View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4195_high_3 (Length: 493)
Name: NF4195_high_3
Description: NF4195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4195_high_3 |
 | |
|
| [»] scaffold0402 (1 HSPs) |
| | |
|
| [»] scaffold0522 (1 HSPs) |
| | |
|
| [»] scaffold0137 (1 HSPs) |
| | |
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Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 14)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 217 - 475
Target Start/End: Complemental strand, 46512246 - 46511988
Alignment:
| Q |
217 |
caggatgcacaacgcgtatggttatttcacttgatcgaaagatagggaaatataaggttgttgactttgaagctcaacataaccaccttcttcttccacc |
316 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46512246 |
caggatgcacaacgcgtatgattatttcacttgatcgaaagatagggaaatataagtttgttgactttgaagctcaacataaccaccttcttcttccacc |
46512147 |
T |
|
| Q |
317 |
tgagtatgttcatatgattcgctcccatcgacacatatctgatgaacaagcatcacaaattgagcatgagtatttaggtgcctgcactgttatattctat |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
46512146 |
tgagtatgttcatatgattcgctcccatcgacacatatttgaggcacaagcatcacaaattgagcatgagtgtttaggtgcctgcactgttatattctat |
46512047 |
T |
|
| Q |
417 |
gtagcaagtttgaaagattaaaatatataccgcattactgtactttttcaagttcagtg |
475 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46512046 |
gtagcaagtttgaaagattaaaatatataccgcattactgtactttttcaagttcagtg |
46511988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 8 - 212
Target Start/End: Complemental strand, 46517108 - 46516904
Alignment:
| Q |
8 |
gagcacagaacagtggaagtgaatggaatcaaaatgcatgtcgcagagaaaggaaaagaaggaccaatagtattgttccttcatggttttcctgaaatct |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46517108 |
gagcacagaacagtggaagtgaatggaatcaaaatgcatgtcgcagagaaaggaaaagaaggaccaatagtattgttccttcatggttttcctgaaatct |
46517009 |
T |
|
| Q |
108 |
ggtactcatggcgccaccagattgttgctctcagctcccttggctaccgcaccgtggctccagatctccgtggctacggtgacactgatgctcccacttc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
46517008 |
ggtactcatggcgccaccagattgttgctctcagctcccttggctaccgcaccgtggctccagatctctgtggctacggtgacactgatgctcccacttc |
46516909 |
T |
|
| Q |
208 |
agtta |
212 |
Q |
| |
|
||||| |
|
|
| T |
46516908 |
agtta |
46516904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 218 - 378
Target Start/End: Original strand, 46165564 - 46165724
Alignment:
| Q |
218 |
aggatgcacaacgcgtatggttatttcacttgatcgaaagatagggaaatataaggttgttgactttgaagctcaacataaccaccttcttcttccacct |
317 |
Q |
| |
|
|||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
46165564 |
aggatgcacagcgtgtatggttatttcacttgatcgaaagatagggaaatataaggttgttgactttgaagctcaacataaccaccttctggttccacct |
46165663 |
T |
|
| Q |
318 |
gagtatgttcatatgattcgctcccatcgacacatatctgatgaacaagcatcacaaattg |
378 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
46165664 |
gagtatgttcatatgattcgctcccatcgacacatatctgaggcacaagcatcacaaattg |
46165724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 11 - 212
Target Start/End: Complemental strand, 46524812 - 46524611
Alignment:
| Q |
11 |
cacagaacagtggaagtgaatggaatcaaaatgcatgtcgcagagaaaggaaaagaaggaccaatagtattgttccttcatggttttcctgaaatctggt |
110 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| | || |||||||| ||||||||||| | || |||||||||||||| || || ||| |||||| |
|
|
| T |
46524812 |
cacagaagagtggaagtgaatggaatcaaaatgcatattgctgagaaaggtaaagaaggacctgttgtcttgttccttcatggcttcccagaactctggt |
46524713 |
