View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4195_low_1 (Length: 766)
Name: NF4195_low_1
Description: NF4195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4195_low_1 |
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| [»] scaffold0323 (1 HSPs) |
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| [»] scaffold0032 (2 HSPs) |
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| [»] scaffold0402 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 415; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 21 - 488
Target Start/End: Original strand, 22036305 - 22036768
Alignment:
| Q |
21 |
catgagatgtcaaaaggttggctcaattttagaacaaatgcagaaaggattttcattaggattttagtaaatcaaacaatagaattgaaaaggttgatca |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |
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| T |
22036305 |
catgagatgtcaaaaggttggctcaattttagaacaaatgcagaaaggattttcattaggattttagtaaatcaaacaattggattgaaaaggttgatca |
22036404 |
T |
|
| Q |
121 |
tgcatgtctcaatttagattgcattgtgaatgtctcacatttacaactatcctaggatcaaaacattaatgtgaaataaattctaaatgaaatatcattt |
220 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22036405 |
tgcatgtctcaatttagattgcattgtgaatgtctcacatttacaactatcctaggatcaaaacattaatgtgaaataaattctaaatgaaatatcattt |
22036504 |
T |
|
| Q |
221 |
caggttgataacatggttaaatttgaatcacgcccaacacaatcctcacaaataaaaagtgaaatttacactcgtatatgaagtgggactcacatccgac |
320 |
Q |
| |
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|||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22036505 |
caggttgataacatggttaaatttgaattacgtccaacacaatcctcacaaataaaaagtgaaatttacactcgtatatgaagtgggactcacatccgac |
22036604 |
T |
|
| Q |
321 |
atcgtgttaacatcataatcaagtcagacatacatcgaagcatgctcatcggaaagcatcaagtatagatcacaaaagtcttctaagggttgtaatgagg |
420 |
Q |
| |
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| ||||||||||| || |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
22036605 |
aacgtgttaacattatgatcaagtcagacatacatcgaagcatgctcatcggaaagcttcaagtatagatcacaaaagtcttctaagggttgtaatg--- |
22036701 |
T |
|
| Q |
421 |
caggctatgttacaagaaattgtcatttacttgagaaatgtttcaaaaaggccttatagtatggaaac |
488 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
22036702 |
-aggctatgttacaagaaattgtcatttacttgagaaatgtttcaaaaaggccttatagtagggaaac |
22036768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 485 - 761
Target Start/End: Original strand, 22037237 - 22037515
Alignment:
| Q |
485 |
aaacttgcttcatttggagtgcatgctcagactttttcttggtgggattatctaccttctcctttatttgggacaactttttcacaacatattaggccta |
584 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22037237 |
aaacttgcttcatttggaatgcatgctcagactttttcttggtgggattatctaccttctcctttatttgggacaactttttcacaacatattaggccta |
22037336 |
T |
|
| Q |
585 |
ccgtaatttata--atttatatatcatttgtttcctaggttaggttaatgtcctactatatatggtttttgttttctctatgtctttagcactaaagttt |
682 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22037337 |
ccgtaatttatataatttatatatcatttgtttcctaggttaggttaatgtcctactatatatggtttttgttttctctatgtctttagcactaaagttt |
22037436 |
T |
|
| Q |
683 |
tgggattctgcaaattaaataattattgggttactgtgtgacaacacagtttaaatgtaattattcataattgatgatg |
761 |
Q |
| |
|
|||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22037437 |
tgggattctgcaaattaaatgattattgcgttactgtgtgacaacacagtttaaatgtaattattcataattgatgatg |
22037515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0323 (Bit Score: 112; Significance: 3e-56; HSPs: 1)
Name: scaffold0323
Description:
Target: scaffold0323; HSP #1
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 21 - 476
Target Start/End: Complemental strand, 9491 - 9029
