View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4196_high_4 (Length: 271)
Name: NF4196_high_4
Description: NF4196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4196_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 4 - 249
Target Start/End: Complemental strand, 17118781 - 17118537
Alignment:
| Q |
4 |
atgtcgaacaaaatagggaattgacgcaacactatgttttgagcatgaaccttgattagatggggaggtactaaaggaacattttagtatattatttagt |
103 |
Q |
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| T |
17118781 |
atgttgaagaaaatagggaattgacgcaacactatgttttcagtatgaaccttagttaggtggggaggtattaaaggaatattttagtatattatttagt |
17118682 |
T |
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| Q |
104 |
cttccaattgataaaaaatgtttatgtaaaagatatggtgatttcgagtggtttggatgaagggggataaaattggagaagaaatttgtttgcttaagag |
203 |
Q |
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| T |
17118681 |
cttccaattgatcaaaa-tgtttatgtaaaagatatggtgatttcaagtggtttggataaagggggatgaaattggagaagaaatttgtttgcattagag |
17118583 |
T |
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| Q |
204 |
taagggttagctaaggggtgtaggactctattagataactttttgg |
249 |
Q |
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| T |
17118582 |
gaagagttagctaaggggtgtaggactctactagataactttttgg |
17118537 |
T |
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Back To:
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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 111 - 168
Target Start/End: Complemental strand, 33519798 - 33519741
Alignment:
| Q |
111 |
ttgataaaaaatgtttatgtaaaagatatggtgatttcgagtggtttggatgaagggg |
168 |
Q |
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| T |
33519798 |
ttgatgaaaaatgtttgtgtaaaggatatggtgacttcaagtggtttggaggaagggg |
33519741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 160
Target Start/End: Original strand, 6016997 - 6017069
Alignment:
| Q |
88 |
tagtatattatttagtcttccaattgataaaaaatgtttatgtaaaagatatggtgatttcgagtggtttgga |
160 |
Q |
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| T |
6016997 |
tagtatattatttaatcttttagttgataaaaaaggtttcaatgaaaaatatggtgatttcgagtggtttgga |
6017069 |
T |
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