View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4196_low_1 (Length: 457)

Name: NF4196_low_1
Description: NF4196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4196_low_1
NF4196_low_1
[»] chr7 (16 HSPs)
chr7 (263-441)||(46658141-46658319)
chr7 (10-190)||(46657832-46658009)
chr7 (14-73)||(10464114-10464173)
chr7 (17-72)||(24151581-24151636)
chr7 (14-73)||(37231562-37231621)
chr7 (14-72)||(31497709-31497767)
chr7 (17-59)||(44389299-44389341)
chr7 (19-73)||(48531530-48531584)
chr7 (17-73)||(35500746-35500802)
chr7 (132-180)||(43444638-43444686)
chr7 (17-72)||(34478008-34478063)
chr7 (132-178)||(2323307-2323353)
chr7 (19-72)||(31466358-31466411)
chr7 (132-185)||(34992339-34992392)
chr7 (137-178)||(36990060-36990101)
chr7 (14-50)||(33613415-33613451)
[»] chr3 (25 HSPs)
chr3 (17-72)||(3547420-3547475)
chr3 (14-73)||(32951135-32951194)
chr3 (19-75)||(29728095-29728151)
chr3 (21-72)||(28690707-28690758)
chr3 (17-75)||(36665224-36665282)
chr3 (132-185)||(30580136-30580189)
chr3 (19-72)||(53066578-53066631)
chr3 (21-73)||(10435329-10435381)
chr3 (14-58)||(15503226-15503270)
chr3 (132-176)||(52431213-52431257)
chr3 (132-176)||(53871045-53871089)
chr3 (14-73)||(4238493-4238552)
chr3 (17-68)||(35717859-35717910)
chr3 (132-178)||(23868989-23869035)
chr3 (132-178)||(28884494-28884540)
chr3 (19-73)||(45167507-45167561)
chr3 (22-72)||(46483759-46483809)
chr3 (132-178)||(47683804-47683850)
chr3 (132-185)||(45205291-45205344)
chr3 (22-75)||(47638266-47638319)
chr3 (14-63)||(48143966-48144015)
chr3 (19-72)||(49058064-49058117)
chr3 (22-75)||(54673989-54674042)
chr3 (19-75)||(38833871-38833927)
chr3 (132-180)||(50146491-50146539)
[»] chr2 (21 HSPs)
chr2 (10-73)||(13399104-13399167)
chr2 (137-178)||(6842568-6842609)
chr2 (17-74)||(43925072-43925129)
chr2 (19-75)||(7442888-7442944)
chr2 (17-72)||(42020203-42020258)
chr2 (19-73)||(9877082-9877136)
chr2 (17-74)||(332480-332537)
chr2 (132-185)||(1095840-1095893)
chr2 (132-185)||(9834085-9834138)
chr2 (132-185)||(17264079-17264132)
chr2 (19-72)||(32775903-32775956)
chr2 (132-181)||(44105110-44105159)
chr2 (19-51)||(4083415-4083447)
chr2 (19-75)||(38963727-38963783)
chr2 (19-75)||(39418017-39418073)
chr2 (132-174)||(694283-694325)
chr2 (132-178)||(13538261-13538307)
chr2 (22-72)||(24282960-24283010)
chr2 (151-183)||(1298227-1298259)
chr2 (132-176)||(8482245-8482289)
chr2 (14-74)||(14372280-14372340)
[»] chr8 (23 HSPs)
chr8 (17-73)||(10658183-10658239)
chr8 (14-73)||(18809479-18809538)
chr8 (14-73)||(31127804-31127863)
chr8 (14-72)||(3383611-3383669)
chr8 (14-72)||(14522582-14522640)
chr8 (17-59)||(20167590-20167632)
chr8 (132-185)||(40517272-40517325)
chr8 (138-179)||(41935001-41935042)
chr8 (17-72)||(12893734-12893789)
chr8 (132-178)||(7010688-7010734)
chr8 (132-178)||(26000552-26000598)
chr8 (132-178)||(37392139-37392185)
chr8 (132-166)||(43420926-43420960)
chr8 (132-178)||(44103779-44103825)
chr8 (17-63)||(44123876-44123922)
chr8 (132-185)||(157070-157123)
chr8 (19-72)||(6471053-6471106)
chr8 (19-72)||(30380738-30380791)
chr8 (132-173)||(42689844-42689885)
chr8 (19-75)||(8350877-8350933)
chr8 (132-176)||(16011930-16011974)
chr8 (14-74)||(29791145-29791205)
chr8 (14-74)||(43066329-43066389)
[»] chr4 (30 HSPs)
chr4 (14-58)||(51736968-51737012)
chr4 (19-74)||(18359971-18360026)
chr4 (14-73)||(25644562-25644621)
chr4 (19-74)||(36602902-36602957)
chr4 (14-73)||(45198339-45198398)
chr4 (132-178)||(36413337-36413383)
chr4 (19-72)||(19652256-19652309)
chr4 (19-72)||(23603647-23603700)
chr4 (132-185)||(28480542-28480595)
chr4 (132-185)||(28481416-28481469)
chr4 (132-185)||(28482291-28482344)
chr4 (22-73)||(4209570-4209621)
chr4 (14-73)||(6922939-6922998)
chr4 (19-74)||(39260130-39260185)
chr4 (132-178)||(4511828-4511874)
chr4 (132-178)||(26718383-26718429)
chr4 (132-178)||(26731011-26731057)
chr4 (17-63)||(50035742-50035788)
chr4 (19-73)||(55190565-55190619)
chr4 (13-63)||(55997313-55997363)
chr4 (14-75)||(3442341-3442402)
chr4 (19-72)||(7738819-7738872)
chr4 (152-185)||(14443233-14443266)
chr4 (132-185)||(27384190-27384243)
chr4 (19-63)||(5123166-5123210)
chr4 (17-69)||(19525717-19525769)
chr4 (19-63)||(19633858-19633902)
chr4 (14-74)||(28166477-28166537)
chr4 (132-176)||(32365680-32365724)
chr4 (17-57)||(50033226-50033266)
[»] chr6 (13 HSPs)
chr6 (10-73)||(13206952-13207015)
chr6 (132-176)||(16352173-16352217)
chr6 (14-73)||(25163367-25163426)
chr6 (19-73)||(16696015-16696069)
chr6 (132-176)||(29467368-29467412)
chr6 (132-179)||(32149503-32149550)
chr6 (17-75)||(8796255-8796313)
chr6 (132-185)||(2163705-2163758)
chr6 (132-185)||(2175338-2175391)
chr6 (17-74)||(19068769-19068826)
chr6 (19-72)||(30237375-30237428)
chr6 (132-184)||(31413539-31413591)
chr6 (132-184)||(31417312-31417364)
[»] chr5 (24 HSPs)
chr5 (14-73)||(4299832-4299891)
chr5 (14-73)||(22613708-22613767)
chr5 (132-185)||(34080305-34080358)
chr5 (19-72)||(37843575-37843628)
chr5 (14-73)||(970341-970400)
chr5 (14-73)||(16048288-16048347)
chr5 (19-72)||(14475230-14475283)
chr5 (14-61)||(39405967-39406014)
chr5 (14-73)||(43067424-43067483)
chr5 (132-178)||(4434485-4434531)
chr5 (132-178)||(13734371-13734417)
chr5 (132-178)||(14206403-14206449)
chr5 (132-178)||(30334777-30334823)
chr5 (19-69)||(39036618-39036668)
chr5 (17-62)||(2864160-2864205)
chr5 (19-76)||(5212918-5212975)
chr5 (152-185)||(15479503-15479536)
chr5 (133-166)||(19428434-19428467)
chr5 (19-72)||(35290494-35290547)
chr5 (132-185)||(42509620-42509673)
chr5 (137-185)||(28597187-28597235)
chr5 (137-185)||(31284398-31284446)
chr5 (14-74)||(35447995-35448055)
chr5 (14-74)||(42148510-42148570)
[»] chr1 (27 HSPs)
chr1 (14-73)||(3898570-3898629)
chr1 (14-73)||(16265236-16265295)
chr1 (14-73)||(16266365-16266424)
chr1 (14-73)||(26441837-26441896)
chr1 (14-73)||(43680273-43680332)
chr1 (19-73)||(4605207-4605261)
chr1 (17-71)||(21034530-21034584)
chr1 (19-75)||(37281300-37281356)
chr1 (21-73)||(50481486-50481538)
chr1 (10-72)||(38737378-38737440)
chr1 (132-178)||(40139129-40139175)
chr1 (132-177)||(43612092-43612137)
chr1 (14-73)||(24982554-24982613)
chr1 (14-73)||(25531981-25532040)
chr1 (132-178)||(1690449-1690495)
chr1 (132-178)||(31433505-31433551)
chr1 (19-73)||(32988348-32988402)
chr1 (132-178)||(37690432-37690478)
chr1 (132-178)||(40596065-40596111)
chr1 (132-178)||(41507205-41507251)
chr1 (132-178)||(48325789-48325835)
chr1 (19-80)||(23569666-23569727)
chr1 (19-72)||(29162051-29162104)
chr1 (132-185)||(29264018-29264071)
chr1 (19-72)||(30529050-30529103)
chr1 (133-166)||(32882949-32882982)
chr1 (132-176)||(39780175-39780219)
[»] scaffold0604 (1 HSPs)
scaffold0604 (20-73)||(1317-1370)
[»] scaffold0007 (1 HSPs)
scaffold0007 (19-74)||(15214-15269)
[»] scaffold0054 (1 HSPs)
scaffold0054 (132-178)||(31611-31657)
[»] scaffold0286 (1 HSPs)
scaffold0286 (132-185)||(18651-18704)


