View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4195_low_6 (Length: 444)
Name: NF4195_low_6
Description: NF4195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4195_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 12 - 427
Target Start/End: Complemental strand, 39001322 - 39000918
Alignment:
| Q |
12 |
atgaagtacttaataatctaaaaggccataagcatggtttagaaagaataagaaaagggaataaaattgaataaataacatatgtttaatatacgaactt |
111 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||||| |
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| T |
39001322 |
atgaagtacttt-taatctaaaaggccataagcatggtttagaaagaataagaaaagggcataaa----------taacatatgtttaatatatgaactt |
39001234 |
T |
|
| Q |
112 |
tatgactgcattttgataaataaaaacacacatttatagagcttgcttacgcttttgaagctgcataaagtgtgacaagaggatatgaaggaatcacaac |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39001233 |
tatgactgcattttgataaataaaaacacacatttatagagcttgcttacgcttttgaagctgcataaagtgtgacaagaggatatgaaggaatcacaac |
39001134 |
T |
|
| Q |
212 |
agtggaaccagaaccaatgttaataatagctccttttttgttgttaatcatactaggaagcacagcttttgtgatccaagttgttccttcaacattcact |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |
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| T |
39001133 |
agtggaaccagaaccaatgttaataatagctccttttttgttcttaatcatactaggaagcacagctttagtaatccaagttgttccttcaacattcact |
39001034 |
T |
|
| Q |
312 |
ttgataatagtatccatcaaatccaaatcaacctcatgaaaaaatctagcataaggataagccacaccagcaccattaactaaaattccaacatctaaac |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39001033 |
ttgataatagtatccatcaaatccaaatcaacctcatgaaaaaatctagcataaggataagccacaccagcaccattaactaaaattccaacatctaaac |
39000934 |
T |
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| Q |
412 |
catctatagcttcttc |
427 |
Q |
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| T |
39000933 |
catctatagcttcttc |
39000918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 118 - 428
Target Start/End: Complemental strand, 38996596 - 38996286
Alignment:
| Q |
118 |
tgcattttgataaataaaaaca-cacatttatagagcttgcttacgcttttgaagctgcataaagtgtgacaagaggatatgaaggaatcacaacagtgg |
216 |
Q |
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|||||||||||||||||||| | || |||||||||| | ||||||||||||| |||||||||| ||||||||||||| | ||||||| |||||| ||| |
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| T |
38996596 |
tgcattttgataaataaaaagaacaaatttatagagata-cttacgcttttgatgctgcataaattgtgacaagaggaaaagaaggaagtacaacactgg |
38996498 |
T |
|
| Q |
217 |
aaccagaaccaatgttaataatagctccttttttgttgttaatcatactaggaagcacagcttttgtgatccaagttgttccttcaacattcactttgat |
316 |
Q |
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|||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
38996497 |
aaccagaaccaatgttaataatagctccttttctcttcttaatcatactaggaagcacagcttttgtaatccaagttgttccttcaacattcactttgat |
38996398 |
T |
|
| Q |
317 |
aatagtatccatcaaatccaaatcaacctcatgaaaaaatctagcataaggataagccacaccagcaccattaactaaaattccaacatctaaaccatct |
416 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||| | |
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| T |
38996397 |
aatagcatccatcaaatccaaatcaacctcatgaaaaaatctagcataagggtaagccacaccagcactattaactaaaattcccacatctaaaccatat |
38996298 |
T |
|
| Q |
417 |
atagcttcttct |
428 |
Q |
| |
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|| ||||||||| |
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|
| T |
38996297 |
attgcttcttct |
38996286 |
T |
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