View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4195_low_15 (Length: 242)
Name: NF4195_low_15
Description: NF4195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4195_low_15 |
 | |
|
| [»] chr4 (4 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 160; Significance: 2e-85; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 83 - 242
Target Start/End: Complemental strand, 42770167 - 42770008
Alignment:
| Q |
83 |
ctctaatggaatattgtatgacttatgataggtgtttggcctgaatcaaagagctttagcgatgaaggagtgggtccagttccaaccagatggcgtggaa |
182 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42770167 |
ctctaatggaatattgtatgacttatgataggtgtttggcctgaatcaaagagctttagcgatgaaggagtgggtccagttccaaccagatggcgtggaa |
42770068 |
T |
|
| Q |
183 |
tttgcgatgttgacatagataatactgataaatttaaatgcaacaggttaatcttgttat |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42770067 |
tttgcgatgttgacatagataatactgataaatttaaatgcaacaggttaatcttgttat |
42770008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 103 - 151
Target Start/End: Original strand, 42733416 - 42733464
Alignment:
| Q |
103 |
acttatgataggtgtttggcctgaatcaaagagctttagcgatgaagga |
151 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| ||||| ||||||||| |
|
|
| T |
42733416 |
acttatgataggtgtttggccagaatcaaagagttttagtgatgaagga |
42733464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 151
Target Start/End: Complemental strand, 42744313 - 42744263
Alignment:
| Q |
101 |
tgacttatgataggtgtttggcctgaatcaaagagctttagcgatgaagga |
151 |
Q |
| |
|
|||||||||| |||||||||||| ||||| ||||| ||||| ||||||||| |
|
|
| T |
42744313 |
tgacttatgacaggtgtttggccagaatctaagagttttagtgatgaagga |
42744263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 151
Target Start/End: Complemental strand, 42753672 - 42753622
Alignment:
| Q |
101 |
tgacttatgataggtgtttggcctgaatcaaagagctttagcgatgaagga |
151 |
Q |
| |
|
|||||||||| |||||||||||| ||||| ||||| ||||| ||||||||| |
|
|
| T |
42753672 |
tgacttatgacaggtgtttggccagaatctaagagttttagtgatgaagga |
42753622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 37110561 - 37110521
Alignment:
| Q |
110 |
ataggtgtttggcctgaatcaaagagctttagcgatgaagg |
150 |
Q |
| |
|
||||| |||||||||||||||||||||||||| |||||||| |
|
|
| T |
37110561 |
ataggcgtttggcctgaatcaaagagctttagtgatgaagg |
37110521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University