Alignment Details
Target: chr7 (Bit Score: 175; Significance: 5e-94; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 263 - 441
Target Start/End: Original strand, 46658141 - 46658319
Alignment:
Q  263 cgtcaatgacccttgatctcacggtcctactcaacaaagatgacattatcaccgtcacttcattattagaccatcacatcggttattataaatcatagag 362  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46658141 cgtcaatgacccttgatctcacggtcctactcaacaaagatgacattatcaccgtcacttcattattagaccatcacatcggttattataaatcatagag 46658240  T
Q  363 atgtatcccacgagaaattaaagctcctagttagggtactaattttgtggctcccacgataggatcccataatgtcttt 441  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46658241 atttatcccacgagaaattaaagctcctagttagggtactaattttgtggctcccacgataggatcccataatgtcttt 46658319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 10 - 190
Target Start/End: Original strand, 46657832 - 46658009
Alignment:
Q  10 aagaatattaagtcaataatgtatattgtcaaatagatcatccattgagggacgaagggagta-ttacgtaaccgattacacaacatatgtaatcaa-tt 107  Q
    |||||| ||||||||||||||||| |||||||||||||||  | ||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||    
T  46657832 aagaatgttaagtcaataatgtatgttgtcaaatagatcaatctttgagggacgaagggagtatttacgtatccgattacacaacatatgtaatcaattt 46657931  T
Q  108 attaaatagcgttcnnnnnnnnnnaaataatatttatacaaccattttatgacaattttctctctcatacttatattacgttg 190  Q
    ||| |||| | ||           |||| |||||| ||| |||| ||||||| |||||||||||||||||||| |||||||||    
T  46657932 attgaataacatt-----ttttttaaatgatatttgtacgaccactttatgataattttctctctcatacttacattacgttg 46658009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 14 - 73
Target Start/End: Complemental strand, 10464173 - 10464114
Alignment:
Q  14 atattaagtcaataatgtatattgtcaaatagatcatccattgagggacgaagggagtat 73  Q
    |||||||||||||||||||||||||||| ||| ||||  ||||||||||| |||||||||    
T  10464173 atattaagtcaataatgtatattgtcaactaggtcatttattgagggacggagggagtat 10464114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 72
Target Start/End: Complemental strand, 24151636 - 24151581
Alignment:
Q  17 ttaagtcaataatgtatattgtcaaatagatcatccattgagggacgaagggagta 72  Q
    ||||||||||||||||||||||||||||| ||| | ||| ||||||| ||||||||    
T  24151636 ttaagtcaataatgtatattgtcaaataggtcacctattaagggacggagggagta 24151581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 14 - 73
Target Start/End: Complemental strand, 37231621 - 37231562
Alignment:
Q  14 atattaagtcaataatgtatattgtcaaatagatcatccattgagggacgaagggagtat 73  Q
    |||||||||||||||||||||||||||| ||| || |  ||||||||||| |||||||||    
T  37231621 atattaagtcaataatgtatattgtcaactaggtcgtttattgagggacggagggagtat 37231562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 14 - 72
Target Start/End: Complemental strand, 31497767 - 31497709
Alignment:
Q  14 atattaagtcaataatgtatattgtcaaatagatcatccattgagggacgaagggagta 72  Q
    |||||||||||||||||||||||||||||||  ||||  |||||||||| ||| |||||    
T  31497767 atattaagtcaataatgtatattgtcaaataagtcatgtattgagggacaaagagagta 31497709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 59
Target Start/End: Complemental strand, 44389341 - 44389299
Alignment:
Q  17 ttaagtcaataatgtatattgtcaaatagatcatccattgagg 59  Q
    ||||||||||| ||||||||||||||||||||||| |||||||    
T  44389341 ttaagtcaatagtgtatattgtcaaatagatcatctattgagg 44389299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 48531530 - 48531584
Alignment:
Q  19 aagtcaataatgtatattgtcaaatagatcatccattgagggacgaagggagtat 73  Q
    ||||||||||||||||||||||| ||| ||||| ||| ||||||| |||||||||    
T  48531530 aagtcaataatgtatattgtcaactaggtcatctattaagggacggagggagtat 48531584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 35500802 - 35500746
Alignment:
Q  17 ttaagtcaataatgtatattgtcaaatagatcatccattgagggacgaagggagtat 73  Q
    ||||||||||||||||||||||||| ||| |||   ||||||||||| |||||||||    
T  35500802 ttaagtcaataatgtatattgtcaactaggtcaattattgagggacggagggagtat 35500746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 132 - 180
Target Start/End: Original strand, 43444638 - 43444686
Alignment:
Q  132 aaataatatttatacaaccattttatgacaattttctctctcatactta 180  Q
    |||| |||||| |||||||| |||||||||| |||||||||||||||||    
T  43444638 aaatgatatttgtacaaccactttatgacaactttctctctcatactta 43444686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 72
Target Start/End: Complemental strand, 34478063 - 34478008
Alignment:
Q  17 ttaagtcaataatgtatattgtcaaatagatcatccattgagggacgaagggagta 72  Q
    |||| |||||||||||||||||||| ||| ||||  ||||||||||| ||||||||    
T  34478063 ttaaatcaataatgtatattgtcaactaggtcatttattgagggacggagggagta 34478008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 132 - 178
Target Start/End: Original strand, 2323307 - 2323353
Alignment:
Q  132 aaataatatttatacaaccattttatgacaattttctctctcatact 178  Q
    |||| |||||| |||||| |||||||||||| |||||||||||||||    
T  2323307 aaatgatatttgtacaacaattttatgacaactttctctctcatact 2323353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 31466411 - 31466358
Alignment:
Q  19 aagtcaataatgtatattgtcaaatagatcatccattgagggacgaagggagta 72  Q
    ||||||||||||||||||||||| ||| ||||  ||| ||||||| ||||||||    
T  31466411 aagtcaataatgtatattgtcaactaggtcatttattaagggacggagggagta 31466358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 185
Target Start/End: Complemental strand, 34992392 - 34992339
Alignment:
Q  132 aaataatatttatacaaccattttatgacaattttctctctcatacttatatta 185  Q
    |||| |||||| ||||||||||||||||||| | ||||| ||||||||| ||||    
T  34992392 aaatgatatttgtacaaccattttatgacaactctctctttcatacttacatta 34992339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 178
Target Start/End: Original strand, 36990060 - 36990101
Alignment:
Q  137 atatttatacaaccattttatgacaattttctctctcatact 178  Q
    ||||||||||||  |||||||||||| |||||||||||||||    
T  36990060 atatttatacaataattttatgacaactttctctctcatact 36990101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 50
Target Start/End: Original strand, 33613415 - 33613451
Alignment:
Q  14 atattaagtcaataatgtatattgtcaaatagatcat 50  Q
    |||||||||||||||||||||| |||||||| |||||    
T  33613415 atattaagtcaataatgtatatggtcaaataaatcat 33613451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 17 - 72
Target Start/End: Complemental strand, 3547475 - 3547420
Alignment:
Q  17 ttaagtcaataatgtatattgtcaaatagatcatccattgagggacgaagggagta 72  Q
    ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  3547475 ttaagtcaataatgtatattgtcaaataggtcatctattgagggacgaagggagta 3547420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 14 - 73
Target Start/End: Complemental strand, 32951194 - 32951135
Alignment:
Q  14 atattaagtcaataatgtatattgtcaaatagatcatccattgagggacgaagggagtat 73  Q
    |||||||||||||||||||||||||||| ||||||||  ||||||||||| |||||||||    
T  32951194 atattaagtcaataatgtatattgtcaactagatcatttattgagggacggagggagtat 32951135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 29728151 - 29728095
Alignment:
Q  19 aagtcaataatgtatattgtcaaatagatcatccattgagggacgaagggagtatta 75  Q
    ||||||||||||||||||||||| ||||||||  ||| ||||||| |||||||||||    
T  29728151 aagtcaataatgtatattgtcaactagatcatttattaagggacggagggagtatta 29728095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 21 - 72
Target Start/End: Original strand, 28690707 - 28690758
Alignment:
Q  21 gtcaataatgtatattgtcaaatagatcatccattgagggacgaagggagta 72  Q
    ||||||||| ||||||||||||||| ||||| ||||||||||| ||||||||    
T  28690707 gtcaataatatatattgtcaaataggtcatctattgagggacggagggagta 28690758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 36665224 - 36665282
Alignment:
Q  17 ttaagtcaataatgtatattgtcaaatagatcatccattgagggacgaagggagtatta 75  Q
    |||||| |||||||||||||||||||||| ||||| ||| ||||||| |||| ||||||    
T  36665224 ttaagttaataatgtatattgtcaaataggtcatctattaagggacggagggggtatta 36665282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 132 - 185
Target Start/End: Original strand, 30580136 - 30580189
Alignment:
Q  132 aaataatatttatacaaccattttatgacaattttctctctcatacttatatta 185  Q
    |||| |||||||||||||||||||||||||| ||| ||| ||||||| ||||||    
T  30580136 aaatgatatttatacaaccattttatgacaactttatctttcatactcatatta 30580189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 53066578 - 53066631
Alignment:
Q  19 aagtcaataatgtatattgtcaaatagatcatccattgagggacgaagggagta 72  Q
    ||||||||||| ||||||||||| ||||||||| ||| ||||||| ||||||||    
T  53066578 aagtcaataatatatattgtcaactagatcatctattaagggacggagggagta 53066631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 21 - 73
Target Start/End: Original strand, 10435329 - 10435381
Alignment:
Q  21 gtcaataatgtatattgtcaaatagatcatccattgagggacgaagggagtat 73  Q
    ||||||||||||||||||||| ||| ||||  ||||||||||| |||||||||    
T  10435329 gtcaataatgtatattgtcaactaggtcatttattgagggacggagggagtat 10435381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 15503226 - 15503270
Alignment:
Q  14 atattaagtcaataatgtatattgtcaaatagatcatccattgag 58  Q
    ||||||||||||||||||||||| |||| ||||||||| ||||||    
T  15503226 atattaagtcaataatgtatattatcaactagatcatctattgag 15503270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 132 - 176
Target Start/End: Complemental strand, 52431257 - 52431213
Alignment:
Q  132 aaataatatttatacaaccattttatgacaattttctctctcata 176  Q
    ||||||||||||||||| |||||||||| || |||||||||||||    
T  52431257 aaataatatttatacaatcattttatgataactttctctctcata 52431213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 132 - 176
Target Start/End: Complemental strand, 53871089 - 53871045
Alignment:
Q  132 aaataatatttatacaaccattttatgacaattttctctctcata 176  Q
    |||| ||||||  ||||||||||||||||||||||||||||||||    
T  53871089 aaatgatatttgaacaaccattttatgacaattttctctctcata 53871045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 73
Target Start/End: Complemental strand, 4238552 - 4238493
Alignment:
Q  14 atattaagtcaataatgtatattgtcaaatagatcatccattgagggacgaagggagtat 73  Q
    ||||||||| |||||||||||||||||| ||  ||||  ||||||||||| |||||||||    
T  4238552 atattaagttaataatgtatattgtcaactaagtcatttattgagggacggagggagtat 4238493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 68
Target Start/End: Complemental strand, 35717910 - 35717859
Alignment:
Q  17 ttaagtcaataatgtatattgtcaaatagatcatccattgagggacgaaggg 68  Q
    ||||||||||||||||||||||||||||  ||||| ||||| ||||| ||||    