T |
|
| Q |
111 |
actcatggcgccaccagattgttgctctcagctcccttggctaccgcaccgtggctccagatctccgtggctacggtgacactgatgctcccacttcagt |
210 |
Q |
| |
|
| |||||||||||||||||||| |||||||||||||| |||||||| | || ||||| |||||||||||||| |||||||| |||||||| ||||||| |
|
|
| T |
46524712 |
attcatggcgccaccagattgtagctctcagctccctcggctaccgtgctgttgctcccgatctccgtggctatggtgacaccgatgctccgtcttcagt |
46524613 |
T |
|
| Q |
211 |
ta |
212 |
Q |
| |
|
|| |
|
|
| T |
46524612 |
ta |
46524611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 8 - 201
Target Start/End: Original strand, 46322744 - 46322937
Alignment:
| Q |
8 |
gagcacagaacagtggaagtgaatggaatcaaaatgcatgtcgcagagaaaggaaaagaaggaccaatagtattgttccttcatggttttcctgaaatct |
107 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||| | || |||||||| ||||||||||| | || ||||||||||| || ||||||||| ||| |
|
|
| T |
46322744 |
gagcacagaagagtggaagtgaatggaatcaaaatgcatattgctgagaaaggtaaagaaggacctgttgttttgttccttcacggctttcctgaactct |
46322843 |
T |
|
| Q |
108 |
ggtactcatggcgccaccagattgttgctctcagctcccttggctaccgcaccgtggctccagatctccgtggctacggtgacactgatgctcc |
201 |
Q |
| |
|
||||||| |||||||||||||||| |||||| |||| || ||||||||| |||| ||||| ||||| |||||||| ||||||||||| ||||| |
|
|
| T |
46322844 |
ggtactcttggcgccaccagattgcggctctcggctctctcggctaccgcgccgtagctccggatctacgtggctatggtgacactgaggctcc |
46322937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 11 - 208
Target Start/End: Complemental strand, 46479316 - 46479119
Alignment:
| Q |
11 |
cacagaacagtggaagtgaatggaatcaaaatgcatgtcgcagagaaaggaaaagaaggaccaatagtattgttccttcatggttttcctgaaatctggt |
110 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||| | |||||||||||||||||||| ||| | || ||||||||||| || || |||||| |||||| |
|
|
| T |
46479316 |
cacagaacggtggaagtgaatggcatcaaaatgcatattgcagagaaaggaaaagaaggtccagttgttttgttccttcacggcttccctgaactctggt |
46479217 |
T |
|
| Q |
111 |
actcatggcgccaccagattgttgctctcagctcccttggctaccgcaccgtggctccagatctccgtggctacggtgacactgatgctcccacttca |
208 |
Q |
| |
|
| ||||||||||||||||||| |||||| ||||||| || ||||| | || ||||||||||| ||||||||||| ||||| ||||||||| ||||| |
|
|
| T |
46479216 |
attcatggcgccaccagattgctgctcttggctccctcggttaccgtgctgttgctccagatcttcgtggctacggcgacaccgatgctcccgcttca |
46479119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 11 - 208
Target Start/End: Complemental strand, 46520746 - 46520549
Alignment:
| Q |
11 |
cacagaacagtggaagtgaatggaatcaaaatgcatgtcgcagagaaaggaaaagaaggaccaatagtattgttccttcatggttttcctgaaatctggt |
110 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||| | |||||||||||||||||||| ||| | || ||||||||||| || || |||||| |||||| |
|
|
| T |
46520746 |
cacagaacggtggaagtgaatggcatcaaaatgcatattgcagagaaaggaaaagaaggtccagttgttttgttccttcacggcttccctgaactctggt |
46520647 |
T |
|
| Q |
111 |
actcatggcgccaccagattgttgctctcagctcccttggctaccgcaccgtggctccagatctccgtggctacggtgacactgatgctcccacttca |
208 |
Q |
| |
|
| ||||||||||||||||||| |||||| ||||||| || ||||| | || ||||||||||| ||||||||||| ||||| ||||||||| ||||| |
|
|
| T |
46520646 |
attcatggcgccaccagattgctgctcttggctccctcggttaccgtgctgttgctccagatcttcgtggctacggcgacaccgatgctcccgcttca |
46520549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 11 - 201
Target Start/End: Complemental strand, 46532365 - 46532175
Alignment:
| Q |
11 |
cacagaacagtggaagtgaatggaatcaaaatgcatgtcgcagagaaaggaaaagaaggaccaatagtattgttccttcatggttttcctgaaatctggt |
