View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4195_low_17 (Length: 234)

Name: NF4195_low_17
Description: NF4195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4195_low_17
NF4195_low_17
[»] chr4 (3 HSPs)
chr4 (18-218)||(43431035-43431235)
chr4 (18-218)||(51208603-51208804)
chr4 (163-208)||(42059600-42059645)
[»] chr2 (2 HSPs)
chr2 (18-218)||(6254970-6255170)
chr2 (155-212)||(12331976-12332034)
[»] chr1 (4 HSPs)
chr1 (153-212)||(49359696-49359755)
chr1 (155-212)||(4433984-4434042)
chr1 (155-212)||(25665779-25665837)
chr1 (153-205)||(49361909-49361961)
[»] chr3 (3 HSPs)
chr3 (165-215)||(16370-16420)
chr3 (167-208)||(17131-17172)
chr3 (139-212)||(40934748-40934821)
[»] chr5 (1 HSPs)
chr5 (166-211)||(17111702-17111747)
[»] chr8 (2 HSPs)
chr8 (165-213)||(37812062-37812110)
chr8 (151-208)||(37811230-37811287)
[»] scaffold0159 (1 HSPs)
scaffold0159 (165-212)||(28211-28258)


Alignment Details
Target: chr4 (Bit Score: 173; Significance: 4e-93; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 18 - 218
Target Start/End: Original strand, 43431035 - 43431235
Alignment:
Q  18 gagatatcaccggaatgaccgttttcggagtagaacaatgactaaagaaagaatggtgctgaaacggtgaagaaaggagaactttcagaaatcgcgtgag 117  Q
    ||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  43431035 gagatatcgtcggaatgaccgtttttggagtagaacaatgactaaagaaagaatggtgctgaaacgatgaagaaaggagaactttcagaaatcgcgtgag 43431134  T
Q  118 gtgaaagaaagcaacgcgcgtgaaattgatgaaaagagagtcacgtgactcattaaacctctcttttaatcacaaccatctaactaatccaatggtcaca 217  Q
    |||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43431135 gtgagagaaatcaacgcgcgtgaaattgatgaaaagagagtcatgtgactcattaaacctctcttttaatcacaaccatctaactaatccaatggtcaca 43431234  T
Q  218 g 218  Q
    |    
T  43431235 g 43431235  T

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Target: chr4; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 18 - 218
Target Start/End: Original strand, 51208603 - 51208804
Alignment:
Q  18 gagatatcaccggaatgaccgttttcggagtagaacaatgactaaagaaagaatggtgctgaaacggtgaagaaaggagaactttcagaaatcgcgtgag 117  Q
    |||||||| ||  |||||| ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||    
T  51208603 gagatatcgccaaaatgactgtttttggagtagaacaatgactaaagaaagaatggtgctgaaacgatgaagaaaggagaattttcagaaatcgcgtgag 51208702  T
Q  118 gtgaaagaaagcaacgcgc-gtgaaattgatgaaaagagagtcacgtgactcattaaacctctcttttaatcacaaccatctaactaatccaatggtcac 216  Q
    |||| |||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  51208703 gtgagagaaagcaacgcgcggtgaaattgatgaaaagagagtcatgtgactcattaaacctctcttttaattacaaccatctaactaatccaatgatcac 51208802  T
Q  217 ag 218  Q
    ||    
T  51208803 ag 51208804  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 208
Target Start/End: Complemental strand, 42059645 - 42059600
Alignment:
Q  163 tgactcattaaacctctcttttaatcacaaccatctaactaatcca 208  Q
    ||||||||||||| |||||||||||||||  ||||||| |||||||    
T  42059645 tgactcattaaacttctcttttaatcacattcatctaattaatcca 42059600  T

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Target: chr2 (Bit Score: 173; Significance: 4e-93; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 18 - 218
Target Start/End: Complemental strand, 6255170 - 6254970
Alignment:
Q  18 gagatatcaccggaatgaccgttttcggagtagaacaatgactaaagaaagaatggtgctgaaacggtgaagaaaggagaactttcagaaatcgcgtgag 117  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||    
T  6255170 gagatatcgccggaatgaccgttttcggagtagaacaatgactaaagaaagaatggtgctgaaacgatgaagaaaggagaattttcagaaatcgcgtgag 6255071  T
Q  118 gtgaaagaaagcaacgcgcgtgaaattgatgaaaagagagtcacgtgactcattaaacctctcttttaatcacaaccatctaactaatccaatggtcaca 217  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |||||| |||||||||||    
T  6255070 gtgaaagaaagcaacgcgcgtgaaattgatgaaaagagagtcatgtgactcattaaacctctattttaatcacaaccatcttactaattcaatggtcaca 6254971  T
Q  218 g 218  Q
    |    
T  6254970 g 6254970  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 155 - 212
Target Start/End: Original strand, 12331976 - 12332034
Alignment:
Q  155 gagtcacgtgactcattaaacc-tctcttttaatcacaaccatctaactaatccaatgg 212  Q
    ||||||||||| |||||||||| | ||||||||||||| |||||||| |||||||||||    
T  12331976 gagtcacgtgagtcattaaaccatttcttttaatcacagccatctaattaatccaatgg 12332034  T

