View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4195_low_5 (Length: 446)
Name: NF4195_low_5
Description: NF4195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4195_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 435
Target Start/End: Original strand, 41674817 - 41675236
Alignment:
| Q |
1 |
tccatcatccccgtgcatcttcagctccaactcgacctcatgctcatagtaccaccaattcctcacgattcttacctcaattgggtttcccttctaagct |
100 |
Q |
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| T |
41674817 |
tccatcatccccgtgcatcttcagctccaactcgacctcatcctcatagtaccaccaattcctcacgattcttacctcaattcggtttcccttctaagct |
41674916 |
T |
|
| Q |
101 |
caaaaaacctatcaaaaatgctaccttacgctctatttccggtgcttcacaagacggacctatttccttcgaagacgaaacccaacagctccgtcatcaa |
200 |
Q |
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|||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41674917 |
caaaaa------------tgctaccttacgctctatttccgtttcttcacaagacggacctatttccttcgaagacgaaacccaacagctccgtcatcaa |
41675004 |
T |
|
| Q |
201 |
gatgaagaagaagatgagggacgtttattatctagagagattgacgattttggttctcttgttgcctttcgcttgactcctcacaatgcctctgcctctg |
300 |
Q |
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||| |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |
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| T |
41675005 |
gatcaaga---agatgagggacgtttattatccagagagattgacgattttggttctcttgtttcctttcgcttgactcctcactctgcctctgcctctg |
41675101 |
T |
|
| Q |
301 |
cctctggtatctattcctttccttttcattccctattttctaaattcttactatcttcgtatgcattattaccatcttctacttcaaattcttttgctag |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
41675102 |
cctctggtatctattcctttccttttcattccctattttctaaattcttactatcttcatatgcattattaccatcttctacttcaaattcttttgctag |
41675201 |
T |
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| Q |
401 |
gcttattcaattcccctattcaatagccaagtttt |
435 |
Q |
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||||||||||||||||||||||||| ||||||||| |
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| T |
41675202 |
gcttattcaattcccctattcaatatccaagtttt |
41675236 |
T |
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