110 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| | || || ||||||||||||||||| | || |||||||||||||| || || ||| |||||| |
|
|
| T |
46532365 |
cacagaacagtggaggtgaatggaatcaaaatgcatattgctgaaaaaggaaaagaaggacctgttgtcttgttccttcatggcttcccagaactctggt |
46532266 |
T |
|
| Q |
111 |
actcatggcgccaccagattgttgctctcagctcccttggctaccgcaccgtggctccagatctccgtggctacggtgacactgatgctcc |
201 |
Q |
| |
|
| |||||||||||||| ||||| ||||| ||||||| || |||||| |||| ||||||||||| |||||||| |||||||| || ||||| |
|
|
| T |
46532265 |
attcatggcgccaccaaattgtagctcttggctccctcggttaccgcgccgttgctccagatctgcgtggctatggtgacaccgaggctcc |
46532175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 14 - 197
Target Start/End: Original strand, 46326455 - 46326638
Alignment:
| Q |
14 |
agaacagtggaagtgaatggaatcaaaatgcatgtcgcagagaaaggaaaagaaggaccaatagtattgttccttcatggttttcctgaaatctggtact |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | || |||||||| ||||||||||| | || ||||||||||| || ||||||||| ||||||||| |
|
|
| T |
46326455 |
agaacagtggaagtgaatggaatcaaaatgcatattgctgagaaaggtaaagaaggacctgttgttttgttccttcacggctttcctgaactctggtact |
46326554 |
T |
|
| Q |
114 |
catggcgccaccagattgttgctctcagctcccttggctaccgcaccgtggctccagatctccgtggctacggtgacactgatg |
197 |
Q |
| |
|
| |||||||||||||||| |||||| | ||||| || ||||| | || ||||| |||||||||||||| |||||||| |||| |
|
|
| T |
46326555 |
cttggcgccaccagattgcggctctcggatccctcggttaccgtgctgttgctcccgatctccgtggctatggtgacacagatg |
46326638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 11 - 201
Target Start/End: Complemental strand, 46490518 - 46490328
Alignment:
| Q |
11 |
cacagaacagtggaagtgaatggaatcaaaatgcatgtcgcagagaaaggaaaagaaggaccaatagtattgttccttcatggttttcctgaaatctggt |
110 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| | || |||||||| ||||||||||| | || ||||||||||||| || |||||| |||||| |
|
|
| T |
46490518 |
cacagaacagtggaagtgaatggcatcaaaatgcatattgctgagaaaggtaaagaaggacccgttgtcctgttccttcatggcttccctgaactctggt |
46490419 |
T |
|
| Q |
111 |
actcatggcgccaccagattgttgctctcagctcccttggctaccgcaccgtggctccagatctccgtggctacggtgacactgatgctcc |
201 |
Q |
| |
|
| |||||||||||||||||| |||||| ||||||| || |||||| | || ||||||||||||||||| || || ||||| |||||||| |
|
|
| T |
46490418 |
attcatggcgccaccagatttctgctcttggctccctcggttaccgcgctgttgctccagatctccgtggttatggcgacaccgatgctcc |
46490328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 8 - 197
Target Start/End: Complemental strand, 46494819 - 46494630
Alignment:
| Q |
8 |
gagcacagaacagtggaagtgaatggaatcaaaatgcatgtcgcagagaaaggaaaagaaggaccaatagtattgttccttcatggttttcctgaaatct |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| | || || ||||||||||||||||| | || |||||||||| || || |||||| ||| |
|
|
| T |
46494819 |
gagcacagaacagtggaagtgaatggaatcaaaatgcatattgctgaaaaaggaaaagaaggacctgttgtcctgttccttcacggattccctgaactct |
46494720 |
T |
|
| Q |
108 |
ggtactcatggcgccaccagattgttgctctcagctcccttggctaccgcaccgtggctccagatctccgtggctacggtgacactgatg |
197 |
Q |
| |
|
||||||| |||||||||||||||| |||||| |||| || || ||||| | |||||||| ||||| ||||| || || || ||||||| |
|
|
| T |
46494719 |
ggtactcttggcgccaccagattgcggctctcggctctctcggttaccgggctgtggctcccgatcttcgtggttatggcgatactgatg |
46494630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 229 - 378
Target Start/End: Complemental strand, 5959956 - 5959810
Alignment:
| Q |
229 |
cgcgtatggttatttcacttgatcgaaagatagggaaatataaggttgttgactttgaagctcaacataaccaccttcttcttccacctgagtatgttca |