T  35717910 ttaagtcaataatgtatattgtcaaatacgtcatctattgaaggacggaggg 35717859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 132 - 178
Target Start/End: Complemental strand, 23869035 - 23868989
Alignment:
Q  132 aaataatatttatacaaccattttatgacaattttctctctcatact 178  Q
    |||| |||||| |||||||||||||| |||||||||||| |||||||    
T  23869035 aaatgatatttgtacaaccattttataacaattttctctttcatact 23868989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 132 - 178
Target Start/End: Original strand, 28884494 - 28884540
Alignment:
Q  132 aaataatatttatacaaccattttatgacaattttctctctcatact 178  Q
    ||||||||||| |||||||||| | |||||| |||||||||||||||    
T  28884494 aaataatatttgtacaaccattatgtgacaactttctctctcatact 28884540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 45167507 - 45167561
Alignment:
Q  19 aagtcaataatgtatattgtcaaatagatcatccattgagggacgaagggagtat 73  Q
    ||||||||||||||||||||||| | ||||||  ||| ||||||| |||||||||    
T  45167507 aagtcaataatgtatattgtcaactggatcatatattaagggacggagggagtat 45167561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 72
Target Start/End: Original strand, 46483759 - 46483809
Alignment:
Q  22 tcaataatgtatattgtcaaatagatcatccattgagggacgaagggagta 72  Q
    |||||||||||||||||||| ||||||||| ||| ||||||  ||||||||    
T  46483759 tcaataatgtatattgtcaactagatcatctattaagggacagagggagta 46483809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 132 - 178
Target Start/End: Original strand, 47683804 - 47683850
Alignment:
Q  132 aaataatatttatacaaccattttatgacaattttctctctcatact 178  Q
    |||| |||||| |||||||||||| |||||| |||||||||||||||    
T  47683804 aaatgatatttgtacaaccattttgtgacaactttctctctcatact 47683850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 185
Target Start/End: Original strand, 45205291 - 45205344
Alignment:
Q  132 aaataatatttatacaaccattttatgacaattttctctctcatacttatatta 185  Q
    |||| |||||| |||||| ||||| |||||||||| ||||||||||||| ||||    
T  45205291 aaatgatatttgtacaactattttgtgacaattttttctctcatacttaaatta 45205344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 75
Target Start/End: Original strand, 47638266 - 47638319
Alignment:
Q  22 tcaataatgtatattgtcaaatagatcatccattgagggacgaagggagtatta 75  Q
    |||||||||||||||||||| ||| ||||| ||| ||||||| ||||| |||||    
T  47638266 tcaataatgtatattgtcaattaggtcatctattaagggacggagggaatatta 47638319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 63
Target Start/End: Original strand, 48143966 - 48144015
Alignment:
Q  14 atattaagtcaataatgtatattgtcaaatagatcatccattgagggacg 63  Q
    |||||| ||||||||| ||||||||||||||| ||||  |||||||||||    
T  48143966 atattatgtcaataatatatattgtcaaataggtcatttattgagggacg 48144015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 49058064 - 49058117
Alignment:
Q  19 aagtcaataatgtatattgtcaaatagatcatccattgagggacgaagggagta 72  Q
    ||||||||||| |||||||||||| || ||||| ||| ||||||| ||||||||    
T  49058064 aagtcaataatatatattgtcaaagaggtcatctatttagggacggagggagta 49058117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 75
Target Start/End: Original strand, 54673989 - 54674042
Alignment:
Q  22 tcaataatgtatattgtcaaatagatcatccattgagggacgaagggagtatta 75  Q
    |||||||| |||||||||||| |||||||  ||| ||||||| |||||||||||    
T  54673989 tcaataatatatattgtcaaacagatcatttatttagggacggagggagtatta 54674042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 38833871 - 38833927
Alignment:
Q  19 aagtcaataatgtatattgtcaaatagatcatccattgagggacgaagggagtatta 75  Q
    ||||||||||||||||||||||| | | ||||  ||| ||||||| |||||||||||    
T  38833871 aagtcaataatgtatattgtcaactgggtcatttattaagggacggagggagtatta 38833927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 132 - 180
Target Start/End: Original strand, 50146491 - 50146539
Alignment:
Q  132 aaataatatttatacaaccattttatgacaattttctctctcatactta 180  Q
    |||| |||||| || || |||||| ||||||||||||||||||||||||    
T  50146491 aaatgatatttgtataatcattttgtgacaattttctctctcatactta 50146539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 7e-16; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 10 - 73
Target Start/End: Complemental strand, 13399167 - 13399104
Alignment:
Q  10 aagaatattaagtcaataatgtatattgtcaaatagatcatccattgagggacgaagggagtat 73  Q
    |||||| ||||||||||||||||||||||||| ||||||||| |||||||||||  ||||||||    
T  13399167 aagaatgttaagtcaataatgtatattgtcaactagatcatctattgagggacggggggagtat 13399104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 137 - 178
Target Start/End: Complemental strand, 6842609 - 6842568
Alignment:
Q  137 atatttatacaaccattttatgacaattttctctctcatact 178  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  6842609 atatttatacaaccattttataacaattttctctctcatact 6842568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 17 - 74
Target Start/End: Complemental strand, 43925129 - 43925072
Alignment:
Q  17 ttaagtcaataatgtatattgtcaaatagatcatccattgagggacgaagggagtatt 74  Q
    |||||||||||||||||||| |||||||| || || ||||||||||| ||||||||||    
T  43925129 ttaagtcaataatgtatattatcaaataggtcgtctattgagggacggagggagtatt 43925072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 7442944 - 7442888
Alignment:
Q  19 aagtcaataatgtatattgtcaaatagatcatccattgagggacgaagggagtatta 75  Q
    ||||||||||||||||||||||| ||||||||  ||| ||||||| |||||||||||    
T  7442944 aagtcaataatgtatattgtcaactagatcatttattaagggacggagggagtatta 7442888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 72
Target Start/End: Complemental strand, 42020258 - 42020203
Alignment:
Q  17 ttaagtcaataatgtatattgtcaaatagatcatccattgagggacgaagggagta 72  Q
    |||| |||||||||||||||||||||||| | ||| ||||||||||| ||||||||    
T  42020258 ttaaatcaataatgtatattgtcaaataggttatctattgagggacggagggagta 42020203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 9877136 - 9877082
Alignment:
Q  19 aagtcaataatgtatattgtcaaatagatcatccattgagggacgaagggagtat 73  Q
    ||||||||||||||||||||||| ||| ||||| ||| ||||||| |||||||||    
T  9877136 aagtcaataatgtatattgtcaattaggtcatctattaagggacggagggagtat 9877082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 17 - 74
Target Start/End: Original strand, 332480 - 332537
Alignment:
Q  17 ttaagtcaataatgtatattgtcaaatagatcatccattgagggacgaagggagtatt 74  Q
    ||||||||||||||||||||||||||||||| ||| ||| |||| |  ||||||||||    
T  332480 ttaagtcaataatgtatattgtcaaatagattatctattaaggggcagagggagtatt 332537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 132 - 185
Target Start/End: Complemental strand, 1095893 - 1095840
Alignment:
Q  132 aaataatatttatacaaccattttatgacaattttctctctcatacttatatta 185  Q
    |||| |||||| |||| |||||||||||||||||||||||||||| | ||||||    
T  1095893 aaatgatatttgtacatccattttatgacaattttctctctcatattcatatta 1095840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 132 - 185
Target Start/End: Complemental strand, 9834138 - 9834085
Alignment:
Q  132 aaataatatttatacaaccattttatgacaattttctctctcatacttatatta 185  Q
    |||| |||||||||||||||||||||||||| | ||||| ||||||| ||||||    
T  9834138 aaatgatatttatacaaccattttatgacaactatctctttcatactcatatta 9834085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 132 - 185
Target Start/End: Complemental strand, 17264132 - 17264079
Alignment:
Q  132 aaataatatttatacaaccattttatgacaattttctctctcatacttatatta 185  Q
    |||| ||||||||| |||||||||||||||| ||||| ||||||||| ||||||    
T  17264132 aaatgatatttatataaccattttatgacaactttctttctcatactcatatta 17264079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 32775956 - 32775903
Alignment:
Q  19 aagtcaataatgtatattgtcaaatagatcatccattgagggacgaagggagta 72  Q
    ||||||||||||||||||||||| | | ||||| ||||||||||| ||||||||    
T  32775956 aagtcaataatgtatattgtcaactgggtcatctattgagggacggagggagta 32775903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 132 - 181
Target Start/End: Complemental strand, 44105159 - 44105110
Alignment:
Q  132 aaataatatttatacaaccattttatgacaattttctctctcatacttat 181  Q
    |||| |||||||||||| |||||| |||||||||||||||||||| ||||    
T  44105159 aaattatatttatacaatcattttgtgacaattttctctctcatatttat 44105110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 4083415 - 4083447
Alignment:
Q  19 aagtcaataatgtatattgtcaaatagatcatc 51  Q
    |||||||||||||||||||||||||||||||||    
T  4083415 aagtcaataatgtatattgtcaaatagatcatc 4083447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 38963727 - 38963783
Alignment:
Q  19 aagtcaataatgtatattgtcaaatagatcatccattgagggacgaagggagtatta 75  Q
    ||||||||||| |||||||||||  |||||||| ||| ||||||| |||||||||||    
T  38963727 aagtcaataatatatattgtcaagcagatcatctatttagggacggagggagtatta 38963783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 39418073 - 39418017
Alignment:
Q  19 aagtcaataatgtatattgtcaaatagatcatccattgagggacgaagggagtatta 75  Q
    ||||||||||||||||||||||| ||  ||||||||| || |||| |||||||||||    
T  39418073 aagtcaataatgtatattgtcaactaagtcatccattaagagacggagggagtatta 39418017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 132 - 174
Target Start/End: Original strand, 694283 - 694325
Alignment:
Q  132 aaataatatttatacaaccattttatgacaattttctctctca 174  Q
    |||| |||||| |||||||||||| ||||||||||||||||||    
T  694283 aaatgatatttgtacaaccattttttgacaattttctctctca 694325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 132 - 178
Target Start/End: Complemental strand, 13538307 - 13538261
Alignment:
Q  132 aaataatatttatacaaccattttatgacaattttctctctcatact 178  Q
    |||||||||||||| ||||||| |||||||| ||||||| |||||||    
T  13538307 aaataatatttatataaccattatatgacaactttctctatcatact 13538261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 72
Target Start/End: Complemental strand, 24283010 - 24282960
Alignment:
Q  22 tcaataatgtatattgtcaaatagatcatccattgagggacgaagggagta 72  Q
    |||||||| ||||||||||| ||||||||| ||||||||||| | ||||||    
T  24283010 tcaataatatatattgtcaactagatcatctattgagggacggaaggagta 24282960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 183
Target Start/End: Original strand, 1298227 - 1298259
Alignment:
Q  151 attttatgacaattttctctctcatacttatat 183  Q
    ||||| |||||||||||||||||||||||||||    
T  1298227 attttttgacaattttctctctcatacttatat 1298259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 132 - 176
Target Start/End: Complemental strand, 8482289 - 8482245
Alignment:
Q  132 aaataatatttatacaaccattttatgacaattttctctctcata 176  Q
    |||| |||||| |||||||| |||||||||| |||||||||||||    
T  8482289 aaatgatatttgtacaaccactttatgacaactttctctctcata 8482245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 74
Target Start/End: Original strand, 14372280 - 14372340
Alignment:
Q  14 atattaagtcaataatgtatattgtcaaatagatcatccattgagggacgaagggagtatt 74  Q
    |||| |||||||||||| |||||||||| ||| ||||  ||| ||||||| ||||||||||    
T  14372280 atatcaagtcaataatgcatattgtcaattaggtcatttattaagggacggagggagtatt 14372340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 10658183 - 10658239
Alignment:
Q  17 ttaagtcaataatgtatattgtcaaatagatcatccattgagggacgaagggagtat 73  Q
    ||||||||||||||||||||||||||||||||||| ||||| ||||| |||| ||||    
T  10658183 ttaagtcaataatgtatattgtcaaatagatcatctattgaaggacggagggtgtat 10658239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 14 - 73
Target Start/End: Original strand, 18809479 - 18809538
Alignment:
Q  14 atattaagtcaataatgtatattgtcaaatagatcatccattgagggacgaagggagtat 73  Q
    |||||||||||||||||||||||||||| ||| ||||  ||||||||||| |||||||||    
T  18809479 atattaagtcaataatgtatattgtcaactaggtcatttattgagggacggagggagtat 18809538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 14 - 73
Target Start/End: Complemental strand, 31127863 - 31127804
Alignment:
Q  14 atattaagtcaataatgtatattgtcaaatagatcatccattgagggacgaagggagtat 73  Q
    |||||||||||||||| ||||||||||| ||| ||||  ||||||||||| |||||||||    
T  31127863 atattaagtcaataatatatattgtcaactaggtcatttattgagggacggagggagtat 31127804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 14 - 72
Target Start/End: Original strand, 3383611 - 3383669
Alignment:
Q  14 atattaagtcaataatgtatattgtcaaatagatcatccattgagggacgaagggagta 72  Q
    |||||||||||||||| |||||||||||||| |||||| ||| ||||||| | ||||||    
T  3383611 atattaagtcaataatatatattgtcaaatatatcatctattaagggacggaaggagta 3383669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 14 - 72
Target Start/End: Original strand, 14522582 - 14522640
Alignment:
Q  14 atattaagtcaataatgtatattgtcaaatagatcatccattgagggacgaagggagta 72  Q
    |||| ||||||||||||||||||||||| ||| ||||| ||| ||||||| ||||||||    
T  14522582 atatcaagtcaataatgtatattgtcaactaggtcatctattaagggacggagggagta 14522640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 59
Target Start/End: Complemental strand, 20167632 - 20167590
Alignment:
Q  17 ttaagtcaataatgtatattgtcaaatagatcatccattgagg 59  Q
    ||||||||||| ||||||||||||||||||||||| |||||||    
T  20167632 ttaagtcaatagtgtatattgtcaaatagatcatctattgagg 20167590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 132 - 185
Target Start/End: Original strand, 40517272 - 40517325
Alignment:
Q  132 aaataatatttatacaaccattttatgacaattttctctctcatacttatatta 185  Q
    |||| |||||| |||||||||||||||| |||||||| ||||||||| ||||||    
T  40517272 aaattatatttgtacaaccattttatgataattttctttctcatactcatatta 40517325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 138 - 179
Target Start/End: Original strand, 41935001 - 41935042
Alignment:
Q  138 tatttatacaaccattttatgacaattttctctctcatactt 179  Q
    ||||| |||||||||||| |||||||||||||||||||||||    
T  41935001 tatttgtacaaccattttgtgacaattttctctctcatactt 41935042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 72
Target Start/End: Original strand, 12893734 - 12893789
Alignment:
Q  17 ttaagtcaataatgtatattgtcaaatagatcatccattgagggacgaagggagta 72  Q
    |||||||||||||| |||||||||||||| ||||  | ||||||||| ||||||||    
T  12893734 ttaagtcaataatgcatattgtcaaataggtcatttactgagggacggagggagta 12893789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 132 - 178
Target Start/End: Original strand, 7010688 - 7010734
Alignment:
Q  132 aaataatatttatacaaccattttatgacaattttctctctcatact 178  Q
    |||| |||||| ||||| |||||| ||||||||||||||||||||||    
T  7010688 aaatgatatttgtacaatcattttttgacaattttctctctcatact 7010734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 132 - 178
Target Start/End: Original strand, 26000552 - 26000598
Alignment:
Q  132 aaataatatttatacaaccattttatgacaattttctctctcatact 178  Q
    |||| |||||| ||||||||||||||||||| ||| |||||||||||    
T  26000552 aaatgatatttttacaaccattttatgacaactttatctctcatact 26000598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 132 - 178
Target Start/End: Complemental strand, 37392185 - 37392139
Alignment:
Q  132 aaataatatttatacaaccattttatgacaattttctctctcatact 178  Q
    |||| |||||| |||||||||||| |||||| |||||||||||||||    
T  37392185 aaatgatatttgtacaaccattttttgacaactttctctctcatact 37392139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 132 - 166
Target Start/End: Complemental strand, 43420960 - 43420926
Alignment:
Q  132 aaataatatttatacaaccattttatgacaatttt 166  Q
    ||||||||||| |||||||||||||||||||||||    
T  43420960 aaataatatttgtacaaccattttatgacaatttt 43420926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 132 - 178
Target Start/End: Original strand, 44103779 - 44103825
Alignment:
Q  132 aaataatatttatacaaccattttatgacaattttctctctcatact 178  Q
    |||| |||||| |||||||| |||||||||| |||||||||||||||    
T  44103779 aaattatatttgtacaaccactttatgacaactttctctctcatact 44103825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 63
Target Start/End: Original strand, 44123876 - 44123922
Alignment:
Q  17 ttaagtcaataatgtatattgtcaaatagatcatccattgagggacg 63  Q
    ||||||||| ||||||||||||||||||| ||||| ||||| |||||    
T  44123876 ttaagtcaacaatgtatattgtcaaataggtcatctattgaaggacg 44123922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 185
Target Start/End: Original strand, 157070 - 157123
Alignment:
Q  132 aaataatatttatacaaccattttatgacaattttctctctcatacttatatta 185  Q
    |||| |||||| ||||||||||||  ||||| ||||||||||||||||| ||||    
T  157070 aaatgatatttgtacaaccattttgcgacaactttctctctcatacttacatta 157123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 6471053 - 6471106
Alignment:
Q  19 aagtcaataatgtatattgtcaaatagatcatccattgagggacgaagggagta 72  Q
    ||||||||||||||||||||||| ||| ||||| ||| ||||||  ||||||||    
T  6471053 aagtcaataatgtatattgtcaactaggtcatctattaagggacagagggagta 6471106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 30380738 - 30380791
Alignment:
Q  19 aagtcaataatgtatattgtcaaatagatcatccattgagggacgaagggagta 72  Q
    ||||||||||||||||||||||| | ||||||  ||| ||||||| ||||||||    
T  30380738 aagtcaataatgtatattgtcaactggatcatttattaagggacggagggagta 30380791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 173
Target Start/End: Original strand, 42689844 - 42689885
Alignment:
Q  132 aaataatatttatacaaccattttatgacaattttctctctc 173  Q
    |||| |||||| ||||||||||||||||| ||||||||||||    
T  42689844 aaatgatatttgtacaaccattttatgacgattttctctctc 42689885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 8350933 - 8350877
Alignment:
Q  19 aagtcaataatgtatattgtcaaatagatcatccattgagggacgaagggagtatta 75  Q
    ||||||||||||||||||||||| ||| ||||  ||| ||||| | |||||||||||    
T  8350933 aagtcaataatgtatattgtcaactaggtcatttattaagggatggagggagtatta 8350877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 132 - 176
Target Start/End: Complemental strand, 16011974 - 16011930
Alignment:
Q  132 aaataatatttatacaaccattttatgacaattttctctctcata 176  Q
    ||||||||||| |||||||| ||| |||||| |||||||||||||    
T  16011974 aaataatatttgtacaaccactttgtgacaaatttctctctcata 16011930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 74
Target Start/End: Original strand, 29791145 - 29791205
Alignment:
Q  14 atattaagtcaataatgtatattgtcaaatagatcatccattgagggacgaagggagtatt 74  Q
    |||| |||||||||||| |||||||||| ||| ||||  ||| ||||||| ||||||||||    
T  29791145 atatcaagtcaataatgcatattgtcaactaggtcatttattaagggacgtagggagtatt 29791205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 74
Target Start/End: Original strand, 43066329 - 43066389
Alignment:
Q  14 atattaagtcaataatgtatattgtcaaatagatcatccattgagggacgaagggagtatt 74  Q
    |||| ||||||||||||||||||||| | ||| ||||  ||| ||||||| ||||||||||    
T  43066329 atatcaagtcaataatgtatattgtcgactaggtcatttattaagggacggagggagtatt 43066389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 51737012 - 51736968
Alignment:
Q  14 atattaagtcaataatgtatattgtcaaatagatcatccattgag 58  Q
    |||||||||||||||||||||||||||||||||||||| ||||||    
T  51737012 atattaagtcaataatgtatattgtcaaatagatcatctattgag 51736968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 18360026 - 18359971
Alignment:
Q  19 aagtcaataatgtatattgtcaaatagatcatccattgagggacgaagggagtatt 74  Q
    ||||||||||||||||||||||| ||| ||||| ||| ||||||| ||||||||||    
T  18360026 aagtcaataatgtatattgtcaactaggtcatctattaagggacggagggagtatt 18359971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 14 - 73
Target Start/End: Original strand, 25644562 - 25644621
Alignment:
Q  14 atattaagtcaataatgtatattgtcaaatagatcatccattgagggacgaagggagtat 73  Q
    |||||||||||||||||||||||||||| ||| ||||  ||||| ||||| |||||||||    
T  25644562 atattaagtcaataatgtatattgtcaactaggtcatttattgaaggacggagggagtat 25644621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 36602902 - 36602957
Alignment:
Q  19 aagtcaataatgtatattgtcaaatagatcatccattgagggacgaagggagtatt 74  Q
    ||||||||||||||||||||||| ||| ||||| ||| ||||||| ||||||||||    
T  36602902 aagtcaataatgtatattgtcaactaggtcatctattaagggacggagggagtatt 36602957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 14 - 73
Target Start/End: Complemental strand, 45198398 - 45198339
Alignment:
Q  14 atattaagtcaataatgtatattgtcaaatagatcatccattgagggacgaagggagtat 73  Q
    |||||||||||||||||||||||||||| ||| ||||  ||| ||||||| |||||||||    
T  45198398 atattaagtcaataatgtatattgtcaactaggtcatttattaagggacggagggagtat 45198339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 132 - 178
Target Start/End: Complemental strand, 36413383 - 36413337
Alignment:
Q  132 aaataatatttatacaaccattttatgacaattttctctctcatact 178  Q
    |||| ||||||||||||||| ||||||| ||||||||||||||||||    
T  36413383 aaatgatatttatacaaccactttatgataattttctctctcatact 36413337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 19652309 - 19652256
Alignment:
Q  19 aagtcaataatgtatattgtcaaatagatcatccattgagggacgaagggagta 72  Q
    ||||||||||||||||||||||| ||||||||| ||| ||||||| ||| ||||    
