View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4194_low_9 (Length: 239)

Name: NF4194_low_9
Description: NF4194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4194_low_9
NF4194_low_9
[»] chr3 (4 HSPs)
chr3 (1-222)||(25494517-25494739)
chr3 (65-105)||(55121195-55121235)
chr3 (75-121)||(30121956-30122002)
chr3 (3-61)||(42514874-42514931)
[»] chr1 (2 HSPs)
chr1 (3-59)||(50403094-50403149)
chr1 (57-121)||(882931-882995)
[»] chr7 (7 HSPs)
chr7 (3-57)||(45444723-45444776)
chr7 (63-119)||(7307705-7307761)
chr7 (3-62)||(35985265-35985322)
chr7 (3-62)||(36006673-36006730)
chr7 (11-62)||(41247888-41247938)
chr7 (7-59)||(35985340-35985391)
chr7 (7-59)||(36006748-36006799)
[»] chr5 (3 HSPs)
chr5 (76-121)||(39063073-39063118)
chr5 (30-62)||(14958921-14958953)
chr5 (85-121)||(40772974-40773010)
[»] chr2 (4 HSPs)
chr2 (65-122)||(31719185-31719242)
chr2 (67-105)||(9733547-9733585)
chr2 (65-103)||(25931651-25931689)
chr2 (67-121)||(27279492-27279546)
[»] chr8 (2 HSPs)
chr8 (28-59)||(9550194-9550225)
chr8 (65-104)||(30557007-30557046)
[»] scaffold0003 (1 HSPs)
scaffold0003 (67-105)||(320692-320730)
[»] chr6 (1 HSPs)
chr6 (65-121)||(674129-674185)


