View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4195_low_11 (Length: 293)
Name: NF4195_low_11
Description: NF4195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4195_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 15 - 281
Target Start/End: Original strand, 2911595 - 2911863
Alignment:
| Q |
15 |
agaccaaagtgactatttgctcatc--gttaccaaaattttttatatccataatctgccacgtcacaagtattataaaaacaataagctgtatacgtact |
112 |
Q |
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| T |
2911595 |
agaccaaagtgactatttgctcatcatgttaccaaatttttttatatccataatctgccacgtcacaaatattataaaaacaataagctgtatacgtact |
2911694 |
T |
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| Q |
113 |
caatggataatagagtacaaagtggtatacatatacatctacgtgggtgatcatatatcaattaaatccagtagcctccaaatatagtcagtcatataca |
212 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
2911695 |
caatggataatagagtacaaagtggtatgcatatacatctacgtgggtcatcatatatcaattaaatccagtagcctccaaatat----agtcatataca |
2911790 |
T |
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| Q |
213 |
aactctttgatttaattccaatcccaaccaaaaccaaagc----taaatacatcattatacacgtaaagtttg |
281 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |
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| T |
2911791 |
aactctttgatttaattccaatcccaaccaaaaccaaagctaattaaatacatcattatacacgtaaactttg |
2911863 |
T |
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