View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4195_high_12 (Length: 245)

Name: NF4195_high_12
Description: NF4195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4195_high_12
NF4195_high_12
[»] chr4 (8 HSPs)
chr4 (6-245)||(42769568-42769807)
chr4 (105-245)||(42743797-42743937)
chr4 (105-245)||(42753156-42753296)
chr4 (105-241)||(42717169-42717305)
chr4 (105-236)||(42762778-42762909)
chr4 (105-236)||(42734585-42734716)
chr4 (9-84)||(42762700-42762775)
chr4 (16-77)||(42734726-42734787)
[»] chr5 (1 HSPs)
chr5 (112-245)||(23040537-23040670)


Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 6 - 245
Target Start/End: Original strand, 42769568 - 42769807
Alignment:
Q  6 cacagacgccgaaatcacatcaacaccgtcaagtatggcagcttcgaaaccagccaaaatgtccgcttcatagcatccaccgcctacagcaagcggtggc 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||    
T  42769568 cacagacgccgaaatcacatcaacaccgtcaagtatggcagcttcgaaaccagccaaaatgtctgcttcatagcatccaccgcccacagcaagcggtggc 42769667  T
Q  106 caacataccttataggccgcaactcgtgcgttaggtgatccaccacttgctgttcctaggccattgccaaatacacttgcatttgcaacaaaatttcctc 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42769668 caacataccttataggccgcaactcgtgcgttaggtgatccaccacttgctgttcctaggccattgccaaatacacttgcatttgcaacaaaatttcctc 42769767  T
Q  206 ccgcggttgataaagtatgtgaaccatgaccatcaaagtc 245  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  42769768 ccgcggttgataaagtatgtgaaccatgaccatcaaagtc 42769807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 105 - 245
Target Start/End: Original strand, 42743797 - 42743937
Alignment:
Q  105 ccaacataccttataggccgcaactcgtgcgttaggtgatccaccacttgctgttcctaggccattgccaaatacacttgcatttgcaacaaaatttcct 204  Q
    |||||| ||||||||||| ||||||||||| || |||||||||||||||||||||||    ||||||||||||||||||||||| ||||| |||||||||    
T  42743797 ccaacaaaccttataggctgcaactcgtgcttttggtgatccaccacttgctgttccatttccattgccaaatacacttgcattggcaacgaaatttcct 42743896  T
Q  205 cccgcggttgataaagtatgtgaaccatgaccatcaaagtc 245  Q
    || || |||||||||||||||||||||||||| ||||||||    
T  42743897 ccagcagttgataaagtatgtgaaccatgaccttcaaagtc 42743937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 105 - 245
Target Start/End: Original strand, 42753156 - 42753296
Alignment:
Q  105 ccaacataccttataggccgcaactcgtgcgttaggtgatccaccacttgctgttcctaggccattgccaaatacacttgcatttgcaacaaaatttcct 204  Q
    |||||| ||||||||||| ||||||||||| || |||||||||||||||||||||||    ||||||||||||||||||||||| ||||| |||||||||    
T  42753156 ccaacaaaccttataggctgcaactcgtgcttttggtgatccaccacttgctgttccatttccattgccaaatacacttgcattggcaacgaaatttcct 42753255  T
Q  205 cccgcggttgataaagtatgtgaaccatgaccatcaaagtc 245  Q
    || || |||||||||||||||||||||||||| ||||||||    
T  42753256 ccagcagttgataaagtatgtgaaccatgaccttcaaagtc 42753296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 105 - 241
Target Start/End: Original strand, 42717169 - 42717305
Alignment:
Q  105 ccaacataccttataggccgcaactcgtgcgttaggtgatccaccacttgctgttcctaggccattgccaaatacacttgcatttgcaacaaaatttcct 204  Q
    |||||| |||||||||||  |||||||||| || || ||||||||||||||||||||   ||||| |||||||||||||||||| |||||||||||||||    
T  42717169 ccaacaaaccttataggctacaactcgtgcttttggcgatccaccacttgctgttccattgccatagccaaatacacttgcattagcaacaaaatttcct 42717268  T
Q  205 cccgcggttgataaagtatgtgaaccatgaccatcaa 241  Q
    || || |||||||||||||||| ||||||||||||||    
T  42717269 ccggcagttgataaagtatgtgtaccatgaccatcaa 42717305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 105 - 236
Target Start/End: Original strand, 42762778 - 42762909
Alignment:
Q  105 ccaacataccttataggccgcaactcgtgcgttaggtgatccaccacttgctgttcctaggccattgccaaatacacttgcatttgcaacaaaatttcct 204  Q
    |||||| ||||||||||| ||||||||||| || |||||||||||||||||||||||    ||||||||||||||||||||||| ||||| |||||||||    
T  42762778 ccaacaaaccttataggctgcaactcgtgcttttggtgatccaccacttgctgttccatttccattgccaaatacacttgcattagcaacgaaatttcct 42762877  T
Q  205 cccgcggttgataaagtatgtgaaccatgacc 236  Q
    || || ||||||||||| ||||||||||||||    
T  42762878 ccagcagttgataaagtgtgtgaaccatgacc 42762909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 105 - 236
Target Start/End: Complemental strand, 42734716 - 42734585
Alignment:
Q  105 ccaacataccttataggccgcaactcgtgcgttaggtgatccaccacttgctgttcctaggccattgccaaatacacttgcatttgcaacaaaatttcct 204  Q
    |||||| ||||||||||| | ||||||||| || || ||||||||||||||||||||    |||| |||||||||||||||||| |||||||||||||||    
T  42734716 ccaacaaaccttataggcggaaactcgtgcttttggcgatccaccacttgctgttccatttccatagccaaatacacttgcattagcaacaaaatttcct 42734617  T
Q  205 cccgcggttgataaagtatgtgaaccatgacc 236  Q
    || || ||||||||||||||||||||||||||    
T  42734616 ccagcagttgataaagtatgtgaaccatgacc 42734585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 9 - 84
Target Start/End: Original strand, 42762700 - 42762775
Alignment:
Q  9 agacgccgaaatcacatcaacaccgtcaagtatggcagcttcgaaaccagccaaaatgtccgcttcatagcatcca 84  Q
    |||| |||||| |||||||||||| |||  |||||||||||| ||||||||||||||||| || ||||| ||||||    
T  42762700 agacaccgaaagcacatcaacaccatcacttatggcagcttcaaaaccagccaaaatgtctgcatcataacatcca 42762775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 42734787 - 42734726
Alignment:
Q  16 gaaatcacatcaacaccgtcaagtatggcagcttcgaaaccagccaaaatgtccgcttcata 77  Q
    |||| |||||||||||| |||  |||||||||||| |||||||||||||| || || |||||    
T  42734787 gaaagcacatcaacaccatcacttatggcagcttcaaaaccagccaaaatatctgcatcata 42734726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 112 - 245
Target Start/End: Complemental strand, 23040670 - 23040537
Alignment:
Q  112 accttataggccgcaactcgtgcgttaggtgatccaccacttgctgttcctaggccattgccaaatacacttgcatttgcaacaaaatttcctcccgcgg 211  Q
    ||||||||||| |||||||| || || |||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||| |||||||||||  | |    
T  23040670 accttataggctgcaactcgagcttttggtgatccaccacttgctgttcctcggccattgccaaatacactcgcattagcaacgaaatttcctccaacag 23040571  T
Q  212 ttgataaagtatgtgaaccatgaccatcaaagtc 245  Q
    ||||||||||||||||||||||||||||||||||    
T  23040570 ttgataaagtatgtgaaccatgaccatcaaagtc 23040537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University