View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4195_low_8 (Length: 410)
Name: NF4195_low_8
Description: NF4195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4195_low_8 |
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| [»] scaffold0022 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 11 - 394
Target Start/End: Original strand, 33841006 - 33841388
Alignment:
| Q |
11 |
catagggccaaatttaatatattttacatagttgttgataatgcttaccattgcttcatctttcatactaactctttttaatagaccttgatgaatcatt |
110 |
Q |
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| T |
33841006 |
catagggccaaatttaatatattt-acatagttgttgataatgcttaccattgcttcatctttcatactaactctttttaatagaccttgatgaatcatt |
33841104 |
T |
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| Q |
111 |
cagacaagcttatcatcatctacattaagtcttgttaattcgaaggctggattttgaggttccatttgcctttccctttccctttctcgtgatcttccct |
210 |
Q |
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| T |
33841105 |
cagacaagcttatcatcttctacattaagtcttgttaattcgaaggctggattttgaggttccatttgcctttccctttccctttctcgtgatcttccct |
33841204 |
T |
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| Q |
211 |
attgtacaaagctccttaattactacttctaaaagagttgataatttcttttcatgatcttctccgagaaaatatgaatcaatggttagtcgaaatatgt |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
33841205 |
attgtacaaagctccttaattactacttctaaaagagttgataatttcttttcatgatcttctccaagaaaatatgaatcaatggttagtcgaaatatgt |
33841304 |
T |
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| Q |
311 |
tgtcaataaatcttgttttttaagattttggaaataaagaaatcaacgatgtgtagaacggagaagaatgactagtggattttg |
394 |
Q |
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| T |
33841305 |
tgtcaataaatcttgttttttaagattttggaaataaagaaatcaacaatgtgtagaacggagaagaatgactagtggattttg |
33841388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 82 - 227
Target Start/End: Original strand, 39636028 - 39636174
Alignment:
| Q |
82 |
ctctttttaatagaccttgatgaatcattcagacaagcttatcatcatctacattaagtcttgttaattcgaaggctggattttgaggttccatt-tgcc |
180 |
Q |
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| T |
39636028 |
ctcttttcaatagaccttgatgaatcattcgaacaagcttatcatcatctacaataagtgctgttaattcagttcctgaatcttgagattccattatccc |
39636127 |
T |
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| Q |
181 |
tttccctttccctttctcgtgatcttccctattgtacaaagctcctt |
227 |
Q |
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| T |
39636128 |
tttccctttccctttcccttgatcttccattttgtacaaagttcctt |
39636174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 63 - 175
Target Start/End: Complemental strand, 160242 - 160130
Alignment:
| Q |
63 |
gcttcatctttcatactaactctttttaatagaccttgatgaatcattcagacaagcttatcatcatctacattaagtcttgttaattcgaaggctggat |
162 |
Q |
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| T |
160242 |
gcttcatttttcacaccagctcttttcaatagaccttgatgactaattcgaacaagcttaatatcatctacaataagtgttgttaattcggatcctgaat |
160143 |
T |
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| Q |
163 |
tttgaggttccat |
175 |
Q |
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| T |
160142 |
tttgaggttccat |
160130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 63 - 194
Target Start/End: Original strand, 23348607 - 23348739
Alignment:
| Q |
63 |
gcttcatctttcatactaactctttttaatagaccttgatgaatcattcagacaagcttatcatcatctacattaagtcttgttaattcgaaggctggat |
162 |
Q |
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| T |
23348607 |
gcttcatttttcacaccagctcttttcaatagaccttgatgaatcatttgaacaagcttaacataatcttcaataagttatgttaattcggatcctgaat |
23348706 |
T |
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| Q |
163 |
tttgaggttccatttgc-ctttccctttccctt |
194 |
Q |
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| T |
23348707 |
tttgaggttccataagctctttccctttccctt |
23348739 |
T |
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