Alignment:
| Q |
21 |
catgagatgtcaaaaggttggctcaattttagaacaaatgcagaaaggattttcattaggattttagtaaatcaaacaatagaattgaaaaggttgatca |
120 |
Q |
| |
|
|||||| || || |||||| ||||| |||||||| |||||| || |||| ||| | | ||||||||||||||||||| | ||||||||| ||||||| |
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|
| T |
9491 |
catgaggtgccagaaggtttgctcagttttagaatgaatgcaaaagagattctcacaaagtttttagtaaatcaaacaattggattgaaaagtttgatca |
9392 |
T |
|
| Q |
121 |
tgcatgtctcaatttagattgcattgtgaatgtctcacatttacaactatcctaggatcaaaacattaatgtgaaataaattctaaatg-aaatatcatt |
219 |
Q |
| |
|
|||||| |||||||||||||| ||||| | | ||||||||||||||||||||||||||||||||| |||| ||| ||| ||||||| |||||||||| |
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|
| T |
9391 |
tgcatgactcaatttagattgtattgttcaagactcacatttacaactatcctaggatcaaaacataaatgccaaaccaatcctaaatgtaaatatcatt |
9292 |
T |
|
| Q |
220 |
tcag---------gttgataacatggttaaatttgaatcacgcccaacaca--atcctcacaaataaaaagtgaaatttacactcgtatatgaagtggga |
308 |
Q |
| |
|
||| || ||| || ||||| | |||||||| || |||||| |||||||||| ||||||||||||||||| | |||||||||||||| |
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|
| T |
9291 |
tcattcattcaaagtcaatagcaaagttaagtgtgaatcacacctaacacacaatcctcacaagtaaaaagtgaaatttacgtttatatatgaagtggga |
9192 |
T |
|
| Q |
309 |
ctcacatccgacatcgtgttaacatcataatcaagtcagacatacatcgaagcatgctcatcggaaagcatcaagtatagatcacaaaagtcttctaagg |
408 |
Q |
| |
|
||||||||||||| || |||| || | |||||| || |||||||| || ||| |||| |||| ||||||| ||||||||| || |||| ||||| |
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| T |
9191 |
ctcacatccgacaatgttctaacgtcctggtcaagttaggcatacatccaaacatattcatttgaaaacatcaagcatagatcactaagatctt-taagg |
9093 |
T |
|
| Q |
409 |
gttgtaatgaggcaggctatgttacaagaaattgtcatttacttgagaaatgtttcaaaaaggcctta |
476 |
Q |
| |
|
||||||||||||| || ||||||||||||||||||||| || |||||||||||||||||||||| |
|
|
| T |
9092 |
gttgtaatgaggccgg----gttacaagaaattgtcatttatctgggaaatgtttcaaaaaggcctta |
9029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0032 (Bit Score: 90; Significance: 4e-43; HSPs: 2)
Name: scaffold0032
Description:
Target: scaffold0032; HSP #1
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 266 - 476
Target Start/End: Complemental strand, 25306 - 25101
Alignment:
| Q |
266 |
tcacaaataaaaagtgaaatttacactcgtatatgaagtgggactcacatccgacatcgtgttaacatcataatcaagtcagacatacatcgaagcatgc |
365 |
Q |
| |
|
|||||| ||||||||||||||||| ||| ||| ||||||||||||||||||||||| ||| ||||||| | ||||||| || |||||||| |||||| |
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|
| T |
25306 |
tcacaagtaaaaagtgaaatttacgctcatatgtgaagtgggactcacatccgacaatgtgctaacatcctgatcaagttaggcatacatccaagcatat |
25207 |
T |
|
| Q |
366 |
tcatcggaaagcatcaagtatagatcacaaaagtcttctaagggttgtaatgaggcaggctatgttacaagaaattgtcatttacttgagaaatgtttca |
465 |
Q |
| |
|
|||| |||||||||||| ||||||||| || ||||| |||||||||||||||||| || ||||||||||||||||||||| | ||||||||||| |
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|
| T |
25206 |
tcatttgaaagcatcaagcatagatcactaaggtctt-taagggttgtaatgaggccgg----gttacaagaaattgtcatttatctaggaaatgtttca |
25112 |
T |
|
| Q |
466 |
aaaaggcctta |
476 |
Q |
| |
|
||||||||||| |
|
|
| T |
25111 |
aaaaggcctta |
25101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0032; HSP #2
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 82 - 208
Target Start/End: Complemental strand, 25509 - 25382
Alignment:
| Q |
82 |
ttttagtaaatcaaacaatagaattgaaaaggtt-gatcatgcatgtctcaatttagattgcattgtgaatgtctcacatttacaactatcctaggatca |
180 |
Q |
| |
|
||||||||||||||||| | | ||||||||| || ||||||||||| ||||||||||||||||||||| | | ||||||||||||||||||||||||||| |
