View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4195_low_18 (Length: 233)
Name: NF4195_low_18
Description: NF4195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4195_low_18 |
 | |
|
| [»] scaffold0019 (2 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 3414432 - 3414215
Alignment:
| Q |
1 |
tcaaaaccattatggatctgtgttatttgctgaaatgaaatgtgaggatattgaagttcccccattagtaatggatgctgcttgctgtgatggtgcttgc |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3414432 |
tcaaaactattatggatctgtgttatttgctgaaatgaaatgtgaggatattgaagttcccccattagtaatggatgctgcttgctgtgatggtgcttgc |
3414333 |
T |
|
| Q |
101 |
tgtgaggatattgaaatgaaatgttatgggactacaatagtgcttgctgcgagttgaacaacaacaactcaagaacctaatcatagatcatggatgctga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3414332 |
tgtgaggatattgaaatgaaatgttatgggactacgatagtgcttgctgcgagttgaacaacaacaactcaagaacctaatcatagatcatggatgctga |
3414233 |
T |
|
| Q |
201 |
aacagtagttaggtgtgt |
218 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
3414232 |
aacagtagttaggtgtgt |
3414215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 110; Significance: 1e-55; HSPs: 2)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 101 - 218
Target Start/End: Original strand, 62503 - 62620
Alignment:
| Q |
101 |
tgtgaggatattgaaatgaaatgttatgggactacaatagtgcttgctgcgagttgaacaacaacaactcaagaacctaatcatagatcatggatgctga |
200 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
62503 |
tgtgagaatattgaaatgaaatgttatgggactacgatagtgcttgctgcgagttgaacaacaacaactcaagaacctaatcatagatcatggatgctga |
62602 |
T |
|
| Q |
201 |
aacagtagttaggtgtgt |
218 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
62603 |
aacagtagttaggtgtgt |
62620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 62466 - 62517
Alignment:
| Q |
4 |
aaaccattatggatctgtgttatttgctgaaatgaaatgtgaggatattgaa |
55 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||| |||||||| |
|
|
| T |
62466 |
aaaccattatggatctatgttatttgctgaaatgaaatgtgagaatattgaa |
62517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University