q
      |||| |||||||||||||||| ||||||||||||||||||||||||||||||| |||| ||||| |||||| | ||||||||||||||| ||||  ||    
T  10388465 attagttgttttgtattttgagtattaatgactcaatgtcttttggatattattttgtggttaatggcataatgtcttttggatcttatttagtacctta 10388366  T
Q  319 atgacttaaagtacaaaa 336  Q
    |||||||||| |||||||    
T  10388365 atgacttaaaatacaaaa 10388348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 216 - 336
Target Start/End: Complemental strand, 30847875 - 30847754
Alignment:
Q  216 ctctattagt-gttttgtattttgagtgttaatgactcaatgtcttttggatattatttagtggctaatgacataatattttttggatcttatttggtac 314  Q
    |||||||||| | |||||||||| ||||||||||| ||||||| ||||||||  |||||||||| |||||||||||||||||||| || |||||||||||    
T  30847875 ctctattagttgctttgtattttaagtgttaatgattcaatgttttttggattctatttagtggttaatgacataatattttttgtattttatttggtac 30847776  T
Q  315 gctaatgacttaaagtacaaaa 336  Q
    | |||||||||||| |||||||    
T  30847775 gttaatgacttaaaatacaaaa 30847754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 97 - 237
Target Start/End: Original strand, 10388217 - 10388358
Alignment:
Q  97 cgagtaaatcatcaaattgatccatgtctttgtacgaaattctcaaattggtctctgactctttgaataactcaaaatggtctctgtctttgtcaaatat 196  Q
    ||||||||| || |||||||||  ||||||| ||| ||||| | ||| |||||||||||||| | |||||||||||||||||||||||||||| |||| |    
T  10388217 cgagtaaattattaaattgatctttgtctttataccaaatttttaaactggtctctgactctattaataactcaaaatggtctctgtctttgttaaatgt 10388316  T
Q  197 ttgtcagattggtccttgactctatta-gtgttttgtatttt 237  Q
    || ||| |||||||  ||||||||||| ||||||||||||||    
T  10388317 ttctcatattggtctctgactctattaggtgttttgtatttt 10388358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 98 - 237
Target Start/End: Original strand, 67339 - 67479
Alignment:
Q  98 gagtaaatcatcaaattgatccatgtctttgtacgaaattctcaaattggtctctgactctttgaataactcaaaatggtctctgtctttgtcaaatatt 197  Q
    |||||||||| ||||||| ||||||||||||||| ||||||||||||||||| |||||| | | ||||||| ||||||||| |||| ||| ||||| |||    
T  67339 gagtaaatcaccaaattggtccatgtctttgtaccaaattctcaaattggtccctgactatattaataacttaaaatggtccctgtttttatcaaacatt 67438  T
Q  198 tgtcagattggtccttgactctatt-agtgttttgtatttt 237  Q
    | |||||||||||| | ||||| || | |||||||||||||    
T  67439 tctcagattggtccctcactctgttaattgttttgtatttt 67479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 98 - 203
Target Start/End: Complemental strand, 6714625 - 6714521
Alignment:
Q  98 gagtaaatcatcaaattgatccatgtctttgtacgaaattctcaaattggtctctgactctttgaataactcaaaatggtctctgtctttgtcaaatatt 197  Q
    ||||||| |||||||| ||||  ||||||||||| |||||||||||||||||||||||| | | ||||| |||||||||||| |||||||||||| ||||    
T  6714625 gagtaaaccatcaaat-gatcattgtctttgtaccaaattctcaaattggtctctgactttattaataattcaaaatggtctttgtctttgtcaattatt 6714527  T
Q  198 tgtcag 203  Q
    | ||||    
T  6714526 tctcag 6714521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 94 - 237
Target Start/End: Original strand, 30847620 - 30847764
Alignment:
Q  94 aaacgagtaaatcatcaaattgatccatgtctttgtacgaaattctcaaattggtctctgactctttgaataactcaaaatggtctctgtctttgtcaaa 193  Q
    ||||||||||| ||| |||||| || |||||||| ||| |||||||  ||||||||| ||| ||| | ||||| | ||||||||| || |||||||||||    
T  30847620 aaacgagtaaaccattaaattggtctatgtctttataccaaattcttgaattggtctatgattctattaataatttaaaatggtccctatctttgtcaaa 30847719  T
Q  194 tatttgtcagattggtccttgactctattag-tgttttgtatttt 237  Q
      ||| |||||||||||  | |||||||||| |||||||||||||    
T  30847720 cgtttctcagattggtctctaactctattagttgttttgtatttt 30847764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 121 - 194
Target Start/End: Complemental strand, 30122889 - 30122816
Alignment:
Q  121 tgtctttgtacgaaattctcaaattggtctctgactctttgaataactcaaaatggtctctgtctttgtcaaat 194  Q
    ||||||||||  ||||||||||||||||| || ||| | | |||||||||||||||||||||||||||||||||    
T  30122889 tgtctttgtatcaaattctcaaattggtccctaactttattaataactcaaaatggtctctgtctttgtcaaat 30122816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 101 - 233
Target Start/End: Original strand, 3687627 - 3687763
Alignment:
Q  101 taaatcatcaaattgatccatgtctttgtacgaaattctcaaattggtctctgactctttgaataactcaaaa---tggtctctgtctttgtcaaatatt 197  Q
    |||||||| |||||| ||  ||||||||||  |||||||||||||| ||  ||||||| | ||||||||||||   || | | |||||||||||||  ||    
T  3687627 taaatcattaaattggtctctgtctttgtatcaaattctcaaattgatccatgactctgttaataactcaaaaaaatgttatttgtctttgtcaaacgtt 3687726  T
Q  198 tgtcagattggtccttgactctattag-tgttttgta 233  Q
    | ||||||||||||   |||||||||| |||||||||    
T  3687727 tctcagattggtccccaactctattagttgttttgta 3687763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 251 - 305
Target Start/End: Original strand, 30122481 - 30122535
Alignment:
Q  251 tcaatgtcttttggatattatttagtggctaatgacataatattttttggatctt 305  Q
    ||||||||||||| |||||||||||||| ||||||||||||   |||||||||||    
T  30122481 tcaatgtcttttgtatattatttagtggttaatgacataatgccttttggatctt 30122535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 164 - 238
Target Start/End: Complemental strand, 3687895 - 3687820
Alignment:
Q  164 taactcaaaatggtctctgtctttgtcaaatatttgtcagattggtccttgactctattag-tgttttgtattttg 238  Q
    |||||||||||||||||||| |||||||||  ||| ||||||||| ||  |||| | |||| ||||||||||||||    
T  3687895 taactcaaaatggtctctgtttttgtcaaacgtttctcagattggcccccgactttgttagttgttttgtattttg 3687820  T

