View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4195_high_4 (Length: 474)
Name: NF4195_high_4
Description: NF4195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4195_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 440; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 11 - 458
Target Start/End: Complemental strand, 50590222 - 50589775
Alignment:
| Q |
11 |
cacagaaacattttggtattgacctggatttgctacccttaaagataaaattcgttccttaacatactcggacactttatctctaagttccattccgatc |
110 |
Q |
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| T |
50590222 |
cacagaaacattttggtattgacctggatttgctacccttaaagataaaattcgttccttaacatactcggacactttatctctaagttccattccgatc |
50590123 |
T |
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| Q |
111 |
atcaatgtttctgggaacagagtggaaagactgataagcagccctccaaaaccacaaccaatatcggcaaacttaatctttttgcaactatcagctttgt |
210 |
Q |
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| T |
50590122 |
atcaatgtttctgggaacagagtggaaagactgatgagcagccctccaaaaccacaaccaatatcggcaaacttaatctttttgcaactatcagctttgt |
50590023 |
T |
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| Q |
211 |
cagacgagggaaagaattgaggataatggagggaatagtcaacatgactgggtgataatggcacagggaaatgagagtcactgagagggttgctgtgtgc |
310 |
Q |
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| T |
50590022 |
cagacgagggaaagaattgaggataatggagggaatagtcaacatgactgggtgataatggcacagggaaatgagagtcactgagagggttgctgtgtgc |
50589923 |
T |
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| Q |
311 |
tcgtgctcgatagaagcgctttcgaggcaatcctgtagacttgctgaatgttgaatttccaccagtctcaggcatgtctgattattcagactgcaacata |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
50589922 |
tcgtgctcgatagaagcgctttcgaggcaatcctgtagacttgctgaatgttgaatttccaccagtctcaggcatgtctgtttattcagactgcaacata |
50589823 |
T |
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| Q |
411 |
gtcaaagcgagaatcttcagaataaaggggatacacgattgataaagt |
458 |
Q |
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| T |
50589822 |
gtcaaagcgagaatcttcagaataaaggggatacacgattgataaagt |
50589775 |
T |
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