328 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||| ||||||||| |||||||||||| |||| ||||||||||| |||| ||||||| ||||||| |
|
|
| T |
5959956 |
cgcgtatggttatttcactcgatcggaagatagagaaatataaagttgttgactttatagctgaacataaccacgaacttca---acctgagcatgttca |
5959860 |
T |
|
| Q |
329 |
tatgattcgctcccatcgacacatatctgatgaacaagcatcacaaattg |
378 |
Q |
| |
|
|||||||||||| ||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
5959859 |
tatgattcgctctcatcgacgcatatctgatacacaagcatcacaaattg |
5959810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 231 - 377
Target Start/End: Complemental strand, 28214902 - 28214756
Alignment:
| Q |
231 |
cgtatggttatttcacttgatcgaaagatagggaaatataaggttgttgactttgaagctcaacataaccaccttcttcttccacctgagtatgttcata |
330 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| |||||||||||||||| | |||| ||||||||||||| || | ||||||||||| | |
|
|
| T |
28214902 |
cgtatgggtatttcacttgatcgaaagatagggaaatacaaggttgttgactttgtactagaacacaaccaccttcttcaaccgcaagagtatgttcaca |
28214803 |
T |
|
| Q |
331 |
tgattcgctcccatcgacacatatctgatgaacaagcatcacaaatt |
377 |
Q |
| |
|
|||||||||| ||||| | ||||||||| | |||||||||||||||| |
|
|
| T |
28214802 |
tgattcgctctcatcgtcgcatatctgaggtacaagcatcacaaatt |
28214756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 232 - 378
Target Start/End: Original strand, 4127828 - 4127971
Alignment:
| Q |
232 |
gtatggttatttcacttgatcgaaagatagggaaatataaggttgttgactttgaagctcaacataaccaccttcttcttccacctgagtatgttcatat |
331 |
Q |
| |
|
|||||||||||||||| ||||| ||||||| ||||||||| |||||||||||| |||| ||||||||||| |||| ||||||| |||||||||| |
|
|
| T |
4127828 |
gtatggttatttcactcgatcggaagatagagaaatataaagttgttgactttatagctgaacataaccac---gaacttcaacctgagcatgttcatat |
4127924 |
T |
|
| Q |
332 |
gattcgctcccatcgacacatatctgatgaacaagcatcacaaattg |
378 |
Q |
| |
|
||||| ||| ||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
4127925 |
gattcactctcatcgacgcatatctgatacacaagcatcacaaattg |
4127971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 138; Significance: 6e-72; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 217 - 378
Target Start/End: Original strand, 19870612 - 19870773
Alignment:
| Q |
217 |
caggatgcacaacgcgtatggttatttcacttgatcgaaagatagggaaatataaggttgttgactttgaagctcaacataaccaccttcttcttccacc |
316 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
19870612 |
caggatgcacaacacgtatggttatttcacttgatcgaaagatagggaaatataaggttgttgactttgaagctcaacataaccaccttctggttccacc |
19870711 |
T |
|
| Q |
317 |
tgagtatgttcatatgattcgctcccatcgacacatatctgatgaacaagcatcacaaattg |
378 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||| |
|
|
| T |
19870712 |
tgagtatgttcatatgattcgctcccatcgacacatatctgaggcacaagcatcaaaaattg |
19870773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 217 - 378
Target Start/End: Original strand, 48987147 - 48987308
Alignment:
| Q |
217 |
caggatgcacaacgcgtatggttatttcacttgatcgaaagatagggaaatataaggttgttgactttgaagctcaacataaccaccttcttcttccacc |
316 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
48987147 |
caggatgcacagcgcgtatggttatttcacttgatcgaaagatagggaaatataaggttgttgactttgaatctcaacataaccaccttctggttccacc |
48987246 |
T |
|
| Q |
317 |
tgagtatgttcatatgattcgctcccatcgacacatatctgatgaacaagcatcacaaattg |
378 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
48987247 |
tgagtatgttcatatgattcgctcccatcgacacatatctgaggcacaagcatcacaaattg |
48987308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 264 - 378