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Target: scaffold0024 (Bit Score: 96; Significance: 5e-47; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 110 - 264
Target Start/End: Complemental strand, 70919 - 70764
Alignment:
Q  110 aaattgatccatgtctttgtacgaaattctcaaattggtctctgactctttgaataactcaaaatggtctctgtctttgtcaaatatttgtcagattggt 209  Q
    |||||| ||| ||||||||||| |||||||||||||||||||||||||| | |||| ||||||||||||  |||||||||||||  ||| ||||||||||    
T  70919 aaattggtccctgtctttgtactaaattctcaaattggtctctgactctattaatagctcaaaatggtccatgtctttgtcaaacgtttctcagattggt 70820  T
Q  210 ccttgactctattag-tgttttgtattttgagtgttaatgactcaatgtcttttgg 264  Q
    |  |||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  70819 ctctgactctattagttgttttgtattttgagtgttaatgactcaatgtcttttgg 70764  T

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Target: scaffold0024; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 208
Target Start/End: Original strand, 70614 - 70698
Alignment:
Q  124 ctttgtacgaaattctcaaattggtctctgactctttgaataactcaaaatggtctctgtctttgtcaaatatttgtcagattgg 208  Q
    ||||||||  |||||||||||||||| || ||| | | ||||||| |||||| | |||||||||||||||  ||| |||||||||    
T  70614 ctttgtactcaattctcaaattggtccctcactttattaataacttaaaatgatttctgtctttgtcaaacgtttctcagattgg 70698  T

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Target: scaffold0081 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0081
Description:

Target: scaffold0081; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 246 - 312
Target Start/End: Complemental strand, 8669 - 8603
Alignment:
Q  246 atgactcaatgtcttttggatattatttagtggctaatgacataatattttttggatcttatttggt 312  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||    
T  8669 atgactcaatgtcttttggatattatttagtggttaatgacataatatcttttggatattatttggt 8603  T

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Target: scaffold0022 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 96 - 193
Target Start/End: Complemental strand, 122645 - 122548
Alignment:
Q  96 acgagtaaatcatcaaattgatccatgtctttgtacgaaattctcaaattggtctctgactctttgaataactcaaaatggtctctgtctttgtcaaa 193  Q
    ||||||||| || ||| ||| ||| |||||||||| |||||||||||||| |||||||||||| | ||||  ||||| | |||| |||||||||||||    
T  122645 acgagtaaagcaccaagttggtccctgtctttgtaagaaattctcaaattagtctctgactctattaatatttcaaactagtctttgtctttgtcaaa 122548  T

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