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Target: chr1 (Bit Score: 52; Significance: 6e-21; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 153 - 212
Target Start/End: Complemental strand, 49359755 - 49359696
Alignment:
Q  153 gagagtcacgtgactcattaaacctctcttttaatcacaaccatctaactaatccaatgg 212  Q
    |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||    
T  49359755 gagagtcacgtgactcattaaacctcccttttaatcacagccatctaactaatccaatgg 49359696  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 155 - 212
Target Start/End: Complemental strand, 4434042 - 4433984
Alignment:
Q  155 gagtcacgtgactcattaaacc-tctcttttaatcacaaccatctaactaatccaatgg 212  Q
    ||||||||||| |||||||||| | ||||||||||||| |||||||| |||||||||||    
T  4434042 gagtcacgtgagtcattaaaccatttcttttaatcacagccatctaattaatccaatgg 4433984  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 155 - 212
Target Start/End: Complemental strand, 25665837 - 25665779
Alignment:
Q  155 gagtcacgtgactcattaaacc-tctcttttaatcacaaccatctaactaatccaatgg 212  Q
    ||||||||||| |||||||||| | ||||||||||||| |||||||| |||||||||||    
T  25665837 gagtcacgtgagtcattaaaccatttcttttaatcacagccatctaattaatccaatgg 25665779  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 205
Target Start/End: Original strand, 49361909 - 49361961
Alignment:
Q  153 gagagtcacgtgactcattaaacctctcttttaatcacaaccatctaactaat 205  Q
    ||||||||| ||| ||||| ||| || |||||||||||| |||||||||||||    
T  49361909 gagagtcacctgattcattgaacttcccttttaatcacagccatctaactaat 49361961  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 165 - 215
Target Start/End: Complemental strand, 16420 - 16370
Alignment:
Q  165 actcattaaacctctcttttaatcacaaccatctaactaatccaatggtca 215  Q
    ||||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  16420 actcattaaacttctcttttaatcacagccatctaactaatccaatggtca 16370  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 167 - 208
Target Start/End: Original strand, 17131 - 17172
Alignment:
Q  167 tcattaaacctctcttttaatcacaaccatctaactaatcca 208  Q
    ||||||||| ||||||||||||||| ||||||||||||||||    
T  17131 tcattaaacttctcttttaatcacagccatctaactaatcca 17172  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 212
Target Start/End: Original strand, 40934748 - 40934821
Alignment:
Q  139 gaaattgatgaaaagagagtcacgtgactcattaaacctctcttttaatcacaaccatctaactaatccaatgg 212  Q
    |||||||  ||||||||||||||||||||||||||||  |  ||||||||||| |||| || | ||||||||||    
T  40934748 gaaattggagaaaagagagtcacgtgactcattaaactgcatttttaatcacagccatgtatccaatccaatgg 40934821  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 211
Target Start/End: Original strand, 17111702 - 17111747
Alignment:
Q  166 ctcattaaacctctcttttaatcacaaccatctaactaatccaatg 211  Q
    |||||||||| |||||||||||||||| ||||||||||||||||||    
T  17111702 ctcattaaacttctcttttaatcacaatcatctaactaatccaatg 17111747  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 165 - 213
Target Start/End: Original strand, 37812062 - 37812110
Alignment:
Q  165 actcattaaacctctcttttaatcacaaccatctaactaatccaatggt 213  Q
    ||||||||||| ||||||||||||||| |||||||||||||||| ||||    
T  37812062 actcattaaacttctcttttaatcacagccatctaactaatccattggt 37812110  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 208
Target Start/End: Complemental strand, 37811287 - 37811230
Alignment:
Q  151 aagagagtcacgtgactcattaaacctctcttttaatcacaaccatctaactaatcca 208  Q
    ||||||||||  ||||||||||||| ||||||||||||| |  ||||||| |||||||    
T  37811287 aagagagtcatatgactcattaaacttctcttttaatcatagacatctaattaatcca 37811230  T

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Target: scaffold0159 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 165 - 212
Target Start/End: Complemental strand, 28258 - 28211
Alignment:
Q  165 actcattaaacctctcttttaatcacaaccatctaactaatccaatgg 212  Q
    ||||||||||| ||||||||||||||| |||||||||||||| |||||    
T  28258 actcattaaacatctcttttaatcacagccatctaactaatctaatgg 28211  T

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