Target Start/End: Original strand, 25488280 - 25488394
Alignment:
| Q |
264 |
aaatataaggttgttgactttgaagctcaacataaccaccttcttcttccacctgagtatgttcatatgattcgctcccatcgacacatatctgatgaac |
363 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | || |
|
|
| T |
25488280 |
aaatataaggttgttgactttgaagctcaacataaccaccttctggttccacctgagtatgttcatatgattcgctcccatcgacacatatctgaggcac |
25488379 |
T |
|
| Q |
364 |
aagcatcacaaattg |
378 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
25488380 |
aagcatcacaaattg |
25488394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 231 - 377
Target Start/End: Complemental strand, 8146296 - 8146150
Alignment:
| Q |
231 |
cgtatggttatttcacttgatcgaaagatagggaaatataaggttgttgactttgaagctcaacataaccaccttcttcttccacctgagtatgttcata |
330 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| |||||||||||||||| | |||| ||||||||||||| || | ||||||||||| | |
|
|
| T |
8146296 |
cgtatgggtatttcacttgatcgaaagatagggaaatacaaggttgttgactttgtactagaacacaaccaccttcttcaaccgcaagagtatgttcaca |
8146197 |
T |
|
| Q |
331 |
tgattcgctcccatcgacacatatctgatgaacaagcatcacaaatt |
377 |
Q |
| |
|
|||||||||| ||||| | ||||||||| | |||||||||||||||| |
|
|
| T |
8146196 |
tgattcgctctcatcgtcgcatatctgaggtacaagcatcacaaatt |
8146150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 217 - 265
Target Start/End: Complemental strand, 25487826 - 25487778
Alignment:
| Q |
217 |
caggatgcacaacgcgtatggttatttcacttgatcgaaagatagggaa |
265 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25487826 |
caggatgcacagcgcgtatggttatttcacttgatcgaaagatagggaa |
25487778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 37152192 - 37152139
Alignment:
| Q |
8 |
gagcacagaacagtggaagtgaatggaatcaaaatgcatgtcgcagagaaagga |
61 |
Q |
| |
|
|||||||||| ||| ||||| ||||| || ||||||||||| |||||||||||| |
|
|
| T |
37152192 |
gagcacagaatagtagaagtaaatggcattaaaatgcatgttgcagagaaagga |
37152139 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0402 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: scaffold0402
Description:
Target: scaffold0402; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 229 - 378
Target Start/End: Complemental strand, 14297 - 14151
Alignment:
| Q |
229 |
cgcgtatggttatttcacttgatcgaaagatagggaaatataaggttgttgactttgaagctcaacataaccaccttcttcttccacctgagtatgttca |
328 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||| ||||||||| |||||||||||| |||| ||||||||||| |||| ||||||| ||||||| |
|
|
| T |
14297 |
cgcgtatggttatttcactcgatcggaagatagagaaatataaagttgttgactttatagctgaacataaccacgaacttca---acctgagcatgttca |
14201 |
T |
|
| Q |
329 |
tatgattcgctcccatcgacacatatctgatgaacaagcatcacaaattg |
378 |
Q |
| |
|
|||||||||||| ||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
14200 |
tatgattcgctctcatcgacgcatatctgatacacaagcatcacaaattg |
14151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 229 - 378
Target Start/End: Original strand, 6827665 - 6827811
Alignment:
| Q |
229 |
cgcgtatggttatttcacttgatcgaaagatagggaaatataaggttgttgactttgaagctcaacataaccaccttcttcttccacctgagtatgttca |
328 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||| ||||||||| |||||||||||| |||| ||||||||||| |||| ||||||| ||||||| |
|
|
| T |
6827665 |
cgcgtatggttatttcactcgatcggaagatagagaaatataaagttgttgactttatagcttaacataaccac---gaacttcaacctgagcatgttca |
6827761 |
T |
|
| Q |
329 |
tatgattcgctcccatcgacacatatctgatgaacaagcatcacaaattg |
378 |
Q |
| |
|