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|
| T |
25509 |
ttttagtaaatcaaacatttggattgaaaagttttgatcatgcatgactcaatttagattgcattgtgcaagactcacatttacaactatcctaggatca |
25410 |
T |
|
| Q |
181 |
aaacattaatgtgaaataaattctaaat |
208 |
Q |
| |
|
||||| || |||||| |||| |||||| |
|
|
| T |
25409 |
taacatgaaagtgaaacaaatcctaaat |
25382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0402 (Bit Score: 78; Significance: 6e-36; HSPs: 2)
Name: scaffold0402
Description:
Target: scaffold0402; HSP #1
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 32 - 222
Target Start/End: Original strand, 9276 - 9469
Alignment:
| Q |
32 |
aaaaggttggctcaattttagaacaaatgcagaaagg-attttcattaggattttagtaaatcaaacaatagaattgaaaaggttgatcatgcatgtctc |
130 |
Q |
| |
|
|||||| | |||||| ||||||| |||||| ||||| ||| ||| ||| |||||| |||||||||||| | ||||||||| ||||||||||||| ||| |
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|
| T |
9276 |
aaaagggttgctcaaatttagaatgaatgcaaaaagggattctcacaaggtttttagcaaatcaaacaattggattgaaaagcttgatcatgcatgactc |
9375 |
T |
|
| Q |
131 |
aatttagattgc-attgtgaatgtctcacatttacaactatcctaggatcaaaacattaatgtgaaataaattctaaatg-aaatatcatttca |
222 |
Q |
| |
|
|||||||||||| |||||| | | |||| |||||||||||||||||||||||||||| ||||||||| ||| ||||||| ||||||||||||| |
|
|
| T |
9376 |
aatttagattgcaattgtgcaagactcatatttacaactatcctaggatcaaaacatgaatgtgaaaccaatcctaaatgcaaatatcatttca |
9469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0402; HSP #2
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 273 - 476
Target Start/End: Original strand, 9542 - 9740
Alignment:
| Q |
273 |
taaaaagtgaaatttacactcgtatatgaagtgggactcacatccgacatcgtgttaacatcataatcaagtcagacatacatcgaagcatgctcatcgg |
372 |
Q |
| |
|
||||||||||||||||| ||| ||| ||||||||||||||||||| ||| ||| ||||||| | ||||||| || ||||||| || ||| |||| | |
|
|
| T |
9542 |
taaaaagtgaaatttacgctcatatgtgaagtgggactcacatccaacaatgtgctaacatcctgatcaagttaggtatacatccaaacatattcatttg |
9641 |
T |
|
| Q |
373 |
aaagcatcaagtatagatcacaaaagtcttctaagggttgtaatgaggcaggctatgttacaagaaattgtcatttacttgagaaatgtttcaaaaaggc |
472 |
Q |
| |
|
||||||||||| ||||||||| || ||||| |||| ||||||||||||| || ||||||||||||||||||||| || ||||| |||||||||||| |
|
|
| T |
9642 |
aaagcatcaagcatagatcactaaggtctt-taagagttgtaatgaggccgg----gttacaagaaattgtcatttatctgggaaatatttcaaaaaggc |
9736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 234 - 392
Target Start/End: Original strand, 7730412 - 7730570
Alignment:
| Q |
234 |
tggttaaatttgaatcacgcccaacacaatcctcacaaataaaaagtgaaatttacactcgtatatgaagtgggactcacatccgacatcgtgttaacat |
333 |
Q |
| |
|
||||||| |||||||| | | || ||||||||||||| |||||||| |||||||| ||| ||| ||||| |||||||| ||||| || ||| |||||| |
|
|
| T |
7730412 |
tggttaagtttgaatcgcagctaagacaatcctcacaagtaaaaagtaaaatttacgctcatatgtgaagggggactcatatccggcaatgtgctaacat |
7730511 |
T |
|
| Q |
334 |
cataatcaagtcagacatacatcgaagcatgctcatcggaaagcatcaagtatagatca |
392 |
Q |
| |
|
| | ||||||| ||||||||||| || ||| |||| ||||||||||| |||||||| |
|
|
| T |
7730512 |
cctcatcaagttagacatacatccaaacatattcatttgaaagcatcaaacatagatca |
7730570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 155 - 209
Target Start/End: Complemental strand, 9252484 - 9252430
Alignment:
| Q |
155 |
tcacatttacaactatcctaggatcaaaacattaatgtgaaataaattctaaatg |
209 |
Q |
| |
|
|||||||||||| |||||||||||||||| |||||||| ||| |||||||||||| |
|
|
| T |
9252484 |
tcacatttacaattatcctaggatcaaaatattaatgttaaacaaattctaaatg |
9252430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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