View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4195_low_7 (Length: 440)
Name: NF4195_low_7
Description: NF4195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4195_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 253; Significance: 1e-140; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 51 - 436
Target Start/End: Complemental strand, 33840934 - 33840549
Alignment:
| Q |
51 |
ttgttattcatgttcgaactttagattttacatttctctacacttcaagtgtgtgagttcaattactagtatatttgataaaattttacgtacggcttta |
150 |
Q |
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| T |
33840934 |
ttgttattcatgttcgaacttaagattttacatttctctacacttcaagtgtgtgagttcaattactagtctatttgataaaattttacg----gcttta |
33840839 |
T |
|
| Q |
151 |
annnnnnnnnaaaatgaatgtggatgccataaatgaaattgatctcacgcattggagcacaattgaatta----ttgatgtatagagaaaaataaatttt |
246 |
Q |
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| T |
33840838 |
attttttttttaaatgaatgtggatgccataaatgaaattgatctcacgcattagagcacaattgaattaattattgatgtatagagaaaaataaatttt |
33840739 |
T |
|
| Q |
247 |
tgagattgttaatgtgtcgacattattgtttaagacacatnnnnnnnnngtttatgcttcaaaatgaaatataaacaaaaatgagaatagtaacnnnnnn |
346 |
Q |
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| T |
33840738 |
tgagattgttaatgtgtcgacattattatttaagacacacataaaaaaagtttatgcttcaaaatgaaatataaacaaaaatgagaatagtaactttttt |
33840639 |
T |
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| Q |
347 |
nacttatatttcattttgaattgagtaattcattattaatagaagtagcttagatcccgatgtttactactcactcacttcatctcactc |
436 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
33840638 |
tacttatatttcattttgaattgagtaattcattattaatagaagtagcttagatcccgatgtttactactcactcactccatctcactc |
33840549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 33841029 - 33840979
Alignment:
| Q |
1 |
aaatatattaaatttggccctatgtttgtaacttaattgataaacatactt |
51 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33841029 |
aaatatattaaatttggccctatgtttgtaacttaattgataaacatactt |
33840979 |
T |
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