View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4194_low_5 (Length: 278)
Name: NF4194_low_5
Description: NF4194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4194_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 33760304 - 33760044
Alignment:
| Q |
1 |
tttttactcatattcaactccttttgattaaacatatgttttaaaacttgtatcatcgctaaagaccttaaaattgcacctaaaaaa-gaccttaaaatt |
99 |
Q |
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| T |
33760304 |
tttttactcatattcaactccttttagttaaacatatgtttttaaacttgtatcatcgctaaagaccttaaaattgcccctaaaaaaagaccttaaaatt |
33760205 |
T |
|
| Q |
100 |
gaaccgtaaagaaaatgcctccatattttgagcacaagcttcacattagccaactctaatagatcatggatagagtagnnnnnnncaagagtattacatt |
199 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
33760204 |
gaactgtaaagaaaatgcctccatattttgagcacaagcttcacattagccaactctaatagatcatggatagagtagtttttttcaagagtattacatt |
33760105 |
T |
|
| Q |
200 |
gtgtaaaacaggtgttagcatcctcctaagatccaaaaagctctcttcataccggccttcc |
260 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33760104 |
gtgtaaaacaggtgttagcatcctcctaagatccaaaaagctctcttcataccggccttcc |
33760044 |
T |
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