|||||||||||| ||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
6827762 |
tatgattcgctctcatcgacgcatatctgatacacaagcatcacaaattg |
6827811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0522 (Bit Score: 71; Significance: 6e-32; HSPs: 1)
Name: scaffold0522
Description:
Target: scaffold0522; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 231 - 377
Target Start/End: Original strand, 5632 - 5778
Alignment:
| Q |
231 |
cgtatggttatttcacttgatcgaaagatagggaaatataaggttgttgactttgaagctcaacataaccaccttcttcttccacctgagtatgttcata |
330 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| |||||||||||||||| | |||| ||||||||||||| || | ||||||||||| | |
|
|
| T |
5632 |
cgtatgggtatttcacttgatcgaaagatagggaaatacaaggttgttgactttgtactagaacacaaccaccttcttcaaccgcaagagtatgttcaca |
5731 |
T |
|
| Q |
331 |
tgattcgctcccatcgacacatatctgatgaacaagcatcacaaatt |
377 |
Q |
| |
|
|||||||||| ||||| | ||||||||| | |||||||||||||||| |
|
|
| T |
5732 |
tgattcgctctcatcgtcgcatatctgaggtacaagcatcacaaatt |
5778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 229 - 378
Target Start/End: Original strand, 17939646 - 17939792
Alignment:
| Q |
229 |
cgcgtatggttatttcacttgatcgaaagatagggaaatataaggttgttgactttgaagctcaacataaccaccttcttcttccacctgagtatgttca |
328 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||| ||||||||| |||||||||||| |||| ||||||||||| |||| ||||||| ||||||| |
|
|
| T |
17939646 |
cgcgtatggttatttcactcgatcggaagatagagaaatataaagttgttgactttatagctgaacataaccac---gaacttcaacctgagcatgttca |
17939742 |
T |
|
| Q |
329 |
tatgattcgctcccatcgacacatatctgatgaacaagcatcacaaattg |
378 |
Q |
| |
|
|||||||| ||| ||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
17939743 |
tatgattcactctcatcgacgcatatctgatacacaagcatcacaaattg |
17939792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 4e-30; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 229 - 378
Target Start/End: Original strand, 36383408 - 36383554
Alignment:
| Q |
229 |
cgcgtatggttatttcacttgatcgaaagatagggaaatataaggttgttgactttgaagctcaacataaccaccttcttcttccacctgagtatgttca |
328 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||| ||||||||| |||||||||||| |||| ||||||||||| |||| || |||| ||||||| |
|
|
| T |
36383408 |
cgcgtatggttatttcactcgatcggaagatagagaaatataaagttgttgactttatagctgaacataaccac---gaacttcaacatgagcatgttca |
36383504 |
T |
|
| Q |
329 |
tatgattcgctcccatcgacacatatctgatgaacaagcatcacaaattg |
378 |
Q |
| |
|
|||||||||||| ||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
36383505 |
tatgattcgctctcatcgacgcatatctgatacacaagcatcacaaattg |
36383554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 88038 - 88091
Alignment:
| Q |
8 |
gagcacagaacagtggaagtgaatggaatcaaaatgcatgtcgcagagaaagga |
61 |
Q |
| |
|
|||||||||| ||| ||||| ||||| || ||||||||||| |||||||||||| |
|
|
| T |
88038 |
gagcacagaatagtagaagtaaatggcattaaaatgcatgttgcagagaaagga |
88091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 4e-30; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 231 - 358
Target Start/End: Complemental strand, 49573035 - 49572908
Alignment:
| Q |
231 |
cgtatggttatttcacttgatcgaaagatagggaaatataaggttgttgactttgaagctcaacataaccaccttcttcttccacctgagtatgttcata |
330 |
Q |
| |
|
||||||||||||||||||||||| ||||| || ||||| |||||| ||||||||| ||| |||||| ||||||||||| ||| ||||||||||| ||| |
|
|
| T |
49573035 |
cgtatggttatttcacttgatcggaagattggaaaatacaaggttattgactttgtagcgggacataatcaccttcttctgccagctgagtatgtttata |
49572936 |
T |
|