T  19652309 aagtcaataatgtatattgtcaactagatcatctattaagggacggaggaagta 19652256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 23603700 - 23603647
Alignment:
Q  19 aagtcaataatgtatattgtcaaatagatcatccattgagggacgaagggagta 72  Q
    ||||||||||||||||||||||| ||| ||||| ||||||| ||| ||||||||    
T  23603700 aagtcaataatgtatattgtcaactaggtcatctattgaggaacggagggagta 23603647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 132 - 185
Target Start/End: Complemental strand, 28480595 - 28480542
Alignment:
Q  132 aaataatatttatacaaccattttatgacaattttctctctcatacttatatta 185  Q
    |||| ||||||||||||||| |||||||||| ||||||| ||||||| ||||||    
T  28480595 aaatgatatttatacaaccactttatgacaactttctctgtcatactcatatta 28480542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 132 - 185
Target Start/End: Complemental strand, 28481469 - 28481416
Alignment:
Q  132 aaataatatttatacaaccattttatgacaattttctctctcatacttatatta 185  Q
    |||| ||||||||||||||| |||||||||| ||||||| ||||||| ||||||    
T  28481469 aaatgatatttatacaaccactttatgacaactttctctgtcatactcatatta 28481416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 132 - 185
Target Start/End: Complemental strand, 28482344 - 28482291
Alignment:
Q  132 aaataatatttatacaaccattttatgacaattttctctctcatacttatatta 185  Q
    |||| ||||||||||||||| |||||||||| ||||||| ||||||| ||||||    
T  28482344 aaatgatatttatacaaccactttatgacaactttctctgtcatactcatatta 28482291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 73
Target Start/End: Original strand, 4209570 - 4209621
Alignment:
Q  22 tcaataatgtatattgtcaaatagatcatccattgagggacgaagggagtat 73  Q
    |||||||||||||||||||| ||| ||||| ||| ||||||| |||||||||    
T  4209570 tcaataatgtatattgtcaactaggtcatctattaagggacggagggagtat 4209621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 73
Target Start/End: Complemental strand, 6922998 - 6922939
Alignment:
Q  14 atattaagtcaataatgtatattgtcaaatagatcatccattgagggacgaagggagtat 73  Q
    ||||||||||||||||||||||| |||| ||| ||||  ||||||| ||| |||||||||    
T  6922998 atattaagtcaataatgtatattatcaactaggtcatttattgaggaacggagggagtat 6922939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 39260185 - 39260130
Alignment:
Q  19 aagtcaataatgtatattgtcaaatagatcatccattgagggacgaagggagtatt 74  Q
    ||||||||||||||||||||||| ||| ||||| ||| ||||||| ||| ||||||    
T  39260185 aagtcaataatgtatattgtcaactaggtcatctattaagggacggaggaagtatt 39260130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 132 - 178
Target Start/End: Original strand, 4511828 - 4511874
Alignment:
Q  132 aaataatatttatacaaccattttatgacaattttctctctcatact 178  Q
    |||| |||||| || |||||||||||||||| |||||||||||||||    
T  4511828 aaatgatatttgtataaccattttatgacaactttctctctcatact 4511874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 132 - 178
Target Start/End: Original strand, 26718383 - 26718429
Alignment:
Q  132 aaataatatttatacaaccattttatgacaattttctctctcatact 178  Q
    |||| ||||||  ||| ||||||||||||||||||||||||||||||    
T  26718383 aaatgatatttgaacatccattttatgacaattttctctctcatact 26718429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 132 - 178
Target Start/End: Original strand, 26731011 - 26731057
Alignment:
Q  132 aaataatatttatacaaccattttatgacaattttctctctcatact 178  Q
    |||| ||||||  ||| ||||||||||||||||||||||||||||||    
T  26731011 aaatgatatttgaacatccattttatgacaattttctctctcatact 26731057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 63
Target Start/End: Original strand, 50035742 - 50035788
Alignment:
Q  17 ttaagtcaataatgtatattgtcaaatagatcatccattgagggacg 63  Q
    ||||||||| ||||||||||||||||||| ||||| ||||| |||||    
T  50035742 ttaagtcaacaatgtatattgtcaaataggtcatctattgaaggacg 50035788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 55190619 - 55190565
Alignment:
Q  19 aagtcaataatgtatattgtcaaatagatcatccattgagggacgaagggagtat 73  Q
    ||||||||||||||||||||||| ||| | ||| ||| ||||||| |||||||||    
T  55190619 aagtcaataatgtatattgtcaactaggttatctattaagggacggagggagtat 55190565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 63
Target Start/End: Original strand, 55997313 - 55997363
Alignment:
Q  13 aatattaagtcaataatgtatattgtcaaatagatcatccattgagggacg 63  Q
    ||||||||||||||||| |||||| |||||||| ||||| ||||| |||||    
T  55997313 aatattaagtcaataatatatattatcaaataggtcatctattgaaggacg 55997363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 75
Target Start/End: Complemental strand, 3442402 - 3442341
Alignment:
Q  14 atattaagtcaataatgtatattgtcaaatagatcatccattgagggacgaagggagtatta 75  Q
    |||| |||||||||||| |||||||||| ||| ||||  ||| ||||||| |||||||||||    
T  3442402 atatcaagtcaataatgcatattgtcaactaggtcatttattaagggacggagggagtatta 3442341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 7738872 - 7738819
Alignment:
Q  19 aagtcaataatgtatattgtcaaatagatcatccattgagggacgaagggagta 72  Q
    ||||||||||||||||||||||| ||| ||||  ||| ||||||| ||||||||    
T  7738872 aagtcaataatgtatattgtcaactaggtcatttattaagggacggagggagta 7738819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 185
Target Start/End: Original strand, 14443233 - 14443266
Alignment:
Q  152 ttttatgacaattttctctctcatacttatatta 185  Q
    |||| |||||||||||||||||||||||||||||    
T  14443233 ttttgtgacaattttctctctcatacttatatta 14443266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 185
Target Start/End: Original strand, 27384190 - 27384243
Alignment:
Q  132 aaataatatttatacaaccattttatgacaattttctctctcatacttatatta 185  Q
    |||| |||||| |||||||||||||| |||| ||||||||||||| | ||||||    
T  27384190 aaatgatatttgtacaaccattttattacaactttctctctcatattcatatta 27384243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 5123210 - 5123166
Alignment:
Q  19 aagtcaataatgtatattgtcaaatagatcatccattgagggacg 63  Q
    ||||||||||||||||||||||| ||| ||||| ||| |||||||    
T  5123210 aagtcaataatgtatattgtcaactaggtcatctattaagggacg 5123166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 19525769 - 19525717
Alignment:
Q  17 ttaagtcaataatgtatattgtcaaatagatcatccattgagggacgaaggga 69  Q
    |||||||||| |||||||||||||| ||| ||||  ||||||||||| |||||    
T  19525769 ttaagtcaatgatgtatattgtcaactaggtcatttattgagggacggaggga 19525717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 19633902 - 19633858
Alignment:
Q  19 aagtcaataatgtatattgtcaaatagatcatccattgagggacg 63  Q
    ||||||||||| ||||||||||| ||| ||||| |||||||||||    
T  19633902 aagtcaataatatatattgtcaactaggtcatctattgagggacg 19633858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 74
Target Start/End: Original strand, 28166477 - 28166537
Alignment:
Q  14 atattaagtcaataatgtatattgtcaaatagatcatccattgagggacgaagggagtatt 74  Q
    |||| |||||||||||| |||||||||| ||| ||||  ||| ||||||||||| ||||||    
T  28166477 atatcaagtcaataatgcatattgtcaactaggtcatttattaagggacgaaggaagtatt 28166537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 132 - 176
Target Start/End: Complemental strand, 32365724 - 32365680
Alignment:
Q  132 aaataatatttatacaaccattttatgacaattttctctctcata 176  Q
    |||| |||||| |||||||||||| |||||| |||||||||||||    
T  32365724 aaatgatatttgtacaaccattttgtgacaactttctctctcata 32365680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 50033226 - 50033266
Alignment:
Q  17 ttaagtcaataatgtatattgtcaaatagatcatccattga 57  Q
    ||||||||||||||||||| ||||||||| ||||| |||||    
T  50033226 ttaagtcaataatgtatatcgtcaaataggtcatctattga 50033266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 10 - 73
Target Start/End: Complemental strand, 13207015 - 13206952
Alignment:
Q  10 aagaatattaagtcaataatgtatattgtcaaatagatcatccattgagggacgaagggagtat 73  Q
    |||||| |||||||||||| |||||||||||||||| ||||| |||||| |||| |||||||||    
T  13207015 aagaatgttaagtcaataaagtatattgtcaaataggtcatctattgagtgacggagggagtat 13206952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 132 - 176
Target Start/End: Complemental strand, 16352217 - 16352173
Alignment:
Q  132 aaataatatttatacaaccattttatgacaattttctctctcata 176  Q
    |||| ||||||||||||||||||||| ||||||||||||||||||    
T  16352217 aaatgatatttatacaaccattttataacaattttctctctcata 16352173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 14 - 73
Target Start/End: Original strand, 25163367 - 25163426
Alignment:
Q  14 atattaagtcaataatgtatattgtcaaatagatcatccattgagggacgaagggagtat 73  Q
    |||||||||||||||||||||||||||| ||  ||||  ||||||||||| |||||||||    
T  25163367 atattaagtcaataatgtatattgtcaactatgtcatttattgagggacggagggagtat 25163426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 16696069 - 16696015
Alignment:
Q  19 aagtcaataatgtatattgtcaaatagatcatccattgagggacgaagggagtat 73  Q
    |||||||| |||||||||||||| ||| ||||| ||||||||||| |||||||||    
T  16696069 aagtcaatgatgtatattgtcaactaggtcatctattgagggacggagggagtat 16696015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 132 - 176
Target Start/End: Original strand, 29467368 - 29467412
Alignment:
Q  132 aaataatatttatacaaccattttatgacaattttctctctcata 176  Q
    ||||||||||| |||||| |||||||||||| |||||||||||||    
T  29467368 aaataatatttgtacaactattttatgacaactttctctctcata 29467412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 132 - 179
Target Start/End: Original strand, 32149503 - 32149550
Alignment:
Q  132 aaataatatttatacaaccattttatgacaattttctctctcatactt 179  Q
    ||||||||||| |||||||| ||| |||||| ||||||||||||||||    
T  32149503 aaataatatttgtacaaccactttgtgacaactttctctctcatactt 32149550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 8796255 - 8796313
Alignment:
Q  17 ttaagtcaataatgtatattgtcaaatagatcatccattgagggacgaagggagtatta 75  Q
    ||||||||||||||||||||||||| | | ||||  ||| ||||||| |||||||||||    
T  8796255 ttaagtcaataatgtatattgtcaactgggtcatttattaagggacggagggagtatta 8796313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 185
Target Start/End: Original strand, 2163705 - 2163758
Alignment:
Q  132 aaataatatttatacaaccattttatgacaattttctctctcatacttatatta 185  Q
    |||| |||||| ||||| || ||| |||||||||||||||||||||||| ||||    
T  2163705 aaatgatatttgtacaatcaatttgtgacaattttctctctcatacttacatta 2163758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 185
Target Start/End: Original strand, 2175338 - 2175391
Alignment:
Q  132 aaataatatttatacaaccattttatgacaattttctctctcatacttatatta 185  Q
    |||| |||||| ||||| || ||| |||||||||||||||||||||||| ||||    
