View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4196_high_7 (Length: 250)
Name: NF4196_high_7
Description: NF4196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4196_high_7 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 124; Significance: 7e-64; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 24 - 250
Target Start/End: Original strand, 47067977 - 47068211
Alignment:
| Q |
24 |
agggtctctcacaaggctttgtgtcatataagtccacatgtttggtatagggtgccttgtaagagtgaannnnnnnn--------ggattatcttgctga |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
47067977 |
agggtctctcacaaggctttgtgtcatataagtccacatgtttggtatagggtgccttgtaagagtgaatttttatttttattttggattatcttgctga |
47068076 |
T |
|
| Q |
116 |
ctcagaaatggcatgtccgtcacattaaccacnnnnnnnnnnnnnnnnnnaggaaagtcacattaactacttaactttggcttttcaaataaattacttg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47068077 |
ctcagaaatggcatgtccgtcacattaaccacttttttttttttttttttaggaaagtcgcattaactacttaactttggcttttcaaataaattacttg |
47068176 |
T |
|
| Q |
216 |
actgagtttgttgaaaacttgtgttacttcttcat |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
47068177 |
actgagtttgttgaaaacttgtgttacttcttcat |
47068211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 92
Target Start/End: Original strand, 47068395 - 47068459
Alignment:
| Q |
28 |
tctctcacaaggctttgtgtcatataagtccacatgtttggtatagggtgccttgtaagagtgaa |
92 |
Q |
| |
|
||||||||| || ||| | ||||| |||||||| ||||||| |||||||||||| |||||||||| |
|
|
| T |
47068395 |
tctctcacagggttttatttcatacaagtccacctgtttggaatagggtgccttataagagtgaa |
47068459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University