Alignment Details
Target: chr3 (Bit Score: 171; Significance: 6e-92; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 25494739 - 25494517
Alignment:
Q  1 ctgatcacatttataagaaaaataaacgactttttaaatttattgaataactaatgtatatgttaaatacattggttattcaacgaacctaaaaaattgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||||||| |    
T  25494739 ctgatcacatttataagaaaaataaacgactttttaaatttattgaataactaatatatatgttaaatacattgattattcaatgaacctaaaaaattat 25494640  T
Q  101 tttttacctacaaatgtgacca-agagagtatgtgataagttctccaataacatttgtacttgttttatcaataagaatgcatgaataactcttacccaa 199  Q
    ||||||| ||||||| | |  | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  25494639 tttttacttacaaatataatgagagagagtatgtgataagttctccaataacatttgtacttgttttatcaataagaatgcatggataactcttacccaa 25494540  T
Q  200 gcaagattactgttgccgtttat 222  Q
    ||||||||||| |||||||||||    
T  25494539 gcaagattactcttgccgtttat 25494517  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 105
Target Start/End: Complemental strand, 55121235 - 55121195
Alignment:
Q  65 aaatacattggttattcaacgaacctaaaaaattgtttttt 105  Q
    ||||||||| ||||||||| |||||||||||||||||||||    
T  55121235 aaatacattagttattcaatgaacctaaaaaattgtttttt 55121195  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 121
Target Start/End: Complemental strand, 30122002 - 30121956
Alignment:
Q  75 gttattcaacgaacctaaaaaattgttttttacctacaaatgtgacc 121  Q
    ||||||||| ||||||||||||||| ||||||| || ||||||||||    
T  30122002 gttattcaatgaacctaaaaaattgatttttacttataaatgtgacc 30121956  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 61
Target Start/End: Complemental strand, 42514931 - 42514874
Alignment:
Q  3 gatcacatttataagaaaaataaacgactttttaaatttattgaataactaatgtatat 61  Q
    ||||||||||||||  |||| |||| |||||||| ||||||| ||||||||||||||||    
T  42514931 gatcacatttataaacaaaa-aaacaactttttagatttattaaataactaatgtatat 42514874  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 50403094 - 50403149
Alignment:
Q  3 gatcacatttataagaaaaataaacgactttttaaatttattgaataactaatgtat 59  Q
    ||||||||||||||| |||| | || |||||||||||||||||||||||||||||||    
T  50403094 gatcacatttataagcaaaa-acacaactttttaaatttattgaataactaatgtat 50403149  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 121
Target Start/End: Complemental strand, 882995 - 882931
Alignment:
Q  57 tatatgttaaatacattggttattcaacgaacctaaaaaattgttttttacctacaaatgtgacc 121  Q
    ||||| ||||||||||| ||||||||| ||||||||||| || | |||||| || ||||||||||    
T  882995 tatatattaaatacattagttattcaatgaacctaaaaagttatattttacttataaatgtgacc 882931  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 45444723 - 45444776
Alignment:
Q  3 gatcacatttataagaaaaataaacgactttttaaatttattgaataactaatgt 57  Q
    ||||||||||||||| |||| |||| ||||||||| |||||||||||||||||||    
T  45444723 gatcacatttataagcaaaa-aaacaactttttaagtttattgaataactaatgt 45444776  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 119
Target Start/End: Complemental strand, 7307761 - 7307705
Alignment:
Q  63 ttaaatacattggttattcaacgaacctaaaaaattgttttttacctacaaatgtga 119  Q
    ||||||||||| ||||||||| |||||||||||||||| |||| | || ||||||||    
T  7307761 ttaaatacattcgttattcaatgaacctaaaaaattgtgttttgcttataaatgtga 7307705  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 62
Target Start/End: Original strand, 35985265 - 35985322
Alignment:
Q  3 gatcacatttataagaaaaataaacgactttttaaatttattgaataactaatgtatatg 62  Q
    ||||||||||||||| |||||| |  |||||||| ||| |||||||||||||||||||||    
T  35985265 gatcacatttataagcaaaataca--actttttagattaattgaataactaatgtatatg 35985322  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 62
Target Start/End: Original strand, 36006673 - 36006730
Alignment:
Q  3 gatcacatttataagaaaaataaacgactttttaaatttattgaataactaatgtatatg 62  Q
    ||||||||||||||| |||||| |  |||||||| ||| |||||||||||||||||||||    
T  36006673 gatcacatttataagcaaaataca--actttttagattaattgaataactaatgtatatg 36006730  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 62
Target Start/End: Original strand, 41247888 - 41247938
Alignment:
Q  11 ttataagaaaaataaacgactttttaaatttattgaataactaatgtatatg 62  Q
    ||||||||||||||| | |||||||| ||||||||||||| |||||||||||    
T  41247888 ttataagaaaaataatc-actttttagatttattgaataattaatgtatatg 41247938  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 59
Target Start/End: Complemental strand, 35985391 - 35985340
Alignment:
Q  7 acatttataagaaaaataaacgactttttaaatttattgaataactaatgtat 59  Q
    |||||||||||||||  |||| |||||||| ||| ||||||||||||||||||    
T  35985391 acatttataagaaaag-aaacaactttttagattaattgaataactaatgtat 35985340  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 59
Target Start/End: Complemental strand, 36006799 - 36006748
Alignment:
Q  7 acatttataagaaaaataaacgactttttaaatttattgaataactaatgtat 59  Q
    |||||||||||||||  |||| |||||||| ||| ||||||||||||||||||    
T  36006799 acatttataagaaaag-aaacaactttttagattaattgaataactaatgtat 36006748  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 76 - 121
Target Start/End: Complemental strand, 39063118 - 39063073
Alignment:
Q  76 ttattcaacgaacctaaaaaattgttttttacctacaaatgtgacc 121  Q
    ||||||||||||| |||||||||||||||||| || ||||||||||    
T  39063118 ttattcaacgaacttaaaaaattgttttttacttataaatgtgacc 39063073  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 62
Target Start/End: Complemental strand, 14958953 - 14958921
Alignment:
Q  30 ctttttaaatttattgaataactaatgtatatg 62  Q
    ||||||||||| |||||||||||||||||||||    
T  14958953 ctttttaaattcattgaataactaatgtatatg 14958921  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 121
Target Start/End: Complemental strand, 40773010 - 40772974
Alignment:
Q  85 gaacctaaaaaattgttttttacctacaaatgtgacc 121  Q
    ||||||||||||||||||||||| || ||||||||||    
T  40773010 gaacctaaaaaattgttttttacttataaatgtgacc 40772974  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 65 - 122
Target Start/End: Complemental strand, 31719242 - 31719185
Alignment:
Q  65 aaatacattggttattcaacgaacctaaaaaattgttttttacctacaaatgtgacca 122  Q
    ||||||||| ||||||||| ||| ||||||| ||||||||||| || |||||||||||    
T  31719242 aaatacatttgttattcaatgaatctaaaaagttgttttttacttataaatgtgacca 31719185  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 105
Target Start/End: Original strand, 9733547 - 9733585
Alignment:
Q  67 atacattggttattcaacgaacctaaaaaattgtttttt 105  Q
    ||||||| ||||||||| |||||||||||||||||||||    
T  9733547 atacattagttattcaatgaacctaaaaaattgtttttt 9733585  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 103
Target Start/End: Original strand, 25931651 - 25931689
Alignment:
Q  65 aaatacattggttattcaacgaacctaaaaaattgtttt 103  Q
    ||||||||||||||||||| ||||||||||| |||||||    
T  25931651 aaatacattggttattcaatgaacctaaaaagttgtttt 25931689  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 121
Target Start/End: Complemental strand, 27279546 - 27279492
Alignment:
Q  67 atacattggttattcaacgaacctaaaaaattgttttttacctacaaatgtgacc 121  Q
    ||||||| ||||||||| |||||||||||||| |||||| | || ||||||||||    
T  27279546 atacattagttattcaatgaacctaaaaaattattttttgcttataaatgtgacc 27279492  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 59
Target Start/End: Complemental strand, 9550225 - 9550194
Alignment:
Q  28 gactttttaaatttattgaataactaatgtat 59  Q
    ||||||||||||||||||||||||||||||||    
T  9550225 gactttttaaatttattgaataactaatgtat 9550194  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 104
Target Start/End: Original strand, 30557007 - 30557046
Alignment:
Q  65 aaatacattggttattcaacgaacctaaaaaattgttttt 104  Q
    ||||||||||||||||||| ||||||||||| ||||||||    
T  30557007 aaatacattggttattcaatgaacctaaaaagttgttttt 30557046  T

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Target: scaffold0003 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 105
Target Start/End: Complemental strand, 320730 - 320692
Alignment:
Q  67 atacattggttattcaacgaacctaaaaaattgtttttt 105  Q
    ||||||| |||||||||| ||||||||||||||||||||    
T  320730 atacattagttattcaacaaacctaaaaaattgtttttt 320692  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 121
Target Start/End: Original strand, 674129 - 674185
Alignment:
Q  65 aaatacattggttattcaacgaacctaaaaaattgttttttacctacaaatgtgacc 121  Q
    ||||| ||| ||||||||| ||| ||||||||||||||||| | || ||||||||||    
T  674129 aaatatattagttattcaatgaatctaaaaaattgttttttgcttataaatgtgacc 674185  T

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