| Q |
331 |
tgattcgctcccatcgacacatatctga |
358 |
Q |
| |
|
|||||||||| ||| ||||||||||||| |
|
|
| T |
49572935 |
tgattcgctctcattgacacatatctga |
49572908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 231 - 358
Target Start/End: Original strand, 3904846 - 3904973
Alignment:
| Q |
231 |
cgtatggttatttcacttgatcgaaagatagggaaatataaggttgttgactttgaagctcaacataaccaccttcttcttccacctgagtatgttcata |
330 |
Q |
| |
|
||||||||||||||||||||||||||||| || || || |||||||||||||||| |||||||||||| || |||||| || || | |||| |||||| |
|
|
| T |
3904846 |
cgtatggttatttcacttgatcgaaagattggtaagtacaaggttgttgactttgtagctcaacataatcatcttcttgaaccgccagggtattttcata |
3904945 |
T |
|
| Q |
331 |
tgattcgctcccatcgacacatatctga |
358 |
Q |
| |
|
||||||||||||||| |||||||| |
|
|
| T |
3904946 |
ctcctcgctcccatcgacaaatatctga |
3904973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 113 - 201
Target Start/End: Original strand, 7475308 - 7475396
Alignment:
| Q |
113 |
tcatggcgccaccagattgttgctctcagctcccttggctaccgcaccgtggctccagatctccgtggctacggtgacactgatgctcc |
201 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||| ||||||| ||||||| | |||||||||||||| |||||||| ||| |||| |
|
|
| T |
7475308 |
tcatggcgccaccagattatagctctcagctccctcggctaccatgtcgtggctactgatctccgtggctatggtgacaccgattctcc |
7475396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 9e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 231 - 378
Target Start/End: Complemental strand, 5358515 - 5358368
Alignment:
| Q |
231 |
cgtatggttatttcacttgatcgaaagatagggaaatataaggttgttgactttgaagctcaacataaccaccttcttcttccacctgagtatgttcata |
330 |
Q |
| |
|
||||||||||||||||||| ||| ||||| || ||||| |||||| |||||| || ||| |||||| ||||||||||| ||| ||||||||||| ||| |
|
|
| T |
5358515 |
cgtatggttatttcacttgttcggaagattggaaaatacaaggttattgactctgtagcgagacataatcaccttcttctgccagctgagtatgtttata |
5358416 |
T |
|
| Q |
331 |
tgattcgctcccatcgacacatatctgatgaacaagcatcacaaattg |
378 |
Q |
| |
|
||||| |||| ||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
5358415 |
tgatttgctctcatcgacacatatctgagtcacaagcatcccaaattg |
5358368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0137 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0137
Description:
Target: scaffold0137; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 231 - 358
Target Start/End: Original strand, 11701 - 11828
Alignment:
| Q |
231 |
cgtatggttatttcacttgatcgaaagatagggaaatataaggttgttgactttgaagctcaacataaccaccttcttcttccacctgagtatgttcata |
330 |
Q |
| |
|
||||||||||||||||||||||||||||| || || || |||||||||||||||| |||||||||||| || |||||| || || | |||| |||||| |
|
|
| T |
11701 |
cgtatggttatttcacttgatcgaaagattggtaagtacaaggttgttgactttgtagctcaacataatcatcttcttgaaccgccagggtattttcata |
11800 |
T |
|
| Q |
331 |
tgattcgctcccatcgacacatatctga |
358 |
Q |
| |
|
||||||||||||||| |||||||| |
|
|
| T |
11801 |
ctcctcgctcccatcgacaaatatctga |
11828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 229 - 303
Target Start/End: Original strand, 29760549 - 29760623
Alignment:
| Q |
229 |
cgcgtatggttatttcacttgatcgaaagatagggaaatataaggttgttgactttgaagctcaacataaccacc |
303 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||||||||| |||||||||||| |||| |||||||||||| |
|
|
| T |
29760549 |
cgcgtatggttatttcacttgatcagaagatagagaaatataaagttgttgactttatagctgaacataaccacc |
29760623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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