T  2175338 aaatgatatttgtacaatcaatttgtgacaattttctctctcatacttacatta 2175391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 74
Target Start/End: Complemental strand, 19068826 - 19068769
Alignment:
Q  17 ttaagtcaataatgtatattgtcaaatagatcatccattgagggacgaagggagtatt 74  Q
    |||| ||||||||| || ||||||||||||||||| ||||||||| | || |||||||    
T  19068826 ttaaatcaataatgcattttgtcaaatagatcatctattgagggatggagagagtatt 19068769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 30237375 - 30237428
Alignment:
Q  19 aagtcaataatgtatattgtcaaatagatcatccattgagggacgaagggagta 72  Q
    ||||||||||||||||||||||| ||  ||||  ||| ||||||||||||||||    
T  30237375 aagtcaataatgtatattgtcaactatgtcatttattaagggacgaagggagta 30237428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 132 - 184
Target Start/End: Original strand, 31413539 - 31413591
Alignment:
Q  132 aaataatatttatacaaccattttatgacaattttctctctcatacttatatt 184  Q
    |||| |||||| |||||  ||||| |||||||||||||||| |||||||||||    
T  31413539 aaatgatatttgtacaattattttgtgacaattttctctctaatacttatatt 31413591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 132 - 184
Target Start/End: Complemental strand, 31417364 - 31417312
Alignment:
Q  132 aaataatatttatacaaccattttatgacaattttctctctcatacttatatt 184  Q
    |||| |||||||||||| ||||||||||||| ||| ||| ||||||| |||||    
T  31417364 aaatgatatttatacaatcattttatgacaactttatctgtcatactcatatt 31417312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 14 - 73
Target Start/End: Complemental strand, 4299891 - 4299832
Alignment:
Q  14 atattaagtcaataatgtatattgtcaaatagatcatccattgagggacgaagggagtat 73  Q
    |||||||||||||||||||||||||||| ||| ||||  ||||||||||| |||||||||    
T  4299891 atattaagtcaataatgtatattgtcaactaggtcatttattgagggacggagggagtat 4299832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 14 - 73
Target Start/End: Complemental strand, 22613767 - 22613708
Alignment:
Q  14 atattaagtcaataatgtatattgtcaaatagatcatccattgagggacgaagggagtat 73  Q
    |||||||||||||||||||||||||||| ||| ||||  ||||||||||| |||||||||    
T  22613767 atattaagtcaataatgtatattgtcaactaggtcatttattgagggacggagggagtat 22613708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 132 - 185
Target Start/End: Complemental strand, 34080358 - 34080305
Alignment:
Q  132 aaataatatttatacaaccattttatgacaattttctctctcatacttatatta 185  Q
    |||| |||||||||||| ||||||||||||||||| ||||||||| ||||||||    
T  34080358 aaatgatatttatacaatcattttatgacaattttgtctctcatatttatatta 34080305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 37843628 - 37843575
Alignment:
Q  19 aagtcaataatgtatattgtcaaatagatcatccattgagggacgaagggagta 72  Q
    ||||||||||||||||||||||| ||| ||||| ||||||||||| ||||||||    
T  37843628 aagtcaataatgtatattgtcaagtaggtcatctattgagggacggagggagta 37843575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 14 - 73
Target Start/End: Original strand, 970341 - 970400
Alignment:
Q  14 atattaagtcaataatgtatattgtcaaatagatcatccattgagggacgaagggagtat 73  Q
    ||||||||| |||||||||||||||||| ||| ||||  ||||||||||| |||||||||    
T  970341 atattaagttaataatgtatattgtcaactaggtcatttattgagggacggagggagtat 970400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 14 - 73
Target Start/End: Original strand, 16048288 - 16048347
Alignment:
Q  14 atattaagtcaataatgtatattgtcaaatagatcatccattgagggacgaagggagtat 73  Q
    |||||||||||||||||||||||||||| ||| ||||  ||||||||||| | |||||||    
T  16048288 atattaagtcaataatgtatattgtcaactaggtcatttattgagggacggacggagtat 16048347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 14475283 - 14475230
Alignment:
Q  19 aagtcaataatgtatattgtcaaatagatcatccattgagggacgaagggagta 72  Q
    ||||||||||||||||||||||| ||| ||||| ||||| ||||| ||||||||    
T  14475283 aagtcaataatgtatattgtcaactaggtcatctattgaaggacggagggagta 14475230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 61
Target Start/End: Original strand, 39405967 - 39406014
Alignment:
Q  14 atattaagtcaataatgtatattgtcaaatagatcatccattgaggga 61  Q
    |||||||||||||||||||||||||||| ||| ||||  |||||||||    
T  39405967 atattaagtcaataatgtatattgtcaactaggtcatttattgaggga 39406014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 73
Target Start/End: Original strand, 43067424 - 43067483
Alignment:
Q  14 atattaagtcaataatgtatattgtcaaatagatcatccattgagggacgaagggagtat 73  Q
    ||||||| |||||||||||||||||||| ||| ||||  ||||||||||| | |||||||    
T  43067424 atattaaatcaataatgtatattgtcaactaggtcatttattgagggacggatggagtat 43067483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 132 - 178
Target Start/End: Original strand, 4434485 - 4434531
Alignment:
Q  132 aaataatatttatacaaccattttatgacaattttctctctcatact 178  Q
    |||| |||||| |||||||||||| |||||||||| |||||||||||    
T  4434485 aaatgatatttgtacaaccattttttgacaattttttctctcatact 4434531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 132 - 178
Target Start/End: Complemental strand, 13734417 - 13734371
Alignment:
Q  132 aaataatatttatacaaccattttatgacaattttctctctcatact 178  Q
    |||| |||||| |||||||| |||||||||| |||||||||||||||    
T  13734417 aaatgatatttgtacaaccactttatgacaactttctctctcatact 13734371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 132 - 178
Target Start/End: Original strand, 14206403 - 14206449
Alignment:
Q  132 aaataatatttatacaaccattttatgacaattttctctctcatact 178  Q
    |||| |||||| |||||||||||| |||||| |||||||||||||||    
T  14206403 aaatgatatttgtacaaccattttttgacaactttctctctcatact 14206449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 132 - 178
Target Start/End: Complemental strand, 30334823 - 30334777
Alignment:
Q  132 aaataatatttatacaaccattttatgacaattttctctctcatact 178  Q
    |||| |||||| |||||||| |||||||||||||||||| |||||||    
T  30334823 aaatgatatttgtacaaccactttatgacaattttctctttcatact 30334777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 39036618 - 39036668
Alignment:
Q  19 aagtcaataatgtatattgtcaaatagatcatccattgagggacgaaggga 69  Q
    ||||||||||||||||||||||| ||| ||||| ||| ||||||| |||||    
T  39036618 aagtcaataatgtatattgtcaactaggtcatctattaagggacggaggga 39036668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 2864160 - 2864205
Alignment:
Q  17 ttaagtcaataatgtatattgtcaaatagatcatccattgagggac 62  Q
    |||||||||||||||||||| |||||||  ||||| ||||||||||    
T  2864160 ttaagtcaataatgtatattatcaaatatgtcatctattgagggac 2864205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 5212975 - 5212918
Alignment:
Q  19 aagtcaataatgtatattgtcaaatagatcatccattgagggacgaagggagtattac 76  Q
    ||||||||||||||||||||||| ||| ||||  ||| || |||| ||||||||||||    
T  5212975 aagtcaataatgtatattgtcaactaggtcatttattaagagacggagggagtattac 5212918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 185
Target Start/End: Original strand, 15479503 - 15479536
Alignment:
Q  152 ttttatgacaattttctctctcatacttatatta 185  Q
    ||||||||||| ||||||||||||||||||||||    
T  15479503 ttttatgacaactttctctctcatacttatatta 15479536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 133 - 166
Target Start/End: Original strand, 19428434 - 19428467
Alignment:
Q  133 aataatatttatacaaccattttatgacaatttt 166  Q
    |||||||||||||||| |||||||||||||||||    
T  19428434 aataatatttatacaatcattttatgacaatttt 19428467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 35290494 - 35290547
Alignment:
Q  19 aagtcaataatgtatattgtcaaatagatcatccattgagggacgaagggagta 72  Q
    ||||||||||||||||||||||| ||| ||||| ||| ||||||| ||| ||||    
T  35290494 aagtcaataatgtatattgtcaactaggtcatctattaagggacggaggaagta 35290547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 185
Target Start/End: Original strand, 42509620 - 42509673
Alignment:
Q  132 aaataatatttatacaaccattttatgacaattttctctctcatacttatatta 185  Q
    |||| ||||||  |||| ||||||||||||| ||| ||||||||||||||||||    
T  42509620 aaatgatattttaacaatcattttatgacaaatttttctctcatacttatatta 42509673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 185
Target Start/End: Complemental strand, 28597235 - 28597187
Alignment:
Q  137 atatttatacaaccattttatgacaattttctctctcatacttatatta 185  Q
    |||||||||||| || ||||| |||||||| ||||||||| ||||||||    
T  28597235 atatttatacaatcaatttatcacaattttatctctcatatttatatta 28597187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 185
Target Start/End: Complemental strand, 31284446 - 31284398
Alignment:
Q  137 atatttatacaaccattttatgacaattttctctctcatacttatatta 185  Q
    |||||| |||| ||||||| |||||| ||||||||||||||| ||||||    
T  31284446 atatttgtacatccattttgtgacaactttctctctcatactcatatta 31284398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 74
Target Start/End: Complemental strand, 35448055 - 35447995
Alignment:
Q  14 atattaagtcaataatgtatattgtcaaatagatcatccattgagggacgaagggagtatt 74  Q
    |||| |||||||||||| |||||||||| ||| ||||  ||| ||||||| ||||||||||    
T  35448055 atatcaagtcaataatgcatattgtcaactaggtcatttattaagggacggagggagtatt 35447995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 74
Target Start/End: Original strand, 42148510 - 42148570
Alignment:
Q  14 atattaagtcaataatgtatattgtcaaatagatcatccattgagggacgaagggagtatt 74  Q
    |||| |||||||||||| |||||||||| ||| ||||  ||| ||||||| ||||||||||    
T  42148510 atatcaagtcaataatgcatattgtcaactaggtcatttattaagggacggagggagtatt 42148570  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 14 - 73
Target Start/End: Complemental strand, 3898629 - 3898570
Alignment:
Q  14 atattaagtcaataatgtatattgtcaaatagatcatccattgagggacgaagggagtat 73  Q
    |||||||||||||||||||||||||||| ||| ||||  ||||||||||| |||||||||    
T  3898629 atattaagtcaataatgtatattgtcaactaggtcatttattgagggacggagggagtat 3898570  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 14 - 73
Target Start/End: Original strand, 16265236 - 16265295
Alignment:
Q  14 atattaagtcaataatgtatattgtcaaatagatcatccattgagggacgaagggagtat 73  Q
    |||||||||||||||||||||||||||| ||| ||||  ||||||||||| |||||||||    
T  16265236 atattaagtcaataatgtatattgtcaactaggtcatttattgagggacggagggagtat 16265295  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 14 - 73
Target Start/End: Original strand, 16266365 - 16266424
Alignment:
Q  14 atattaagtcaataatgtatattgtcaaatagatcatccattgagggacgaagggagtat 73  Q
    |||||||||||||||||||||||||||| ||| ||||  ||||||||||| |||||||||    
T  16266365 atattaagtcaataatgtatattgtcaactaggtcatttattgagggacggagggagtat 16266424  T

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Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 14 - 73
Target Start/End: Original strand, 26441837 - 26441896
Alignment:
Q  14 atattaagtcaataatgtatattgtcaaatagatcatccattgagggacgaagggagtat 73  Q
    |||||||||||||||||||||||||||| ||| ||||  ||||||||||| |||||||||    
T  26441837 atattaagtcaataatgtatattgtcaactaggtcatttattgagggacggagggagtat 26441896  T

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Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 14 - 73
Target Start/End: Original strand, 43680273 - 43680332
Alignment:
Q  14 atattaagtcaataatgtatattgtcaaatagatcatccattgagggacgaagggagtat 73  Q
    |||||||||||||||||||||||||||| ||| ||||  ||||||||||| |||||||||    
T  43680273 atattaagtcaataatgtatattgtcaactaggtcatttattgagggacggagggagtat 43680332  T

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Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 4605207 - 4605261
Alignment:
Q  19 aagtcaataatgtatattgtcaaatagatcatccattgagggacgaagggagtat 73  Q
    ||||||||||||||||||||||||||| ||||| ||| ||||||| |||||||||    
T  4605207 aagtcaataatgtatattgtcaaataggtcatctattaagggacggagggagtat 4605261  T

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Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 17 - 71
Target Start/End: Complemental strand, 21034584 - 21034530
Alignment:
Q  17 ttaagtcaataatgtatattgtcaaatagatcatccattgagggacgaagggagt 71  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||  |||||||    
T  21034584 ttaagtcaataatgtatattgtcaaatagattatctattgagggacagagggagt 21034530  T

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Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 37281300 - 37281356
Alignment:
Q  19 aagtcaataatgtatattgtcaaatagatcatccattgagggacgaagggagtatta 75  Q
    ||||||||||| ||||||||||| ||||||||| ||| ||||||| |||||||||||    
T  37281300 aagtcaataatatatattgtcaactagatcatctattaagggacggagggagtatta 37281356  T

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Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 21 - 73
Target Start/End: Original strand, 50481486 - 50481538
Alignment:
Q  21 gtcaataatgtatattgtcaaatagatcatccattgagggacgaagggagtat 73  Q
    |||||||||||||||||||||||||  |||| ||||||||||| |||||||||    
T  50481486 gtcaataatgtatattgtcaaataggccatctattgagggacgtagggagtat 50481538  T

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Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 10 - 72
Target Start/End: Complemental strand, 38737440 - 38737378
Alignment:
Q  10 aagaatattaagtcaataatgtatattgtcaaatagatcatccattgagggacgaagggagta 72  Q
    |||||| ||||||||||| | || |||||||||||||||||| |||| |||||| ||||||||    
T  38737440 aagaatgttaagtcaatattatacattgtcaaatagatcatctattgtgggacggagggagta 38737378  T

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Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 132 - 178
Target Start/End: Original strand, 40139129 - 40139175
Alignment:
Q  132 aaataatatttatacaaccattttatgacaattttctctctcatact 178  Q
    |||| |||||| ||||||||||||||||||| |||||||||||||||    
T  40139129 aaatgatatttgtacaaccattttatgacaactttctctctcatact 40139175  T

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Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 132 - 177
Target Start/End: Complemental strand, 43612137 - 43612092
Alignment:
Q  132 aaataatatttatacaaccattttatgacaattttctctctcatac 177  Q
    |||| |||||| ||||||||||||||||||| ||||||||||||||    
T  43612137 aaatgatatttgtacaaccattttatgacaactttctctctcatac 43612092  T

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Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 73
Target Start/End: Original strand, 24982554 - 24982613
Alignment:
Q  14 atattaagtcaataatgtatattgtcaaatagatcatccattgagggacgaagggagtat 73  Q
    |||||||||||||||| |||||||||||  || ||||  ||||||||||| |||||||||    
T  24982554 atattaagtcaataatatatattgtcaacaaggtcatttattgagggacggagggagtat 24982613  T

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Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 73
Target Start/End: Original strand, 25531981 - 25532040
Alignment:
Q  14 atattaagtcaataatgtatattgtcaaatagatcatccattgagggacgaagggagtat 73  Q
    |||| ||||||||||||||||||||||| ||| ||||  ||| ||||||| |||||||||    
T  25531981 atatcaagtcaataatgtatattgtcaactaggtcatttattaagggacggagggagtat 25532040  T

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Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 132 - 178
Target Start/End: Original strand, 1690449 - 1690495
Alignment:
Q  132 aaataatatttatacaaccattttatgacaattttctctctcatact 178  Q
    ||||||||||| |||||||||||| |||||| ||| |||||||||||    
T  1690449 aaataatatttgtacaaccattttgtgacaactttttctctcatact 1690495  T

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Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 132 - 178
Target Start/End: Original strand, 31433505 - 31433551
Alignment:
Q  132 aaataatatttatacaaccattttatgacaattttctctctcatact 178  Q
    |||| |||||| ||||||||||||| ||||||||| |||||||||||    
T  31433505 aaattatatttgtacaaccattttacgacaattttttctctcatact 31433551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 32988402 - 32988348
Alignment:
Q  19 aagtcaataatgtatattgtcaaatagatcatccattgagggacgaagggagtat 73  Q
    ||||||||||||||||||||||| | ||||||  ||| ||||||| |||||||||    
T  32988402 aagtcaataatgtatattgtcaactggatcatttattaagggacggagggagtat 32988348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 132 - 178
Target Start/End: Original strand, 37690432 - 37690478
Alignment:
Q  132 aaataatatttatacaaccattttatgacaattttctctctcatact 178  Q
    |||| |||||| ||||| || ||||||||||||||||||||||||||    
T  37690432 aaatgatatttgtacaatcactttatgacaattttctctctcatact 37690478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 132 - 178
Target Start/End: Complemental strand, 40596111 - 40596065
Alignment:
Q  132 aaataatatttatacaaccattttatgacaattttctctctcatact 178  Q
    |||| |||||| |||||||||||| |||||| |||||||||||||||    
T  40596111 aaatgatatttgtacaaccattttgtgacaactttctctctcatact 40596065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 132 - 178
Target Start/End: Complemental strand, 41507251 - 41507205
Alignment:
Q  132 aaataatatttatacaaccattttatgacaattttctctctcatact 178  Q
    |||| |||||| |||||||||||| |||||| |||||||||||||||    
T  41507251 aaatgatatttgtacaaccattttgtgacaactttctctctcatact 41507205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 132 - 178
Target Start/End: Complemental strand, 48325835 - 48325789
Alignment:
Q  132 aaataatatttatacaaccattttatgacaattttctctctcatact 178  Q
    |||| |||||| |||||||||||| |||||||||||| |||||||||    
T  48325835 aaatgatatttgtacaaccattttgtgacaattttctatctcatact 48325789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 23569727 - 23569666
Alignment:
Q  19 aagtcaataatgtatattgtcaaatagatcatccattgagggacgaagggagtattacgtaa 80  Q
    ||||||||||| |||||||||||| || ||||  ||| ||||||| ||||||||||| ||||    
T  23569727 aagtcaataatatatattgtcaaacaggtcatttatttagggacggagggagtattaagtaa 23569666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 29162051 - 29162104
Alignment:
Q  19 aagtcaataatgtatattgtcaaatagatcatccattgagggacgaagggagta 72  Q
    ||||||||||||||||||||||| |||||| |  ||| ||||||| ||||||||    
T  29162051 aagtcaataatgtatattgtcaactagatcgtttattaagggacggagggagta 29162104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 185
Target Start/End: Original strand, 29264018 - 29264071
Alignment:
Q  132 aaataatatttatacaaccattttatgacaattttctctctcatacttatatta 185  Q
    |||| |||||| |||||||| |||||||||| ||||| ||||||||||| ||||    
T  29264018 aaatgatatttgtacaaccactttatgacaactttctttctcatacttacatta 29264071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 30529103 - 30529050
Alignment:
Q  19 aagtcaataatgtatattgtcaaatagatcatccattgagggacgaagggagta 72  Q
    ||||||||||||||||||||||| ||| ||||  ||| ||||||| ||||||||    
T  30529103 aagtcaataatgtatattgtcaactaggtcatttattaagggacggagggagta 30529050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 133 - 166
Target Start/End: Original strand, 32882949 - 32882982
Alignment:
Q  133 aataatatttatacaaccattttatgacaatttt 166  Q
    |||||||||| |||||||||||||||||||||||    
T  32882949 aataatatttgtacaaccattttatgacaatttt 32882982  T

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Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 132 - 176
Target Start/End: Complemental strand, 39780219 - 39780175
Alignment:
Q  132 aaataatatttatacaaccattttatgacaattttctctctcata 176  Q
    ||||||||||| ||||||||||||||||||  ||||| |||||||    
T  39780219 aaataatatttgtacaaccattttatgacatctttctatctcata 39780175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0604 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0604
Description:

Target: scaffold0604; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 1317 - 1370
Alignment:
Q  20 agtcaataatgtatattgtcaaatagatcatccattgagggacgaagggagtat 73  Q
    |||||||||||||||||||||| ||| ||||| ||||| ||||| |||||||||    
T  1317 agtcaataatgtatattgtcaactaggtcatctattgacggacggagggagtat 1370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 15269 - 15214
Alignment:
Q  19 aagtcaataatgtatattgtcaaatagatcatccattgagggacgaagggagtatt 74  Q
    ||||||||||||||||||||||| ||| ||||  ||| ||||||| ||||||||||    
T  15269 aagtcaataatgtatattgtcaactaggtcatttattaagggacggagggagtatt 15214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 132 - 178
Target Start/End: Complemental strand, 31657 - 31611
Alignment:
Q  132 aaataatatttatacaaccattttatgacaattttctctctcatact 178  Q
    |||| |||||| |||||||||||| |||||| |||||||||||||||    
T  31657 aaatgatatttgtacaaccattttttgacaactttctctctcatact 31611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 185
Target Start/End: Complemental strand, 18704 - 18651
Alignment:
Q  132 aaataatatttatacaaccattttatgacaattttctctctcatacttatatta 185  Q
    |||| |||||| ||||| || ||| |||||||||||||||||||||||| ||||    
T  18704 aaatgatatttgtacaatcaatttgtgacaattttctctctcatacttacatta 18651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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